Abstract

It was demonstrated that statistical analysis of bacteria colonies Fresnel patterns recorded in the optical system with converging spherical wave illumination is suitable for highly effective bacteria species classification. The proposed method includes Fresnel patterns recording followed by image processing and the statistical analysis based on feature extraction, feature selection, classification and classification performance methods. Examination performed on various bacteria species (Salmonella enteritidis, Staphylococcus aureus, Staphylococcus intermedius, Escherichia coli, Proteus mirabilis, Pseudomonas aeruginosa and Citrobacter freundii) revealed that the proposed method achieved very high accuracy of over 98%.

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  1. S. G. Amyes, “The rise in bacterial resistance,” BMJ 320(7229), 199–200 (2000).
    [CrossRef] [PubMed]
  2. A. S. S. Colsky, R. S. S. Kirsner, and F. A. A. Kerdel, “Analysis of antibiotic susceptibilities of skin wound flora in hospitalized dermatology patients. The crisis of antibiotic resistance has come to the surface,” Arch. Dermatol. 134(8), 1006–1009 (1998).
    [CrossRef] [PubMed]
  3. K. Christen, “Bioterrorism and waterborne pathogens: how big is the threat?” Environ. Sci. Technol. 35(19), 396A–397A (2001).
    [CrossRef] [PubMed]
  4. A. M. Nicol, C. Hurrell, W. McDowall, K. Bartlett, and N. Elmieh, “Communicating the risks of a new, emerging pathogen: the case of Cryptococcus gattii,” Risk Anal. 28(2), 373–386 (2008).
    [CrossRef] [PubMed]
  5. C. Dennis, “The bugs of war,” Nature 411(6835), 232–235 (2001).
    [CrossRef] [PubMed]
  6. S. B. S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12S), S122–S129 (2004).
    [CrossRef] [PubMed]
  7. S. E. Gould, “Underground Network,” Sci. Am. 307(4), 28–28 (2012).
    [CrossRef]
  8. J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
    [CrossRef]
  9. J. C. Auger, K. B. Aptowicz, R. G. Pinnick, Y. L. Pan, and R. K. Chang, “Angularly resolved light scattering from aerosolized spores: observations and calculations,” Opt. Lett. 32(22), 3358–3360 (2007).
    [CrossRef] [PubMed]
  10. G. E. Fernandes, Y. L. Pan, R. K. Chang, K. Aptowicz, and R. G. Pinnick, “Simultaneous forward- and backward-hemisphere elastic-light-scattering patterns of respirable-size aerosols,” Opt. Lett. 31(20), 3034–3036 (2006).
    [CrossRef] [PubMed]
  11. A. C. Samuels, A. P. Snyder, D. K. Emge, D. S. T. Amant, J. Minter, M. Campbell, and A. Tripathi, “Classification of select category A and B bacteria by Fourier transform infrared spectroscopy,” Appl. Spectrosc. 63(1), 14–24 (2009).
    [CrossRef] [PubMed]
  12. S. Morel, N. Leone, P. Adam, and J. Amouroux, “Detection of bacteria by time-resolved laser-induced breakdown spectroscopy,” Appl. Opt. 42(30), 6184–6191 (2003).
    [CrossRef] [PubMed]
  13. A. Manninen, M. Putkiranta, A. Rostedt, J. Saarela, T. Laurila, M. Marjamäki, J. Keskinen, and R. Hernberg, “Instrumentation for measuring fluorescence cross sections from airborne microsized particles,” Appl. Opt. 47(2), 110–115 (2008).
    [CrossRef] [PubMed]
  14. A. Alimova, A. Katz, P. Gottlieb, and R. R. Alfano, “Proteins and dipicolinic acid released during heat shock activation of Bacillus subtilis spores probed by optical spectroscopy,” Appl. Opt. 45(3), 445–450 (2006).
    [CrossRef] [PubMed]
