Abstract

We present a GPU accelerated multi-functional spectral domain optical coherence tomography system at 1300nm. The system is capable of real-time processing and display of every intensity image, comprised of 512 pixels by 2048 A-lines acquired at 20 frames per second. The update rate for all four images with size of 512 pixels by 2048 A-lines simultaneously (intensity, phase retardation, flow and en face view) is approximately 10 frames per second. Additionally, we report for the first time the characterization of phase retardation and diattenuation by a sample comprised of a stacked set of polarizing film and wave plate. The calculated optic axis orientation, phase retardation and diattenuation match well with expected values. The speed of each facet of the multi-functional OCT CPU-GPU hybrid acquisition system, intensity, phase retardation, and flow, were separately demonstrated by imaging a horseshoe crab lateral compound eye, a non-uniformly heated chicken muscle, and a microfluidic device. A mouse brain with thin skull preparation was imaged in vivo and demonstrated the capability of the system for live multi-functional OCT visualization.

© 2012 OSA

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2011 (2)

L. An, P. Li, T. T. Shen, and R. Wang, “High speed spectral domain optical coherence tomography for retinal imaging at 500,000 A‑lines per second,” Biomed. Opt. Express2(10), 2770–2783 (2011).
[CrossRef] [PubMed]

J. Rasakanthan, K. Sugden, and P. H. Tomlins, “Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit,” J. Biomed. Opt.16(2), 020505 (2011).
[CrossRef] [PubMed]

2010 (3)

S. Van der Jeught, A. Bradu, and A. G. Podoleanu, “Real-time resampling in Fourier domain optical coherence tomography using a graphics processing unit,” J. Biomed. Opt.15(3), 030511 (2010).
[CrossRef] [PubMed]

K. Zhang and J. U. Kang, “Real-time 4D signal processing and visualization using graphics processing unit on a regular nonlinear-k Fourier-domain OCT system,” Opt. Express18(11), 11772–11784 (2010).
[CrossRef] [PubMed]

T. Bonin, G. Franke, M. Hagen-Eggert, P. Koch, and G. Hüttmann, “In vivo Fourier-domain full-field OCT of the human retina with 1.5 million A-lines/s,” Opt. Lett.35(20), 3432–3434 (2010).
[CrossRef] [PubMed]

2009 (2)

A. E. Desjardins, B. J. Vakoc, M. J. Suter, S. H. Yun, G. J. Tearney, and B. E. Bouma, “Real-time FPGA processing for high-speed optical frequency domain imaging,” IEEE Trans. Med. Imaging28(9), 1468–1472 (2009).
[CrossRef] [PubMed]

Y. Watanabe and T. Itagaki, “Real-time display on Fourier domain optical coherence tomography system using a graphics processing unit,” J. Biomed. Opt.14(6), 060506 (2009).
[CrossRef] [PubMed]

2008 (2)

T. E. Ustun, N. V. Iftimia, R. D. Ferguson, and D. X. Hammer, “Real-time processing for Fourier domain optical coherence tomography using a field programmable gate array,” Rev. Sci. Instrum.79(11), 114301 (2008).
[CrossRef] [PubMed]

W. C. Kuo, M. W. Hsiung, J. J. Shyu, N. K. Chou, and P. N. Yang, “Assessment of arterial characteristics in human atherosclerosis by extracting optical properties from polarization-sensitive optical coherence tomography,” Opt. Express16(11), 8117–8125 (2008).
[CrossRef] [PubMed]

2007 (4)

S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
[CrossRef] [PubMed]

M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, “Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination,” J. Biomed. Opt.12(4), 041205 (2007).
[CrossRef] [PubMed]

M. Bonesi, D. Y. Churmakov, L. J. Ritchie, and I. V. Meglinski, “Turbulence monitoring with Doppler optical coherence tomography,” Laser Phys. Lett.4(4), 304–307 (2007).
[CrossRef]

P. O. Bagnaninchi, Y. Yang, N. Zghoul, N. Maffulli, R. K. Wang, and A. J. Haj, “Chitosan microchannel scaffolds for tendon tissue engineering characterized using optical coherence tomography,” Tissue Eng.13(2), 323–331 (2007).
[CrossRef] [PubMed]

2006 (1)

W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, “Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system,” J. Biomed. Opt.11(2), 021014 (2006).
[CrossRef] [PubMed]

2005 (2)

T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40(2), 85–94 (2005).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
[CrossRef] [PubMed]

2004 (8)

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Jones matrix analysis for a polarization-sensitive optical coherence tomography system using fiber-optic components,” Opt. Lett.29(21), 2512–2514 (2004).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “In vivo birefringence and thickness measurements of the human retinal nerve fiber layer using polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 121–125 (2004).
[CrossRef] [PubMed]

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
[CrossRef] [PubMed]

G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, “Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields,” Am. J. Ophthalmol.138(2), 218–225 (2004).
[CrossRef] [PubMed]

M. C. Pierce, J. Strasswimmer, B. H. Park, B. Cense, and J. F. de Boer, “Advances in optical coherence tomography imaging for dermatology,” J. Invest. Dermatol.123(3), 458–463 (2004).
[CrossRef] [PubMed]

N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
[CrossRef] [PubMed]

S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
[CrossRef] [PubMed]

M. C. Pierce, R. L. Sheridan, B. Hyle Park, B. Cense, and J. F. de Boer, “Collagen denaturation can be quantified in burned human skin using polarization-sensitive optical coherence tomography,” Burns30(6), 511–517 (2004).
[CrossRef] [PubMed]

2003 (7)

B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
[CrossRef] [PubMed]

B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
[CrossRef] [PubMed]

R. Leitgeb, C. K. Hitzenberger, and A. F. Fercher, “Performance of fourier domain vs. time domain optical coherence tomography,” Opt. Express11(8), 889–894 (2003).
[CrossRef] [PubMed]

