Abstract

An advanced version of Jones matrix optical coherence tomography (JMT) is demonstrated for Doppler and polarization sensitive imaging of the posterior eye. JMT is capable of providing localized flow tomography by Doppler detection and investigating the birefringence property of tissue through a three-dimensional (3-D) Jones matrix measurement. Owing to an incident polarization multiplexing scheme based on passive optical components, this system is stable, safe in a clinical environment, and cost effective. Since the properties of this version of JMT provide intrinsic compensation for system imperfection, the system is easy to calibrate. Compared with the previous version of JMT, this advanced JMT achieves a sufficiently long depth measurement range for clinical cases of posterior eye disease. Furthermore, a fine spectral shift compensation method based on the cross-correlation of calibration signals was devised for stabilizing the phase of OCT, which enables a high sensitivity Doppler OCT measurement. In addition, a new theory of JMT which integrates the Jones matrix measurement, Doppler measurement, and scattering measurement is presented. This theory enables a sensitivity-enhanced scattering OCT and high-sensitivity Doppler OCT. These new features enable the application of this system to clinical cases. A healthy subject and a geographic atrophy patient were measured in vivo, and simultaneous imaging of choroidal vasculature and birefringence structures are demonstrated.

© 2013 OSA

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2012

2011

2010

V. J. Srinivasan, S. Sakadžić, I. Gorczynska, S. Ruvinskaya, W. Wu, J. G. Fujimoto, and D. A. Boas, “Quantitative cerebral blood flow with optical coherence tomography,” Opt. Express18, 2477 (2010).
[CrossRef] [PubMed]

F. Prati, E. Regar, G. S. Mintz, E. Arbustini, C. D. Mario, I.-K. Jang, T. Akasaka, M. Costa, G. Guagliumi, E. Grube, Y. Ozaki, F. Pinto, and P. W. J. Serruys, “Expert review document on methodology, terminology, and clinical applications of optical coherence tomography: physical principles, methodology of image acquisition, and clinical application for assessment of coronary arteries and atherosclerosis,” Eur. Heart J.31, 401–415 (2010).
[CrossRef]

T. Yonetsu, T. Kakuta, T. Lee, K. Takayama, K. Kakita, T. Iwamoto, N. Kawaguchi, K. Takahashi, G. Yamamoto, Y. Iesaka, H. Fujiwara, and M. Isobe, “Assessment of acute injuries and chronic intimal thickening of the radial artery after transradial coronary intervention by optical coherence tomography,” Eur. Heart J.31, 1608–1615 (2010).
[CrossRef] [PubMed]

S. Makita, M. Yamanari, and Y. Yasuno, “Generalized jones matrix optical coherence tomography: performance and local birefringence imaging,” Opt. Express18, 854–876 (2010).
[CrossRef] [PubMed]

M. Yamanari, S. Makita, Y. Lim, and Y. Yasuno, “Full-range polarization-sensitive swept-source optical coherence tomography by simultaneous transversal and spectral modulation,” Opt. Express18, 13964–13980 (2010).
[CrossRef] [PubMed]

S. Moon, S.-W. Lee, and Z. Chen, “Reference spectrum extraction and fixed-pattern noise removal in optical coherence tomography,” Opt. Express18, 24395–24404 (2010).
[CrossRef] [PubMed]

2009

B. J. Vakoc, R. M. Lanning, J. A. Tyrrell, T. P. Padera, L. A. Bartlett, T. Stylianopoulos, L. L. Munn, G. J. Tearney, D. Fukumura, R. K. Jain, and B. E. Bouma, “Three-dimensional microscopy of the tumor microenvironment in vivo using optical frequency domain imaging,” Nat. Med15, 1219–1223 (2009).
[CrossRef] [PubMed]

Y. Yasuno, M. Yamanari, K. Kawana, T. Oshika, and M. Miura, “Investigation of post-glaucoma-surgery structures by three-dimensional and polarization sensitive anterior eye segment optical coherence tomography,” Opt. Express17, 3980–3996 (2009).
[CrossRef] [PubMed]

E. Götzinger, M. Pircher, B. Baumann, C. Ahlers, W. Geitzenauer, U. Schmidt-Erfurth, and C. K. Hitzenberger, “Three-dimensional polarization sensitive OCT imaging and interactive display of the human retina,” Opt. Express17, 4151–4165 (2009).
[CrossRef] [PubMed]