  15. G. W. Faris, R. A. Copeland, K. Mortelmans, and B. V. Bronk, “Spectrally resolved absolute fluorescence cross sections for bacillus spores,” Appl. Opt. 36(4), 958–967 (1997).
    [CrossRef] [PubMed]
  16. R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
    [PubMed]
  17. S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
    [CrossRef] [PubMed]
  18. W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
    [CrossRef] [PubMed]
  19. A. Subramanian, J. Irudayaraj, and T. Ryan, “A mixed self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157: H7,” Biosens. Bioelectron. 21(7), 998–1006 (2006).
    [CrossRef] [PubMed]
  20. J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
    [CrossRef] [PubMed]
  21. E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
    [CrossRef] [PubMed]
  22. P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
    [CrossRef] [PubMed]
  23. M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
    [CrossRef] [PubMed]
  24. E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).
    [CrossRef] [PubMed]
  25. P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
    [CrossRef] [PubMed]
  26. E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
    [CrossRef] [PubMed]
  27. E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophoton. 4(4), 236–243 (2011).
    [CrossRef] [PubMed]
  28. I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Exploiting of optical transforms for bacteria evaluation in vitro,” in SPIE (2009), 7371_1H.
  29. I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Image processing guided analysis for estimation of bacteria colonies number by means of optical transforms,” Opt. Express 18(12), 12992–13005 (2010).
    [CrossRef] [PubMed]
  30. I. Buzalewicz, K. Wysocka-Król, K. Kowal, and H. Podbielska, “Evaluation of antibacterial agents efficiency,” IEEE Trans. Inf. Technol. Biomed. 2, 341–351 (2010).
    [CrossRef]
  31. I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Influence of various growth conditions on Fresnel diffraction patterns of bacteria colonies examined in the optical system with converging spherical wave illumination,” Opt. Express 19(22), 21768–21785 (2011).
    [CrossRef] [PubMed]
  32. E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
    [CrossRef] [PubMed]
  33. A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE 11, 82120R, 82120R-13 (2012).
    [CrossRef]
  34. H. Podbielska, I. Buzalewicz, and A. Suchwalko, “Bacteria Classification by Means of the Statistical Analysis of Fresnel Diffraction Patterns of Bacteria Colonies,” Biomedical Optics (BIOMED) (2012).
  35. M. D. Abràmoff, P. J. Magalhães, and S. J. Ram, “Image processing with ImageJ,” Biophoton. Inter. 11, 36–42 (2004).
  36. R. M. Rangayyan, Biomedical Image Analysis (CRC Press, 2005).
  37. R. C. Gonzalez, R. E. Woods, and B. R. Masters, “Digital Image Processing, Third Edition,” J. Biomed. Opt. 14, 029901 (2009).
  38. R. R Development Core Team, “R: A Language and Environment for Statistical Computing,” R Foundation for Statistical Computing. 1, 409 (2011).
  39. R. A. Johnson and D. W. Wichern, Applied Multivariate Statistical Analysis (Prentice Hall Upper Saddle River, NJ, 2002).
  40. J. F. Hair, W. C. Black, B. J. Babin, and R. E. Anderson, Multivariate Data Analysis (6th Ed.) (Prentice Hall, 2006).
  41. P. Dalgaard, Introductory Statistics with R (Springer, 2008).