J. F. de Boer, B. Cense, B. H. Park, M. C. Pierce, G. J. Tearney, and B. E. Bouma, “Improved signal-to-noise ratio in spectral-domain compared with time-domain optical coherence tomography,” Opt. Lett.28(21), 2067–2069 (2003).
[CrossRef] [PubMed]

M. A. Choma, M. V. Sarunic, C. H. Yang, and J. A. Izatt, “Sensitivity advantage of swept source and Fourier domain optical coherence tomography,” Opt. Express11(18), 2183–2189 (2003).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Real-time multi-functional optical coherence tomography,” Opt. Express11(7), 782–793 (2003).
[CrossRef] [PubMed]

S. H. Yun, G. J. Tearney, B. E. Bouma, B. H. Park, and J. F. de Boer, “High-speed spectral-domain optical coherence tomography at 1.3 um wavelength,” Opt. Express11(26), 3598–3604 (2003).
[CrossRef] [PubMed]

2002 (6)

D. Fried, J. Xie, S. Shafi, J. D. B. Featherstone, T. M. Breunig, and C. Le, “Imaging caries lesions and lesion progression with polarization sensitive optical coherence tomography,” J. Biomed. Opt.7(4), 618–627 (2002).
[CrossRef] [PubMed]

M. C. Pierce, B. Hyle Park, B. Cense, and J. F. de Boer, “Simultaneous intensity, birefringence, and flow measurements with high-speed fiber-based optical coherence tomography,” Opt. Lett.27(17), 1534–1536 (2002).
[CrossRef] [PubMed]

H. Ren, Z. Ding, Y. Zhao, J. Miao, J. S. Nelson, and Z. Chen, “Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin,” Opt. Lett.27(19), 1702–1704 (2002).
[CrossRef] [PubMed]

M. Wojtkowski, R. Leitgeb, A. Kowalczyk, T. Bajraszewski, and A. F. Fercher, “In vivo human retinal imaging by Fourier domain optical coherence tomography,” J. Biomed. Opt.7(3), 457–463 (2002).
[CrossRef] [PubMed]

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Invivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography,” Opt. Lett.27(18), 1610–1612 (2002).
[CrossRef] [PubMed]

2001 (2)

B. H. Park, C. Saxer, S. M. Srinivas, J. S. Nelson, and J. F. de Boer, “In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography,” J. Biomed. Opt.6(4), 474–479 (2001).
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W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med.7(4), 502–507 (2001).
[CrossRef] [PubMed]

2000 (4)

S. A. Boppart, M. E. Brezinski, and J. G. Fujimoto, “Optical coherence tomography imaging in developmental biology,” Methods Mol. Biol.135, 217–233 (2000).
[PubMed]

Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer, and J. S. Nelson, “Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity,” Opt. Lett.25(2), 114–116 (2000).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, “Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow,” Opt. Lett.25(18), 1358–1360 (2000).
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A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, “Polarization-sensitive optical coherence tomography of dental structures,” Caries Res.34(1), 59–69 (2000).
[CrossRef] [PubMed]

1999 (4)

T. G. van Leeuwen, M. D. Kulkarni, S. Yazdanfar, A. M. Rollins, and J. A. Izatt, “High-flow-velocity and shear-rate imaging by use of color Doppler optical coherence tomography,” Opt. Lett.24(22), 1584–1586 (1999).
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J. F. de Boer, T. E. Milner, and J. S. Nelson, “Determination of the depth-resolved Stokes parameters of light backscattered from turbid media by use of polarization-sensitive optical coherence tomography,” Opt. Lett.24(5), 300–302 (1999).
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T. Mitsui, “Dynamic range of optical reflectometry with spectral interferometry,” Jpn. J. Appl. Phys.38(Part 1, No. 10), 6133–6137 (1999).
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J. G. Fujimoto, S. A. Boppart, G. J. Tearney, B. E. Bouma, C. Pitris, and M. E. Brezinski, “High resolution in vivo intra-arterial imaging with optical coherence tomography,” Heart82(2), 128–133 (1999).
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1998 (1)

A. M. Rollins, S. Yazdanfar, M. Kulkarni, R. Ung-Arunyawee, and J. A. Izatt, “In vivo video rate optical coherence tomography,” Opt. Express3(6), 219–229 (1998).
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1997 (4)

J. Welzel, E. Lankenau, R. Birngruber, and R. Engelhardt, “Optical coherence tomography of the human skin,” J. Am. Acad. Dermatol.37(6), 958–963 (1997).
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J. F. de Boer, T. E. Milner, M. J. C. van Gemert, and J. S. Nelson, “Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography,” Opt. Lett.22(12), 934–936 (1997).
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Z. Chen, T. E. Milner, D. Dave, and J. S. Nelson, “Optical Doppler tomographic imaging of fluid flow velocity in highly scattering media,” Opt. Lett.22(1), 64–66 (1997).
[CrossRef] [PubMed]

J. A. Izatt, M. D. Kulkarni, S. Yazdanfar, J. K. Barton, and A. J. Welch, “In vivo bidirectional color Doppler flow imaging of picoliter blood volumes using optical coherence tomography,” Opt. Lett.22(18), 1439–1441 (1997).
[CrossRef] [PubMed]

1995 (2)

J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, “Optical biopsy and imaging using optical coherence tomography,” Nat. Med.1(9), 970–972 (1995).
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M. R. Hee, J. A. Izatt, E. A. Swanson, D. Huang, J. S. Schuman, C. P. Lin, C. A. Puliafito, and J. G. Fujimoto, “Optical coherence tomography of the human retina,” Arch. Ophthalmol.113(3), 325–332 (1995).
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1992 (1)

M. R. Hee, D. Huang, E. A. Swanson, and J. G. Fujimoto, “Polarization-sensitive low-coherence reflectometer for birefringence characterization and ranging,” J. Opt. Soc. Am. B9(6), 903–909 (1992).
[CrossRef]

1991 (1)

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science254(5035), 1178–1181 (1991).
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1954 (1)

R. W. Cox, ““Hibernoma”: The lipoma of immature adipose tissue,” J. Pathol. Bacteriol.68(2), 511–518 (1954).
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1947 (1)

E. Fischer, “Birefringence and ultrastructure of muscle,” Ann. N. Y. Acad. Sci.47(6Art 6), 783–797 (1947).
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Altmeyer, P.