N. Gonzalo, P. W. Serruys, T. Okamura, Z. J. Shen, Y. Onuma, H. M. Garcia-Garcia, G. Sarno, C. Schultz, R. J. v. Geuns, J. Ligthart, and E. Regar, “Optical coherence tomography assessment of the acute effects of stent implantation on the vessel wall: a systematic quantitative approach,” Heart95, 1913–1919 (2009).
[CrossRef] [PubMed]

T. C. Chen, “Spectral domain optical coherence tomography in glaucoma: Qualitative and quantitative analysis of the optic nerve head and retinal nerve fiber layer (An AOS thesis),” Trans. Am. Ophthalmo. Soc.107, 254–281 (2009). PMID: PMCID: PMC2814580.
[PubMed]

2008

M. Miura, M. Yamanari, T. Iwasaki, A. E. Elsner, S. Makita, T. Yatagai, and Y. Yasuno, “Imaging polarimetry in age-related macular degeneration,” Invest. Ophthalmol. Vis. Sci.49, 2661–2667 (2008). PMID: .
[CrossRef] [PubMed]

E. Götzinger, M. Pircher, W. Geitzenauer, C. Ahlers, B. Baumann, S. Michels, U. Schmidt-Erfurth, and C. K. Hitzenberger, “Retinal pigment epithelium segmentation by polarization sensitive optical coherencetomography,” Opt. Express16, 16410–16422 (2008).
[CrossRef]

M. Yamanari, S. Makita, and Y. Yasuno, “Polarization-sensitive swept-source optical coherence tomography with continuous source polarization modulation,” Opt. Express16, 5892–5906 (2008).
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2007

Y. Yasuno, Y. Hong, S. Makita, M. Yamanari, M. Akiba, M. Miura, and T. Yatagai, “In vivo high-contrast imaging of deep posterior eye by 1-μ m swept source optical coherence tomography and scattering optical coherence angiography,” Opt. Express15, 6121–6139 (2007).
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M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, “Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination,” J. Biomed. Opt.12, 041205 (2007). PMID: .
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M. Hangai, Y. Ojima, N. Gotoh, R. Inoue, Y. Yasuno, S. Makita, M. Yamanari, T. Yatagai, M. Kita, and N. Yoshimura, “Three-dimensional imaging of macular holes with high-speed optical coherence tomography,” Ophthalmology114, 763–773 (2007). PMID: .
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J. Lademann, N. Otberg, H. Richter, L. Meyer, H. Audring, A. Teichmann, S. Thomas, A. Knüttel, and W. Sterry, “Application of optical non-invasive methods in skin physiology: a comparison of laser scanning microscopy and optical coherent tomography with histological analysis,” Skin Res. Technol.13, 119–132 (2007).
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2006

T. Gambichler, R. Matip, G. Moussa, P. Altmeyer, and K. Hoffmann, “In vivo data of epidermal thickness evaluated by optical coherence tomography: Effects of age, gender, skin type, and anatomic site,” J. Dermatol. Sci.44, 145–152 (2006).
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S. Alam, R. J. Zawadzki, S. Choi, C. Gerth, S. S. Park, L. Morse, and J. S. Werner, “Clinical application of rapid serial fourier-domain optical coherence tomography for macular imaging,” Ophthalmology113, 1425–1431 (2006).
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V. J. Srinivasan, M. Wojtkowski, A. J. Witkin, J. S. Duker, T. H. Ko, M. Carvalho, J. S. Schuman, A. Kowalczyk, and J. G. Fujimoto, “High-definition and 3-dimensional imaging of macular pathologies with high-speed ultrahigh-resolution optical coherence tomography,” Ophthalmology113, 2054.e1–2054.14 (2006). PMID: PMCID: PMC1939823.
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M. Pircher, E. Götzinger, O. Findl, S. Michels, W. Geitzenauer, C. Leydolt, U. Schmidt-Erfurth, and C. K. Hitzenberger, “Human macula investigated in vivo with polarization-sensitive optical coherence tomography,” Invest. Ophthalmol. Vis. Sci.47, 5487–5494 (2006). PMID: .
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M. Yamanari, S. Makita, V. D. Madjarova, T. Yatagai, and Y. Yasuno, “Fiber-based polarization-sensitive fourier domain optical coherence tomography using b-scan-oriented polarization modulation method,” Opt. Express14, 6502–6515 (2006).
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S. Makita, Y. Hong, M. Yamanari, T. Yatagai, and Y. Yasuno, “Optical coherence angiography,” Opt. Express14, 7821–7840 (2006).
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2005