2012 (3)

S. E. Gould, “Underground Network,” Sci. Am. 307(4), 28–28 (2012).
[CrossRef]

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE 11, 82120R, 82120R-13 (2012).
[CrossRef]

2011 (3)

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophoton. 4(4), 236–243 (2011).
[CrossRef] [PubMed]

I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Influence of various growth conditions on Fresnel diffraction patterns of bacteria colonies examined in the optical system with converging spherical wave illumination,” Opt. Express 19(22), 21768–21785 (2011).
[CrossRef] [PubMed]

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

2010 (3)

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[CrossRef] [PubMed]

I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Image processing guided analysis for estimation of bacteria colonies number by means of optical transforms,” Opt. Express 18(12), 12992–13005 (2010).
[CrossRef] [PubMed]

I. Buzalewicz, K. Wysocka-Król, K. Kowal, and H. Podbielska, “Evaluation of antibacterial agents efficiency,” IEEE Trans. Inf. Technol. Biomed. 2, 341–351 (2010).
[CrossRef]

2009 (2)

A. C. Samuels, A. P. Snyder, D. K. Emge, D. S. T. Amant, J. Minter, M. Campbell, and A. Tripathi, “Classification of select category A and B bacteria by Fourier transform infrared spectroscopy,” Appl. Spectrosc. 63(1), 14–24 (2009).
[CrossRef] [PubMed]

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

2008 (4)

E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[CrossRef] [PubMed]

A. M. Nicol, C. Hurrell, W. McDowall, K. Bartlett, and N. Elmieh, “Communicating the risks of a new, emerging pathogen: the case of Cryptococcus gattii,” Risk Anal. 28(2), 373–386 (2008).
[CrossRef] [PubMed]

A. Manninen, M. Putkiranta, A. Rostedt, J. Saarela, T. Laurila, M. Marjamäki, J. Keskinen, and R. Hernberg, “Instrumentation for measuring fluorescence cross sections from airborne microsized particles,” Appl. Opt. 47(2), 110–115 (2008).
[CrossRef] [PubMed]

M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
[CrossRef] [PubMed]

2007 (3)

2006 (4)

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[CrossRef] [PubMed]

A. Subramanian, J. Irudayaraj, and T. Ryan, “A mixed self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157: H7,” Biosens. Bioelectron. 21(7), 998–1006 (2006).
[CrossRef] [PubMed]

A. Alimova, A. Katz, P. Gottlieb, and R. R. Alfano, “Proteins and dipicolinic acid released during heat shock activation of Bacillus subtilis spores probed by optical spectroscopy,” Appl. Opt. 45(3), 445–450 (2006).
[CrossRef] [PubMed]

G. E. Fernandes, Y. L. Pan, R. K. Chang, K. Aptowicz, and R. G. Pinnick, “Simultaneous forward- and backward-hemisphere elastic-light-scattering patterns of respirable-size aerosols,” Opt. Lett. 31(20), 3034–3036 (2006).
[CrossRef] [PubMed]

2005 (1)

R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
[PubMed]

2004 (3)

S. B. S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12S), S122–S129 (2004).
[CrossRef] [PubMed]

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

M. D. Abràmoff, P. J. Magalhães, and S. J. Ram, “Image processing with ImageJ,” Biophoton. Inter. 11, 36–42 (2004).

2003 (1)

2002 (1)

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[CrossRef] [PubMed]

2001 (2)

K. Christen, “Bioterrorism and waterborne pathogens: how big is the threat?” Environ. Sci. Technol. 35(19), 396A–397A (2001).
[CrossRef] [PubMed]

C. Dennis, “The bugs of war,” Nature 411(6835), 232–235 (2001).
[CrossRef] [PubMed]

2000 (1)

S. G. Amyes, “The rise in bacterial resistance,” BMJ 320(7229), 199–200 (2000).
[CrossRef] [PubMed]

1998 (1)

A. S. S. Colsky, R. S. S. Kirsner, and F. A. A. Kerdel, “Analysis of antibiotic susceptibilities of skin wound flora in hospitalized dermatology patients. The crisis of antibiotic resistance has come to the surface,” Arch. Dermatol. 134(8), 1006–1009 (1998).
[CrossRef] [PubMed]

1997 (1)

Abràmoff, M. D.

M. D. Abràmoff, P. J. Magalhães, and S. J. Ram, “Image processing with ImageJ,” Biophoton. Inter. 11, 36–42 (2004).

Adam, P.

Adil, A.

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

Alfano, R. R.

Alimova, A.

Amant, D. S. T.