T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40(2), 85–94 (2005).
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An, L.

L. An, P. Li, T. T. Shen, and R. Wang, “High speed spectral domain optical coherence tomography for retinal imaging at 500,000 A‑lines per second,” Biomed. Opt. Express2(10), 2770–2783 (2011).
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Aretz, H. T.

B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
[CrossRef] [PubMed]

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
[CrossRef] [PubMed]

Aydin, A.

G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, “Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields,” Am. J. Ophthalmol.138(2), 218–225 (2004).
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Bagnaninchi, P. O.

P. O. Bagnaninchi, Y. Yang, N. Zghoul, N. Maffulli, R. K. Wang, and A. J. Haj, “Chitosan microchannel scaffolds for tendon tissue engineering characterized using optical coherence tomography,” Tissue Eng.13(2), 323–331 (2007).
[CrossRef] [PubMed]

Bajraszewski, T.

M. Wojtkowski, R. Leitgeb, A. Kowalczyk, T. Bajraszewski, and A. F. Fercher, “In vivo human retinal imaging by Fourier domain optical coherence tomography,” J. Biomed. Opt.7(3), 457–463 (2002).
[CrossRef] [PubMed]

Barton, J. K.

J. A. Izatt, M. D. Kulkarni, S. Yazdanfar, J. K. Barton, and A. J. Welch, “In vivo bidirectional color Doppler flow imaging of picoliter blood volumes using optical coherence tomography,” Opt. Lett.22(18), 1439–1441 (1997).
[CrossRef] [PubMed]

Baumgartner, A.

A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, “Polarization-sensitive optical coherence tomography of dental structures,” Caries Res.34(1), 59–69 (2000).
[CrossRef] [PubMed]

Beaton, S. A.

G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, “Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields,” Am. J. Ophthalmol.138(2), 218–225 (2004).
[CrossRef] [PubMed]

Birngruber, R.

J. Welzel, E. Lankenau, R. Birngruber, and R. Engelhardt, “Optical coherence tomography of the human skin,” J. Am. Acad. Dermatol.37(6), 958–963 (1997).
[CrossRef] [PubMed]

Bonesi, M.

M. Bonesi, D. Y. Churmakov, L. J. Ritchie, and I. V. Meglinski, “Turbulence monitoring with Doppler optical coherence tomography,” Laser Phys. Lett.4(4), 304–307 (2007).
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Bonin, T.

T. Bonin, G. Franke, M. Hagen-Eggert, P. Koch, and G. Hüttmann, “In vivo Fourier-domain full-field OCT of the human retina with 1.5 million A-lines/s,” Opt. Lett.35(20), 3432–3434 (2010).
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Boppart, S. A.

W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, “Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system,” J. Biomed. Opt.11(2), 021014 (2006).
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S. A. Boppart, M. E. Brezinski, and J. G. Fujimoto, “Optical coherence tomography imaging in developmental biology,” Methods Mol. Biol.135, 217–233 (2000).
[PubMed]

J. G. Fujimoto, S. A. Boppart, G. J. Tearney, B. E. Bouma, C. Pitris, and M. E. Brezinski, “High resolution in vivo intra-arterial imaging with optical coherence tomography,” Heart82(2), 128–133 (1999).
[PubMed]

J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, “Optical biopsy and imaging using optical coherence tomography,” Nat. Med.1(9), 970–972 (1995).
[CrossRef] [PubMed]

Bouma, B.

N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
[CrossRef] [PubMed]

J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, “Optical biopsy and imaging using optical coherence tomography,” Nat. Med.1(9), 970–972 (1995).
[CrossRef] [PubMed]

Bouma, B. E.

A. E. Desjardins, B. J. Vakoc, M. J. Suter, S. H. Yun, G. J. Tearney, and B. E. Bouma, “Real-time FPGA processing for high-speed optical frequency domain imaging,” IEEE Trans. Med. Imaging28(9), 1468–1472 (2009).
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S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
[CrossRef] [PubMed]

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
[CrossRef] [PubMed]

J. F. de Boer, B. Cense, B. H. Park, M. C. Pierce, G. J. Tearney, and B. E. Bouma, “Improved signal-to-noise ratio in spectral-domain compared with time-domain optical coherence tomography,” Opt. Lett.28(21), 2067–2069 (2003).
[CrossRef] [PubMed]

B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
[CrossRef] [PubMed]

B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
[CrossRef] [PubMed]

S. H. Yun, G. J. Tearney, B. E. Bouma, B. H. Park, and J. F. de Boer, “High-speed spectral-domain optical coherence tomography at 1.3 um wavelength,” Opt. Express11(26), 3598–3604 (2003).
[CrossRef] [PubMed]

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
[CrossRef] [PubMed]

J. G. Fujimoto, S. A. Boppart, G. J. Tearney, B. E. Bouma, C. Pitris, and M. E. Brezinski, “High resolution in vivo intra-arterial imaging with optical coherence tomography,” Heart82(2), 128–133 (1999).
[PubMed]

Bradu, A.