2004

B. Shen, G. Zuccaro, T. L. Gramlich, N. Gladkova, P. Trolli, M. Kareta, C. P. Delaney, J. T. Connor, B. A. Lashner, C. L. Bevins, F. Feldchtein, F. H. Remzi, M. L. Bambrick, and V. W. Fazio, “In vivo colonoscopic optical coherence tomography for transmural inflammation in inflammatory bowel disease,” Clin. Gastroenterol. Hepatol.2, 1080–1087 (2004).
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R. A. Leitgeb, L. Schmetterer, C. K. Hitzenberger, A. F. Fercher, F. Berisha, M. Wojtkowski, and T. Bajraszewski, “Real-time measurement of in vitro flow by fourier-domain color doppler optical coherence tomography.” Opt. Lett.29, 171–173 (2004).
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B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Thickness and birefringence of healthy retinal nerve fiber layer tissue measured with polarization-sensitive optical coherence tomography,” Invest. Ophthalmol. Vis. Sci.45, 2606–2612 (2004). PMID: .
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B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Jones matrix analysis for a polarization-sensitive optical coherence tomography system using fiber-optic components,” Opt. Lett.29, 2512–2514 (2004).
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M. Pircher, E. Götzinger, R. Leitgeb, H. Sattmann, O. Findl, and C. Hitzenberger, “Imaging of polarization properties of human retina in vivo with phase resolved transversal PS-OCT,” Opt. Express12, 5940–5951 (2004).
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2003

2002

2001

B. T. Amaechi, S. M. Higham, A. G. Podoleanu, J. A. Rogers, and D. A. Jackson, “Use of optical coherence tomography for assessment of dental caries: quantitative procedure,” J. Oral. Rehabil.28, 1092–1093 (2001).
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2000

P. J. Tadrous, “Methods for imaging the structure and function of living tissues and cells: 1. optical coherence tomography,” J. Pathol.191, 115–119 (2000).
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1999

1998

1997

1996

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1992

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1988

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V. R. Korde, G. T. Bonnema, W. Xu, C. Krishnamurthy, J. Ranger-Moore, K. Saboda, L. D. Slayton, S. J. Salasche, J. A. Warneke, D. S. Alberts, and J. K. Barton, “Using optical coherence tomography to evaluate skin sun damage and precancer,” Lasers Surg. Med.39, 687–695 (2007).
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Altmeyer, P.

T. Gambichler, R. Matip, G. Moussa, P. Altmeyer, and K. Hoffmann, “In vivo data of epidermal thickness evaluated by optical coherence tomography: Effects of age, gender, skin type, and anatomic site,” J. Dermatol. Sci.44, 145–152 (2006).
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T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40, 85–94 (2005).
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B. T. Amaechi, S. M. Higham, A. G. Podoleanu, J. A. Rogers, and D. A. Jackson, “Use of optical coherence tomography for assessment of dental caries: quantitative procedure,” J. Oral. Rehabil.28, 1092–1093 (2001).
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Bambrick, M. L.

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B. Shen, G. Zuccaro, T. L. Gramlich, N. Gladkova, P. Trolli, M. Kareta, C. P. Delaney, J. T. Connor, B. A. Lashner, C. L. Bevins, F. Feldchtein, F. H. Remzi, M. L. Bambrick, and V. W. Fazio, “In vivo colonoscopic optical coherence tomography for transmural inflammation in inflammatory bowel disease,” Clin. Gastroenterol. Hepatol.2, 1080–1087 (2004).
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Bouma, B. E.

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B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11, 3490–3497 (2003).
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S. Brand, J. M. Poneros, B. E. Bouma, G. J. Tearney, C. C. Compton, and N. S. Nishioka, “Optical coherence tomography in the gastrointestinal tract,” Endoscopy32, 796–803 (2000).
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Brand, S.

S. Brand, J. M. Poneros, B. E. Bouma, G. J. Tearney, C. C. Compton, and N. S. Nishioka, “Optical coherence tomography in the gastrointestinal tract,” Endoscopy32, 796–803 (2000).
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B. Cense, M. Mujat, T. C. Chen, B. H. Park, and J. F. de Boer, “Polarization-sensitive spectral-domain optical coherence tomography using a single line scan camera,” Opt. Express15, 2421–2431 (2007).
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B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Thickness and birefringence of healthy retinal nerve fiber layer tissue measured with polarization-sensitive optical coherence tomography,” Invest. Ophthalmol. Vis. Sci.45, 2606–2612 (2004). PMID: .
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B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Invivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography,” Opt. Lett.27, 1610–1612 (2002).
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M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, “Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination,” J. Biomed. Opt.12, 041205 (2007). PMID: .
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T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40, 85–94 (2005).
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B. T. Amaechi, S. M. Higham, A. G. Podoleanu, J. A. Rogers, and D. A. Jackson, “Use of optical coherence tomography for assessment of dental caries: quantitative procedure,” J. Oral. Rehabil.28, 1092–1093 (2001).
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B. J. Vakoc, R. M. Lanning, J. A. Tyrrell, T. P. Padera, L. A. Bartlett, T. Stylianopoulos, L. L. Munn, G. J. Tearney, D. Fukumura, R. K. Jain, and B. E. Bouma, “Three-dimensional microscopy of the tumor microenvironment in vivo using optical frequency domain imaging,” Nat. Med15, 1219–1223 (2009).
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Figures (10)