Amouroux, J.

Amyes, S. G.

S. G. Amyes, “The rise in bacterial resistance,” BMJ 320(7229), 199–200 (2000).
[CrossRef] [PubMed]

Aptowicz, K.

Aptowicz, K. B.

Aroonnual, A.

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophoton. 4(4), 236–243 (2011).
[CrossRef] [PubMed]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[CrossRef] [PubMed]

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

Auger, J. C.

Badrane, H.

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Bae, E.

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophoton. 4(4), 236–243 (2011).
[CrossRef] [PubMed]

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[CrossRef] [PubMed]

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[CrossRef] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).
[CrossRef] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[CrossRef] [PubMed]

Bai, N.

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[CrossRef] [PubMed]

Baker, H. V.

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Banada, P. P.

Banada, P. P. P.

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[CrossRef] [PubMed]

Bartlett, K.

A. M. Nicol, C. Hurrell, W. McDowall, K. Bartlett, and N. Elmieh, “Communicating the risks of a new, emerging pathogen: the case of Cryptococcus gattii,” Risk Anal. 28(2), 373–386 (2008).
[CrossRef] [PubMed]

Bayraktar, B.

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[CrossRef] [PubMed]

Bhunia, A.

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Bhunia, A. K.

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophoton. 4(4), 236–243 (2011).
[CrossRef] [PubMed]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[CrossRef] [PubMed]

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[CrossRef] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).
[CrossRef] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[CrossRef] [PubMed]

Bronk, B. V.

Buzalewicz, I.

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE 11, 82120R, 82120R-13 (2012).
[CrossRef]

I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Influence of various growth conditions on Fresnel diffraction patterns of bacteria colonies examined in the optical system with converging spherical wave illumination,” Opt. Express 19(22), 21768–21785 (2011).
[CrossRef] [PubMed]

I. Buzalewicz, K. Wysocka-Król, K. Kowal, and H. Podbielska, “Evaluation of antibacterial agents efficiency,” IEEE Trans. Inf. Technol. Biomed. 2, 341–351 (2010).
[CrossRef]

I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Image processing guided analysis for estimation of bacteria colonies number by means of optical transforms,” Opt. Express 18(12), 12992–13005 (2010).
[CrossRef] [PubMed]

Campbell, M.

Chang, R. K.

Chen, S.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[CrossRef] [PubMed]

Christen, K.

K. Christen, “Bioterrorism and waterborne pathogens: how big is the threat?” Environ. Sci. Technol. 35(19), 396A–397A (2001).
[CrossRef] [PubMed]

Colsky, A. S. S.

A. S. S. Colsky, R. S. S. Kirsner, and F. A. A. Kerdel, “Analysis of antibiotic susceptibilities of skin wound flora in hospitalized dermatology patients. The crisis of antibiotic resistance has come to the surface,” Arch. Dermatol. 134(8), 1006–1009 (1998).
[CrossRef] [PubMed]

Copeland, R. A.

Davisson, V.

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Davisson, V. J.

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

Dennis, C.

C. Dennis, “The bugs of war,” Nature 411(6835), 232–235 (2001).
[CrossRef] [PubMed]

Dietz, J.

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Dostálek, J.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[CrossRef] [PubMed]

Dundar, M. M.

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Elmieh, N.

A. M. Nicol, C. Hurrell, W. McDowall, K. Bartlett, and N. Elmieh, “Communicating the risks of a new, emerging pathogen: the case of Cryptococcus gattii,” Risk Anal. 28(2), 373–386 (2008).
[CrossRef] [PubMed]

Emge, D. K.

Faris, G. W.

Fernandes, G. E.

Gottlieb, P.

Gould, S. E.

S. E. Gould, “Underground Network,” Sci. Am. 307(4), 28–28 (2012).
[CrossRef]

Gulig, P. A.

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Guo, S.

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[CrossRef] [PubMed]

Hernberg, R.