S. Van der Jeught, A. Bradu, and A. G. Podoleanu, “Real-time resampling in Fourier domain optical coherence tomography using a graphics processing unit,” J. Biomed. Opt.15(3), 030511 (2010).
[CrossRef] [PubMed]

Bressner, J. E.

S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
[CrossRef] [PubMed]

Breunig, T. M.

D. Fried, J. Xie, S. Shafi, J. D. B. Featherstone, T. M. Breunig, and C. Le, “Imaging caries lesions and lesion progression with polarization sensitive optical coherence tomography,” J. Biomed. Opt.7(4), 618–627 (2002).
[CrossRef] [PubMed]

Brezinski, M. E.

S. A. Boppart, M. E. Brezinski, and J. G. Fujimoto, “Optical coherence tomography imaging in developmental biology,” Methods Mol. Biol.135, 217–233 (2000).
[PubMed]

J. G. Fujimoto, S. A. Boppart, G. J. Tearney, B. E. Bouma, C. Pitris, and M. E. Brezinski, “High resolution in vivo intra-arterial imaging with optical coherence tomography,” Heart82(2), 128–133 (1999).
[PubMed]

J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, “Optical biopsy and imaging using optical coherence tomography,” Nat. Med.1(9), 970–972 (1995).
[CrossRef] [PubMed]

Cense, B.

M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, “Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination,” J. Biomed. Opt.12(4), 041205 (2007).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
[CrossRef] [PubMed]

N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “In vivo birefringence and thickness measurements of the human retinal nerve fiber layer using polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 121–125 (2004).
[CrossRef] [PubMed]

M. C. Pierce, R. L. Sheridan, B. Hyle Park, B. Cense, and J. F. de Boer, “Collagen denaturation can be quantified in burned human skin using polarization-sensitive optical coherence tomography,” Burns30(6), 511–517 (2004).
[CrossRef] [PubMed]

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
[CrossRef] [PubMed]

M. C. Pierce, J. Strasswimmer, B. H. Park, B. Cense, and J. F. de Boer, “Advances in optical coherence tomography imaging for dermatology,” J. Invest. Dermatol.123(3), 458–463 (2004).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Jones matrix analysis for a polarization-sensitive optical coherence tomography system using fiber-optic components,” Opt. Lett.29(21), 2512–2514 (2004).
[CrossRef] [PubMed]

J. F. de Boer, B. Cense, B. H. Park, M. C. Pierce, G. J. Tearney, and B. E. Bouma, “Improved signal-to-noise ratio in spectral-domain compared with time-domain optical coherence tomography,” Opt. Lett.28(21), 2067–2069 (2003).
[CrossRef] [PubMed]

B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Real-time multi-functional optical coherence tomography,” Opt. Express11(7), 782–793 (2003).
[CrossRef] [PubMed]

M. C. Pierce, B. Hyle Park, B. Cense, and J. F. de Boer, “Simultaneous intensity, birefringence, and flow measurements with high-speed fiber-based optical coherence tomography,” Opt. Lett.27(17), 1534–1536 (2002).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Invivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography,” Opt. Lett.27(18), 1610–1612 (2002).
[CrossRef] [PubMed]

Chang, W.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science254(5035), 1178–1181 (1991).
[CrossRef] [PubMed]

Chen, T.

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
[CrossRef] [PubMed]

Chen, T. C.

M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, “Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination,” J. Biomed. Opt.12(4), 041205 (2007).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “In vivo birefringence and thickness measurements of the human retinal nerve fiber layer using polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 121–125 (2004).
[CrossRef] [PubMed]

N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
[CrossRef] [PubMed]

B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Invivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography,” Opt. Lett.27(18), 1610–1612 (2002).
[CrossRef] [PubMed]

Chen, Z.

S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
[CrossRef] [PubMed]

H. Ren, Z. Ding, Y. Zhao, J. Miao, J. S. Nelson, and Z. Chen, “Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin,” Opt. Lett.27(19), 1702–1704 (2002).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer, and J. S. Nelson, “Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity,” Opt. Lett.25(2), 114–116 (2000).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, “Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow,” Opt. Lett.25(18), 1358–1360 (2000).
[CrossRef] [PubMed]

Z. Chen, T. E. Milner, D. Dave, and J. S. Nelson, “Optical Doppler tomographic imaging of fluid flow velocity in highly scattering media,” Opt. Lett.22(1), 64–66 (1997).
[CrossRef] [PubMed]

Choi, K. B.

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
[CrossRef] [PubMed]

Choma, M. A.

M. A. Choma, M. V. Sarunic, C. H. Yang, and J. A. Izatt, “Sensitivity advantage of swept source and Fourier domain optical coherence tomography,” Opt. Express11(18), 2183–2189 (2003).
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Chou, N. K.

W. C. Kuo, M. W. Hsiung, J. J. Shyu, N. K. Chou, and P. N. Yang, “Assessment of arterial characteristics in human atherosclerosis by extracting optical properties from polarization-sensitive optical coherence tomography,” Opt. Express16(11), 8117–8125 (2008).
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B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
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T. E. Ustun, N. V. Iftimia, R. D. Ferguson, and D. X. Hammer, “Real-time processing for Fourier domain optical coherence tomography using a field programmable gate array,” Rev. Sci. Instrum.79(11), 114301 (2008).
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R. Leitgeb, C. K. Hitzenberger, and A. F. Fercher, “Performance of fourier domain vs. time domain optical coherence tomography,” Opt. Express11(8), 889–894 (2003).
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A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, “Polarization-sensitive optical coherence tomography of dental structures,” Caries Res.34(1), 59–69 (2000).
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T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40(2), 85–94 (2005).
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S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
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T. Bonin, G. Franke, M. Hagen-Eggert, P. Koch, and G. Hüttmann, “In vivo Fourier-domain full-field OCT of the human retina with 1.5 million A-lines/s,” Opt. Lett.35(20), 3432–3434 (2010).
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Hyle Park, B.