Fig. 1
Fig. 1

Schematic diagram of MC-JMT system. LP: linear polarizer, PC: polarization controller, FC: fiber collimator, M: mirror, PBS: polarizing beam splitter, BS: beam splitter, H- and V-BPD: balanced photo-detector for horizontally and vertically polarized signals, respectively.

Fig. 2
Fig. 2

Diagram of the Fourier transformed interference signals from horizontal (H) and vertical (V) detection channels.

Fig. 3
Fig. 3

MC-JMT cross-sectional images of a normal macular. (a) Raw OCT intensity images detected by detection channels of A (horizontal polarization) and B (vertical polarization) of the PD detection unit. The lower and upper images correspond to the first and second polarization state, respectively. (b) Global-phase-corrected sensitivity-enhanced scattering OCT obtained by coherent composition. (c) A phase retardation image, (d) A DOPU image, (e) power-of-Doppler-phase-shift image (e). The scale bar represents 500 μm × 500 μm.

Fig. 4
Fig. 4

MC-JMT cross-sections of a normal ONH. (a) a global-phase-corrected sensitivity-enhanced scattering OCT, (b) phase retardation, (c) DOPU, and (d) power of Doppler phase shift. The scale bar represents 500 μm × 500 μm.

Fig. 5
Fig. 5

En face projection images of (a) global-phase-corrected sensitivity-enhanced scattering OCT, (b) power of Doppler shift and (c) ICGA of an ONH. The scale bar represents 1 mm × 1 mm.

Fig. 6
Fig. 6

In vivo measurement images of a GA patient; (a) fundus photograph, (b) fundus auto-fluorescence image, en face projection images of (c) global-phase-corrected sensitivity-enhanced scattering intensity, and (d) Doppler shift power. The scale bar indicates 1 mm × 1 mm.

Fig. 7
Fig. 7

Multi-contrast cross-section images of geographic atrophy. The first to the fourth rows correspond to coherent composite scattering images, phase retardation images, DOPU images, and power-of-Doppler-shift images, respectively. Columns (1)–(3) were obtained at the location indicated in Fig. 6(a). Arrows indicate the atrophic region. The scale bar indicates 500 μm × 500 μm.

Fig. 8
Fig. 8

Measured phase noise with (○) and without (□) the spectral shift correction. The green line indicates the theoretical prediction.

Fig. 9
Fig. 9

OCT images of the macular of a healthy volunteer. (a) A raw image without FPN removal, (b) FPN removal without spectral shift cancellation, (c) with spectral shift cancellation and FPN removal, but no zero-padding applied. (d) FPN removal was performed after spectral shift cancellation with 1/16 pixel resolution.

Fig. 10
Fig. 10

The comparison between global- and bulk- phase-corrected sensitivity-enhanced scattering OCTs. (a) and (c) are a B-scan and en face projection of sensitivity-enhanced OCTs with global-phase correction, and (b) and (d) are those with bulk-phase correction.

Equations (35)