Hilliard, L. R.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[CrossRef] [PubMed]

Hirleman, E. D.

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophoton. 4(4), 236–243 (2011).
[CrossRef] [PubMed]

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[CrossRef] [PubMed]

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
[CrossRef] [PubMed]

E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[CrossRef] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).
[CrossRef] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[CrossRef] [PubMed]

Holdman, C.

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

Homola, J.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[CrossRef] [PubMed]

Huff, K.

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[CrossRef] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).
[CrossRef] [PubMed]

Hurrell, C.

A. M. Nicol, C. Hurrell, W. McDowall, K. Bartlett, and N. Elmieh, “Communicating the risks of a new, emerging pathogen: the case of Cryptococcus gattii,” Risk Anal. 28(2), 373–386 (2008).
[CrossRef] [PubMed]

Irudayaraj, J.

A. Subramanian, J. Irudayaraj, and T. Ryan, “A mixed self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157: H7,” Biosens. Bioelectron. 21(7), 998–1006 (2006).
[CrossRef] [PubMed]

Jiang, S.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[CrossRef] [PubMed]

Jin, S.

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Katz, A.

Kerdel, F. A. A.

A. S. S. Colsky, R. S. S. Kirsner, and F. A. A. Kerdel, “Analysis of antibiotic susceptibilities of skin wound flora in hospitalized dermatology patients. The crisis of antibiotic resistance has come to the surface,” Arch. Dermatol. 134(8), 1006–1009 (1998).
[CrossRef] [PubMed]

Keskinen, J.

Kirsner, R. S. S.

A. S. S. Colsky, R. S. S. Kirsner, and F. A. A. Kerdel, “Analysis of antibiotic susceptibilities of skin wound flora in hospitalized dermatology patients. The crisis of antibiotic resistance has come to the surface,” Arch. Dermatol. 134(8), 1006–1009 (1998).
[CrossRef] [PubMed]

Kowal, K.

I. Buzalewicz, K. Wysocka-Król, K. Kowal, and H. Podbielska, “Evaluation of antibacterial agents efficiency,” IEEE Trans. Inf. Technol. Biomed. 2, 341–351 (2010).
[CrossRef]

Lary, T.

Laurila, T.

Leone, N.

Levy, S. B. S. B.

S. B. S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12S), S122–S129 (2004).
[CrossRef] [PubMed]

Lian, W.

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Lim, D. V.

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Litherland, S. A.

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Magalhães, P. J.

M. D. Abràmoff, P. J. Magalhães, and S. J. Ram, “Image processing with ImageJ,” Biophoton. Inter. 11, 36–42 (2004).

Manninen, A.

Marjamäki, M.

Marshall, B.

S. B. S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12S), S122–S129 (2004).
[CrossRef] [PubMed]

McDowall, W.

A. M. Nicol, C. Hurrell, W. McDowall, K. Bartlett, and N. Elmieh, “Communicating the risks of a new, emerging pathogen: the case of Cryptococcus gattii,” Risk Anal. 28(2), 373–386 (2008).
[CrossRef] [PubMed]

Mechery, S. J.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[CrossRef] [PubMed]

Minter, J.

Morel, S.

Mortelmans, K.

Munteanu, A.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[CrossRef] [PubMed]

Nicol, A. M.

A. M. Nicol, C. Hurrell, W. McDowall, K. Bartlett, and N. Elmieh, “Communicating the risks of a new, emerging pathogen: the case of Cryptococcus gattii,” Risk Anal. 28(2), 373–386 (2008).
[CrossRef] [PubMed]

Noble, R. T.

R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
[PubMed]

Pan, Y. L.

Patsekin, V.

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Pinnick, R. G.

Podbielska, H.