M. C. Pierce, R. L. Sheridan, B. Hyle Park, B. Cense, and J. F. de Boer, “Collagen denaturation can be quantified in burned human skin using polarization-sensitive optical coherence tomography,” Burns30(6), 511–517 (2004).
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M. C. Pierce, B. Hyle Park, B. Cense, and J. F. de Boer, “Simultaneous intensity, birefringence, and flow measurements with high-speed fiber-based optical coherence tomography,” Opt. Lett.27(17), 1534–1536 (2002).
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T. E. Ustun, N. V. Iftimia, R. D. Ferguson, and D. X. Hammer, “Real-time processing for Fourier domain optical coherence tomography using a field programmable gate array,” Rev. Sci. Instrum.79(11), 114301 (2008).
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B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
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Jung, W. Q.

S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
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B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
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S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
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M. Wojtkowski, R. Leitgeb, A. Kowalczyk, T. Bajraszewski, and A. F. Fercher, “In vivo human retinal imaging by Fourier domain optical coherence tomography,” J. Biomed. Opt.7(3), 457–463 (2002).
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A. M. Rollins, S. Yazdanfar, M. Kulkarni, R. Ung-Arunyawee, and J. A. Izatt, “In vivo video rate optical coherence tomography,” Opt. Express3(6), 219–229 (1998).
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T. G. van Leeuwen, M. D. Kulkarni, S. Yazdanfar, A. M. Rollins, and J. A. Izatt, “High-flow-velocity and shear-rate imaging by use of color Doppler optical coherence tomography,” Opt. Lett.24(22), 1584–1586 (1999).
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J. A. Izatt, M. D. Kulkarni, S. Yazdanfar, J. K. Barton, and A. J. Welch, “In vivo bidirectional color Doppler flow imaging of picoliter blood volumes using optical coherence tomography,” Opt. Lett.22(18), 1439–1441 (1997).
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W. C. Kuo, M. W. Hsiung, J. J. Shyu, N. K. Chou, and P. N. Yang, “Assessment of arterial characteristics in human atherosclerosis by extracting optical properties from polarization-sensitive optical coherence tomography,” Opt. Express16(11), 8117–8125 (2008).
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J. Welzel, E. Lankenau, R. Birngruber, and R. Engelhardt, “Optical coherence tomography of the human skin,” J. Am. Acad. Dermatol.37(6), 958–963 (1997).
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D. Fried, J. Xie, S. Shafi, J. D. B. Featherstone, T. M. Breunig, and C. Le, “Imaging caries lesions and lesion progression with polarization sensitive optical coherence tomography,” J. Biomed. Opt.7(4), 618–627 (2002).
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R. Leitgeb, C. K. Hitzenberger, and A. F. Fercher, “Performance of fourier domain vs. time domain optical coherence tomography,” Opt. Express11(8), 889–894 (2003).
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L. An, P. Li, T. T. Shen, and R. Wang, “High speed spectral domain optical coherence tomography for retinal imaging at 500,000 A‑lines per second,” Biomed. Opt. Express2(10), 2770–2783 (2011).
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M. R. Hee, J. A. Izatt, E. A. Swanson, D. Huang, J. S. Schuman, C. P. Lin, C. A. Puliafito, and J. G. Fujimoto, “Optical coherence tomography of the human retina,” Arch. Ophthalmol.113(3), 325–332 (1995).
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W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, “Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system,” J. Biomed. Opt.11(2), 021014 (2006).
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B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
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P. O. Bagnaninchi, Y. Yang, N. Zghoul, N. Maffulli, R. K. Wang, and A. J. Haj, “Chitosan microchannel scaffolds for tendon tissue engineering characterized using optical coherence tomography,” Tissue Eng.13(2), 323–331 (2007).
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W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, “Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system,” J. Biomed. Opt.11(2), 021014 (2006).
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M. Bonesi, D. Y. Churmakov, L. J. Ritchie, and I. V. Meglinski, “Turbulence monitoring with Doppler optical coherence tomography,” Laser Phys. Lett.4(4), 304–307 (2007).
[CrossRef]

Miao, J.

H. Ren, Z. Ding, Y. Zhao, J. Miao, J. S. Nelson, and Z. Chen, “Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin,” Opt. Lett.27(19), 1702–1704 (2002).
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J. F. de Boer, T. E. Milner, and J. S. Nelson, “Determination of the depth-resolved Stokes parameters of light backscattered from turbid media by use of polarization-sensitive optical coherence tomography,” Opt. Lett.24(5), 300–302 (1999).
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J. F. de Boer, T. E. Milner, M. J. C. van Gemert, and J. S. Nelson, “Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography,” Opt. Lett.22(12), 934–936 (1997).
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Z. Chen, T. E. Milner, D. Dave, and J. S. Nelson, “Optical Doppler tomographic imaging of fluid flow velocity in highly scattering media,” Opt. Lett.22(1), 64–66 (1997).
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W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med.7(4), 502–507 (2001).
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A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, “Polarization-sensitive optical coherence tomography of dental structures,” Caries Res.34(1), 59–69 (2000).
[CrossRef] [PubMed]

Moussa, G.

T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40(2), 85–94 (2005).
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Mujat, M.