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I r ( j ) = | E r ( j ) + E t ( j ) | 2
I c ( j ) = | E r ( j β j ) + E t ( j β j ) | 2 + I r ( j ) * δ ( j β j )
[ I r ( j ) ] [ I c ( j ) ] * = [ I r ( j ) ] [ I r * ( j ) ] [ δ ( j β j ) ]
1 [ [ I r ( j ) ] [ I c ( j ) ] * ] = I r ( j ) * I r * ( j ) * δ ( j β j ) = { I r ( j ) I r ( j ) } * δ ( j β j )
E out ( 1 ) ( z ) = χ J all ( z ) E in ( 1 )
E out ( 2 ) ( z ) = χ J all ( z ) E in ( 2 ) .
E out ( z ) = χ J all ( z ) E in
E out ( z ) = [ E out A ( 1 ) ( z ) E out A ( 2 ) ( z ) E out B ( 1 ) ( z ) E out B ( 2 ) ( z ) ] .
J all ( z ) = J out J s ( z ) J in
E out ( z ) E out ( z 0 ) 1 = χ J out J s ( z ) J in E in E in 1 J in 1 J out 1 χ 1 = χ J out J s ( z ) J out 1 χ 1
λ 1 , 2 = T / 2 ± T 2 / 4 D
δ ( z ) = { Arg [ λ 1 λ 2 * ] : 0 Arg [ λ 1 λ 2 * ] π Arg [ λ 1 * λ 2 ] : otherwise .
ε ( z ) = | ln | λ 1 | | λ 2 | |
Δ φ ( 0 , j ) Arg [ l = 1 4 exp i ( Arg [ M l ( j ) / M l ( 0 ) ] ) | M l ( 0 ) | 1 + | M l ( j ) | 1 ] ,
M ¯ j exp ( i Δ φ ( 0 , j ) ) M ( j ) .
S = [ I Q U V ] = [ | E out A ( 1 ) ( z ) | 2 + | E out B ( 1 ) ( z ) | 2 | E out A ( 1 ) ( z ) | 2 | E out B ( 1 ) ( z ) | 2 E out A ( 1 ) ( z ) E out B ( 1 ) ( z ) * + E out A ( 1 ) ( z ) * E out B ( 1 ) ( z ) i ( E out A ( 1 ) ( z ) E out B ( 1 ) ( z ) * E out A ( 1 ) ( z ) * E out B ( 1 ) ( z ) ) . ]
DOPU = Q ¯ 2 + U ¯ 2 + V ¯ 2
( Q ¯ , U ¯ , V ¯ ) = ( i Q i I i , i U i I i , i V i I i )
E out ( z ) = [ E out A ( 1 ) ( z ) E out A ( 2 ) ( z ) E out B ( 1 ) ( z ) E out B ( 2 ) ( z ) ] [ E out A ( 1 ) ( z ) e i θ 1 E out A ( 1 ) ( z ) e i θ 2 E out A ( 1 ) ( z ) e i θ 3 E out A ( 1 ) ( z ) ]
θ 1 Arg [ z E out A ( 2 ) ( z ) E out A ( 1 ) ( z ) * ]
θ 2 Arg [ z E out B ( 1 ) ( z ) E out A ( 1 ) ( z ) * ]
θ 3 Arg [ z E out B ( 2 ) ( z ) E out A ( 1 ) ( z ) * ]
E out ¯ ( z ) = 1 4 [ E out A ( 1 ) ( z ) + e i θ 1 E out A ( 2 ) ( z ) + e i θ 2 E out B ( 1 ) ( z ) + e i θ 3 E out B ( 2 ) ( z ) ] .
Δ ϕ ( z ) = 4 π τ λ c n ν z ( z ) + ϕ b
Δ ϕ ( z , j ) = Arg [ E out ¯ ( z , j + 1 ) E out ¯ ( z , j ) * ]
ϕ b ( j ) = Arg [ z E out ¯ ( z , j + 1 ) E out ¯ ( z , j ) * ]
Δ ϕ ¯ ( z , j ) = Arg [ j = m 0 m 0 + m 2 E out ¯ ( z , j + 1 ) E out ¯ ( z , j ) * exp ( i ϕ b ( j ) ) W ( z , j ) ]
W ( z , j ) = { 1 : E out ¯ ( z , j + 1 ) E out ¯ ( z , j ) * > ε 2 0 : otherwise
Δ ϕ ¯ ( z , j ) = Arg [ E out ¯ ( z , j + 1 ) E out ¯ ( z , j ) * exp ( i ϕ b ( j ) ) W ( z , j ) ] .
I ¯ ( z , j ) = | j = m 0 m 0 + m 1 E out ¯ ( z , j ) exp ( i Δ φ ( z ) ( m 0 , j ) ) | 2
I ¯ ( z , j ) = | j = m 0 m 0 + m 1 E out ¯ ( z , j ) exp ( i ϕ b ( m 0 , j ) ) | 2
ϕ b ( m 0 , j ) = Arg [ z E out ¯ ( z , j ) E out ¯ ( z , m 0 ) * ] .
σ Δ ϕ = ( 1 SNR s ) + ( z s z c ) 2 ( 1 SNR c )
E out ( z ) = η X R ρ J out J s ( z ) J in X f ( X E in )
E out ( z ) E out ( z 0 ) 1 = η X R ρ J out J z ( z ) J out 1 ρ 1 R 1 X 1 η 1 .

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