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE 11, 82120R, 82120R-13 (2012).
[CrossRef]

I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Influence of various growth conditions on Fresnel diffraction patterns of bacteria colonies examined in the optical system with converging spherical wave illumination,” Opt. Express 19(22), 21768–21785 (2011).
[CrossRef] [PubMed]

I. Buzalewicz, K. Wysocka-Król, K. Kowal, and H. Podbielska, “Evaluation of antibacterial agents efficiency,” IEEE Trans. Inf. Technol. Biomed. 2, 341–351 (2010).
[CrossRef]

I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Image processing guided analysis for estimation of bacteria colonies number by means of optical transforms,” Opt. Express 18(12), 12992–13005 (2010).
[CrossRef] [PubMed]

Putkiranta, M.

Ragheb, K.

Rajwa, B.

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
[CrossRef] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[CrossRef] [PubMed]

Ram, S. J.

M. D. Abràmoff, P. J. Magalhães, and S. J. Ram, “Image processing with ImageJ,” Biophoton. Inter. 11, 36–42 (2004).

Rasooly, A.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[CrossRef] [PubMed]

Robinson, J.

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Robinson, J. P.

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[CrossRef] [PubMed]

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
[CrossRef] [PubMed]

E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[CrossRef] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).
[CrossRef] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[CrossRef] [PubMed]

Rostedt, A.

Roumani, A.

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Ryan, T.

A. Subramanian, J. Irudayaraj, and T. Ryan, “A mixed self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157: H7,” Biosens. Bioelectron. 21(7), 998–1006 (2006).
[CrossRef] [PubMed]

Saarela, J.

Samuels, A. C.

Snyder, A. P.

Subramanian, A.

A. Subramanian, J. Irudayaraj, and T. Ryan, “A mixed self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157: H7,” Biosens. Bioelectron. 21(7), 998–1006 (2006).
[CrossRef] [PubMed]

Suchwalko, A.

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE 11, 82120R, 82120R-13 (2012).
[CrossRef]

Tan, W.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[CrossRef] [PubMed]

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Thomas, J.

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Tripathi, A.

Venkatapathi, M.

Wang, L.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[CrossRef] [PubMed]

Weisberg, S. B.

R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
[PubMed]

Wieliczko, A.

Wu, D.

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Wysocka-Król, K.

I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Image processing guided analysis for estimation of bacteria colonies number by means of optical transforms,” Opt. Express 18(12), 12992–13005 (2010).
[CrossRef] [PubMed]

I. Buzalewicz, K. Wysocka-Król, K. Kowal, and H. Podbielska, “Evaluation of antibacterial agents efficiency,” IEEE Trans. Inf. Technol. Biomed. 2, 341–351 (2010).
[CrossRef]

Yee, S. S.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[CrossRef] [PubMed]

Zhao, X. J.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[CrossRef] [PubMed]

Anal. Biochem. (1)

W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, and S. Jin, “Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.,” Anal. Biochem. 334(1), 135–144 (2004).
[CrossRef] [PubMed]

Appl. Opt. (6)

Appl. Spectrosc. (1)

Arch. Dermatol. (1)

A. S. S. Colsky, R. S. S. Kirsner, and F. A. A. Kerdel, “Analysis of antibiotic susceptibilities of skin wound flora in hospitalized dermatology patients. The crisis of antibiotic resistance has come to the surface,” Arch. Dermatol. 134(8), 1006–1009 (1998).
[CrossRef] [PubMed]

Biophoton. Inter. (1)

M. D. Abràmoff, P. J. Magalhães, and S. J. Ram, “Image processing with ImageJ,” Biophoton. Inter. 11, 36–42 (2004).

Biosens. Bioelectron. (3)

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[CrossRef] [PubMed]

P. P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[CrossRef] [PubMed]

A. Subramanian, J. Irudayaraj, and T. Ryan, “A mixed self-assembled monolayer-based surface plasmon immunosensor for detection of E. coli O157: H7,” Biosens. Bioelectron. 21(7), 998–1006 (2006).
[CrossRef] [PubMed]

BMJ (1)