M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, “Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination,” J. Biomed. Opt.12(4), 041205 (2007).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
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S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
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B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
[CrossRef] [PubMed]

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N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
[CrossRef] [PubMed]

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
[CrossRef] [PubMed]

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S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
[CrossRef] [PubMed]

H. Ren, Z. Ding, Y. Zhao, J. Miao, J. S. Nelson, and Z. Chen, “Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin,” Opt. Lett.27(19), 1702–1704 (2002).
[CrossRef] [PubMed]

B. H. Park, C. Saxer, S. M. Srinivas, J. S. Nelson, and J. F. de Boer, “In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography,” J. Biomed. Opt.6(4), 474–479 (2001).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, “Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow,” Opt. Lett.25(18), 1358–1360 (2000).
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Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer, and J. S. Nelson, “Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity,” Opt. Lett.25(2), 114–116 (2000).
[CrossRef] [PubMed]

J. F. de Boer, T. E. Milner, and J. S. Nelson, “Determination of the depth-resolved Stokes parameters of light backscattered from turbid media by use of polarization-sensitive optical coherence tomography,” Opt. Lett.24(5), 300–302 (1999).
[CrossRef] [PubMed]

J. F. de Boer, T. E. Milner, M. J. C. van Gemert, and J. S. Nelson, “Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography,” Opt. Lett.22(12), 934–936 (1997).
[CrossRef] [PubMed]

Z. Chen, T. E. Milner, D. Dave, and J. S. Nelson, “Optical Doppler tomographic imaging of fluid flow velocity in highly scattering media,” Opt. Lett.22(1), 64–66 (1997).
[CrossRef] [PubMed]

Park, B. H.

S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
[CrossRef] [PubMed]

M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, “Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination,” J. Biomed. Opt.12(4), 041205 (2007).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “In vivo birefringence and thickness measurements of the human retinal nerve fiber layer using polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 121–125 (2004).
[CrossRef] [PubMed]

N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
[CrossRef] [PubMed]

M. C. Pierce, J. Strasswimmer, B. H. Park, B. Cense, and J. F. de Boer, “Advances in optical coherence tomography imaging for dermatology,” J. Invest. Dermatol.123(3), 458–463 (2004).
[CrossRef] [PubMed]

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Jones matrix analysis for a polarization-sensitive optical coherence tomography system using fiber-optic components,” Opt. Lett.29(21), 2512–2514 (2004).
[CrossRef] [PubMed]

S. H. Yun, G. J. Tearney, B. E. Bouma, B. H. Park, and J. F. de Boer, “High-speed spectral-domain optical coherence tomography at 1.3 um wavelength,” Opt. Express11(26), 3598–3604 (2003).
[CrossRef] [PubMed]

J. F. de Boer, B. Cense, B. H. Park, M. C. Pierce, G. J. Tearney, and B. E. Bouma, “Improved signal-to-noise ratio in spectral-domain compared with time-domain optical coherence tomography,” Opt. Lett.28(21), 2067–2069 (2003).
[CrossRef] [PubMed]

B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Real-time multi-functional optical coherence tomography,” Opt. Express11(7), 782–793 (2003).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Invivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography,” Opt. Lett.27(18), 1610–1612 (2002).
[CrossRef] [PubMed]

B. H. Park, C. Saxer, S. M. Srinivas, J. S. Nelson, and J. F. de Boer, “In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography,” J. Biomed. Opt.6(4), 474–479 (2001).
[CrossRef] [PubMed]

Park, H.

S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
[CrossRef] [PubMed]

Park, S. J.

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
[CrossRef] [PubMed]

Park, S. W.

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
[CrossRef] [PubMed]

Pierce, M.

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
[CrossRef] [PubMed]

Pierce, M. C.

S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
[CrossRef] [PubMed]

M. C. Pierce, R. L. Sheridan, B. Hyle Park, B. Cense, and J. F. de Boer, “Collagen denaturation can be quantified in burned human skin using polarization-sensitive optical coherence tomography,” Burns30(6), 511–517 (2004).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “In vivo birefringence and thickness measurements of the human retinal nerve fiber layer using polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 121–125 (2004).
[CrossRef] [PubMed]

N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
[CrossRef] [PubMed]

M. C. Pierce, J. Strasswimmer, B. H. Park, B. Cense, and J. F. de Boer, “Advances in optical coherence tomography imaging for dermatology,” J. Invest. Dermatol.123(3), 458–463 (2004).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Jones matrix analysis for a polarization-sensitive optical coherence tomography system using fiber-optic components,” Opt. Lett.29(21), 2512–2514 (2004).
[CrossRef] [PubMed]

J. F. de Boer, B. Cense, B. H. Park, M. C. Pierce, G. J. Tearney, and B. E. Bouma, “Improved signal-to-noise ratio in spectral-domain compared with time-domain optical coherence tomography,” Opt. Lett.28(21), 2067–2069 (2003).
[CrossRef] [PubMed]

B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Real-time multi-functional optical coherence tomography,” Opt. Express11(7), 782–793 (2003).
[CrossRef] [PubMed]

M. C. Pierce, B. Hyle Park, B. Cense, and J. F. de Boer, “Simultaneous intensity, birefringence, and flow measurements with high-speed fiber-based optical coherence tomography,” Opt. Lett.27(17), 1534–1536 (2002).
[CrossRef] [PubMed]

B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Invivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography,” Opt. Lett.27(18), 1610–1612 (2002).
[CrossRef] [PubMed]

Pitris, C.

J. G. Fujimoto, S. A. Boppart, G. J. Tearney, B. E. Bouma, C. Pitris, and M. E. Brezinski, “High resolution in vivo intra-arterial imaging with optical coherence tomography,” Heart82(2), 128–133 (1999).
[PubMed]

Podoleanu, A. G.

S. Van der Jeught, A. Bradu, and A. G. Podoleanu, “Real-time resampling in Fourier domain optical coherence tomography using a graphics processing unit,” J. Biomed. Opt.15(3), 030511 (2010).
[CrossRef] [PubMed]

Pomerantsev, E.

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
[CrossRef] [PubMed]

Price, L. L.

G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, “Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields,” Am. J. Ophthalmol.138(2), 218–225 (2004).
[CrossRef] [PubMed]

Puliafito, C. A.

M. R. Hee, J. A. Izatt, E. A. Swanson, D. Huang, J. S. Schuman, C. P. Lin, C. A. Puliafito, and J. G. Fujimoto, “Optical coherence tomography of the human retina,” Arch. Ophthalmol.113(3), 325–332 (1995).
[CrossRef] [PubMed]

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science254(5035), 1178–1181 (1991).
[CrossRef] [PubMed]

Ralston, T. S.

W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, “Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system,” J. Biomed. Opt.11(2), 021014 (2006).
[CrossRef] [PubMed]

Rasakanthan, J.

J. Rasakanthan, K. Sugden, and P. H. Tomlins, “Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit,” J. Biomed. Opt.16(2), 020505 (2011).
[CrossRef] [PubMed]

Ren, H.

H. Ren, Z. Ding, Y. Zhao, J. Miao, J. S. Nelson, and Z. Chen, “Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin,” Opt. Lett.27(19), 1702–1704 (2002).
[CrossRef] [PubMed]

Ritchie, L. J.

M. Bonesi, D. Y. Churmakov, L. J. Ritchie, and I. V. Meglinski, “Turbulence monitoring with Doppler optical coherence tomography,” Laser Phys. Lett.4(4), 304–307 (2007).
[CrossRef]

Robl, B.

A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, “Polarization-sensitive optical coherence tomography of dental structures,” Caries Res.34(1), 59–69 (2000).
[CrossRef] [PubMed]

Rollins, A. M.

T. G. van Leeuwen, M. D. Kulkarni, S. Yazdanfar, A. M. Rollins, and J. A. Izatt, “High-flow-velocity and shear-rate imaging by use of color Doppler optical coherence tomography,” Opt. Lett.24(22), 1584–1586 (1999).
[CrossRef] [PubMed]

A. M. Rollins, S. Yazdanfar, M. Kulkarni, R. Ung-Arunyawee, and J. A. Izatt, “In vivo video rate optical coherence tomography,” Opt. Express3(6), 219–229 (1998).
[CrossRef] [PubMed]

Sand, D.

T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40(2), 85–94 (2005).
[CrossRef] [PubMed]

Sand, M.

T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40(2), 85–94 (2005).
[CrossRef] [PubMed]

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M. A. Choma, M. V. Sarunic, C. H. Yang, and J. A. Izatt, “Sensitivity advantage of swept source and Fourier domain optical coherence tomography,” Opt. Express11(18), 2183–2189 (2003).
[CrossRef] [PubMed]

Sattmann, H.

A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, “Polarization-sensitive optical coherence tomography of dental structures,” Caries Res.34(1), 59–69 (2000).
[CrossRef] [PubMed]

Saxer, C.

B. H. Park, C. Saxer, S. M. Srinivas, J. S. Nelson, and J. F. de Boer, “In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography,” J. Biomed. Opt.6(4), 474–479 (2001).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer, and J. S. Nelson, “Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity,” Opt. Lett.25(2), 114–116 (2000).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, “Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow,” Opt. Lett.25(18), 1358–1360 (2000).
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I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
[CrossRef] [PubMed]

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G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, “Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields,” Am. J. Ophthalmol.138(2), 218–225 (2004).
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W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med.7(4), 502–507 (2001).
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M. R. Hee, J. A. Izatt, E. A. Swanson, D. Huang, J. S. Schuman, C. P. Lin, C. A. Puliafito, and J. G. Fujimoto, “Optical coherence tomography of the human retina,” Arch. Ophthalmol.113(3), 325–332 (1995).
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D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science254(5035), 1178–1181 (1991).
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I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
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D. Fried, J. Xie, S. Shafi, J. D. B. Featherstone, T. M. Breunig, and C. Le, “Imaging caries lesions and lesion progression with polarization sensitive optical coherence tomography,” J. Biomed. Opt.7(4), 618–627 (2002).
[CrossRef] [PubMed]

Shen, Q.

Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, “Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow,” Opt. Lett.25(18), 1358–1360 (2000).
[CrossRef] [PubMed]

Shen, T. T.

L. An, P. Li, T. T. Shen, and R. Wang, “High speed spectral domain optical coherence tomography for retinal imaging at 500,000 A‑lines per second,” Biomed. Opt. Express2(10), 2770–2783 (2011).
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M. C. Pierce, R. L. Sheridan, B. Hyle Park, B. Cense, and J. F. de Boer, “Collagen denaturation can be quantified in burned human skin using polarization-sensitive optical coherence tomography,” Burns30(6), 511–517 (2004).
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B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
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I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound,” J. Am. Coll. Cardiol.39(4), 604–609 (2002).
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W. C. Kuo, M. W. Hsiung, J. J. Shyu, N. K. Chou, and P. N. Yang, “Assessment of arterial characteristics in human atherosclerosis by extracting optical properties from polarization-sensitive optical coherence tomography,” Opt. Express16(11), 8117–8125 (2008).
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J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, “Optical biopsy and imaging using optical coherence tomography,” Nat. Med.1(9), 970–972 (1995).
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A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, “Polarization-sensitive optical coherence tomography of dental structures,” Caries Res.34(1), 59–69 (2000).
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S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
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B. H. Park, C. Saxer, S. M. Srinivas, J. S. Nelson, and J. F. de Boer, “In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography,” J. Biomed. Opt.6(4), 474–479 (2001).
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G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, “Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields,” Am. J. Ophthalmol.138(2), 218–225 (2004).
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D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science254(5035), 1178–1181 (1991).
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M. C. Pierce, J. Strasswimmer, B. H. Park, B. Cense, and J. F. de Boer, “Advances in optical coherence tomography imaging for dermatology,” J. Invest. Dermatol.123(3), 458–463 (2004).
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J. Rasakanthan, K. Sugden, and P. H. Tomlins, “Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit,” J. Biomed. Opt.16(2), 020505 (2011).
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A. E. Desjardins, B. J. Vakoc, M. J. Suter, S. H. Yun, G. J. Tearney, and B. E. Bouma, “Real-time FPGA processing for high-speed optical frequency domain imaging,” IEEE Trans. Med. Imaging28(9), 1468–1472 (2009).
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M. R. Hee, J. A. Izatt, E. A. Swanson, D. Huang, J. S. Schuman, C. P. Lin, C. A. Puliafito, and J. G. Fujimoto, “Optical coherence tomography of the human retina,” Arch. Ophthalmol.113(3), 325–332 (1995).
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J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, “Optical biopsy and imaging using optical coherence tomography,” Nat. Med.1(9), 970–972 (1995).
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M. R. Hee, D. Huang, E. A. Swanson, and J. G. Fujimoto, “Polarization-sensitive low-coherence reflectometer for birefringence characterization and ranging,” J. Opt. Soc. Am. B9(6), 903–909 (1992).
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D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science254(5035), 1178–1181 (1991).
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Tearney, G. J.