S. G. Amyes, “The rise in bacterial resistance,” BMJ 320(7229), 199–200 (2000).
[CrossRef] [PubMed]

Chem. Asian J. (1)

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[CrossRef] [PubMed]

Environ. Sci. Technol. (1)

K. Christen, “Bioterrorism and waterborne pathogens: how big is the threat?” Environ. Sci. Technol. 35(19), 396A–397A (2001).
[CrossRef] [PubMed]

IEEE Trans. Inf. Technol. Biomed. (1)

I. Buzalewicz, K. Wysocka-Król, K. Kowal, and H. Podbielska, “Evaluation of antibacterial agents efficiency,” IEEE Trans. Inf. Technol. Biomed. 2, 341–351 (2010).
[CrossRef]

Int. J. Food Microbiol. (1)

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[CrossRef] [PubMed]

J Biophoton. (1)

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophoton. 4(4), 236–243 (2011).
[CrossRef] [PubMed]

J. Biomed. Opt. (2)

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[CrossRef] [PubMed]

E. Bae, P. P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[CrossRef] [PubMed]

J. Water Health (1)

R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
[PubMed]

Nat. Med. (1)

S. B. S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12S), S122–S129 (2004).
[CrossRef] [PubMed]

Nature (1)

C. Dennis, “The bugs of war,” Nature 411(6835), 232–235 (2001).
[CrossRef] [PubMed]

Opt. Express (2)

Opt. Lett. (2)

Opt. Photon. News (1)

J. Robinson, B. Rajwa, E. Bae, V. Patsekin, A. Roumani, A. Bhunia, J. Dietz, V. Davisson, M. M. Dundar, J. Thomas, and E. D. Hirleman, “Using Scattering to Identify Bacterial Pathogens,” Opt. Photon. News 22(10), 20–27 (2011).
[CrossRef]

Proc. SPIE (1)

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE 11, 82120R, 82120R-13 (2012).
[CrossRef]

Rev. Sci. Instrum. (1)

E. Bae, V. Patsekin, B. Rajwa, A. K. Bhunia, C. Holdman, V. J. Davisson, E. D. Hirleman, and J. P. Robinson, “Development of a microbial high-throughput screening instrument based on elastic light scatter patterns,” Rev. Sci. Instrum. 83(4), 044304 (2012).
[CrossRef] [PubMed]

Risk Anal. (1)

A. M. Nicol, C. Hurrell, W. McDowall, K. Bartlett, and N. Elmieh, “Communicating the risks of a new, emerging pathogen: the case of Cryptococcus gattii,” Risk Anal. 28(2), 373–386 (2008).
[CrossRef] [PubMed]

Sci. Am. (1)

S. E. Gould, “Underground Network,” Sci. Am. 307(4), 28–28 (2012).
[CrossRef]

Other (8)

I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Exploiting of optical transforms for bacteria evaluation in vitro,” in SPIE (2009), 7371_1H.

R. M. Rangayyan, Biomedical Image Analysis (CRC Press, 2005).

R. C. Gonzalez, R. E. Woods, and B. R. Masters, “Digital Image Processing, Third Edition,” J. Biomed. Opt. 14, 029901 (2009).

R. R Development Core Team, “R: A Language and Environment for Statistical Computing,” R Foundation for Statistical Computing. 1, 409 (2011).

R. A. Johnson and D. W. Wichern, Applied Multivariate Statistical Analysis (Prentice Hall Upper Saddle River, NJ, 2002).

J. F. Hair, W. C. Black, B. J. Babin, and R. E. Anderson, Multivariate Data Analysis (6th Ed.) (Prentice Hall, 2006).

P. Dalgaard, Introductory Statistics with R (Springer, 2008).

H. Podbielska, I. Buzalewicz, and A. Suchwalko, “Bacteria Classification by Means of the Statistical Analysis of Fresnel Diffraction Patterns of Bacteria Colonies,” Biomedical Optics (BIOMED) (2012).

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