A. E. Desjardins, B. J. Vakoc, M. J. Suter, S. H. Yun, G. J. Tearney, and B. E. Bouma, “Real-time FPGA processing for high-speed optical frequency domain imaging,” IEEE Trans. Med. Imaging28(9), 1468–1472 (2009).
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S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
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B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
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N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
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B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
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J. F. de Boer, B. Cense, B. H. Park, M. C. Pierce, G. J. Tearney, and B. E. Bouma, “Improved signal-to-noise ratio in spectral-domain compared with time-domain optical coherence tomography,” Opt. Lett.28(21), 2067–2069 (2003).
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B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
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B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
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S. H. Yun, G. J. Tearney, B. E. Bouma, B. H. Park, and J. F. de Boer, “High-speed spectral-domain optical coherence tomography at 1.3 um wavelength,” Opt. Express11(26), 3598–3604 (2003).
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J. G. Fujimoto, S. A. Boppart, G. J. Tearney, B. E. Bouma, C. Pitris, and M. E. Brezinski, “High resolution in vivo intra-arterial imaging with optical coherence tomography,” Heart82(2), 128–133 (1999).
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J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, “Optical biopsy and imaging using optical coherence tomography,” Nat. Med.1(9), 970–972 (1995).
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J. Rasakanthan, K. Sugden, and P. H. Tomlins, “Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit,” J. Biomed. Opt.16(2), 020505 (2011).
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A. M. Rollins, S. Yazdanfar, M. Kulkarni, R. Ung-Arunyawee, and J. A. Izatt, “In vivo video rate optical coherence tomography,” Opt. Express3(6), 219–229 (1998).
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A. E. Desjardins, B. J. Vakoc, M. J. Suter, S. H. Yun, G. J. Tearney, and B. E. Bouma, “Real-time FPGA processing for high-speed optical frequency domain imaging,” IEEE Trans. Med. Imaging28(9), 1468–1472 (2009).
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S. Van der Jeught, A. Bradu, and A. G. Podoleanu, “Real-time resampling in Fourier domain optical coherence tomography using a graphics processing unit,” J. Biomed. Opt.15(3), 030511 (2010).
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J. F. de Boer, T. E. Milner, M. J. C. van Gemert, and J. S. Nelson, “Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography,” Opt. Lett.22(12), 934–936 (1997).
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T. G. van Leeuwen, M. D. Kulkarni, S. Yazdanfar, A. M. Rollins, and J. A. Izatt, “High-flow-velocity and shear-rate imaging by use of color Doppler optical coherence tomography,” Opt. Lett.24(22), 1584–1586 (1999).
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Wang, R.

L. An, P. Li, T. T. Shen, and R. Wang, “High speed spectral domain optical coherence tomography for retinal imaging at 500,000 A‑lines per second,” Biomed. Opt. Express2(10), 2770–2783 (2011).
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Wang, R. K.

P. O. Bagnaninchi, Y. Yang, N. Zghoul, N. Maffulli, R. K. Wang, and A. J. Haj, “Chitosan microchannel scaffolds for tendon tissue engineering characterized using optical coherence tomography,” Tissue Eng.13(2), 323–331 (2007).
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Y. Watanabe and T. Itagaki, “Real-time display on Fourier domain optical coherence tomography system using a graphics processing unit,” J. Biomed. Opt.14(6), 060506 (2009).
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J. A. Izatt, M. D. Kulkarni, S. Yazdanfar, J. K. Barton, and A. J. Welch, “In vivo bidirectional color Doppler flow imaging of picoliter blood volumes using optical coherence tomography,” Opt. Lett.22(18), 1439–1441 (1997).
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B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
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Whittaker, P.

S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
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M. Wojtkowski, R. Leitgeb, A. Kowalczyk, T. Bajraszewski, and A. F. Fercher, “In vivo human retinal imaging by Fourier domain optical coherence tomography,” J. Biomed. Opt.7(3), 457–463 (2002).
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G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, “Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields,” Am. J. Ophthalmol.138(2), 218–225 (2004).
[CrossRef] [PubMed]

Xiang, S.

Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, “Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow,” Opt. Lett.25(18), 1358–1360 (2000).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer, and J. S. Nelson, “Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity,” Opt. Lett.25(2), 114–116 (2000).
[CrossRef] [PubMed]

Xie, J.

D. Fried, J. Xie, S. Shafi, J. D. B. Featherstone, T. M. Breunig, and C. Le, “Imaging caries lesions and lesion progression with polarization sensitive optical coherence tomography,” J. Biomed. Opt.7(4), 618–627 (2002).
[CrossRef] [PubMed]

Yabushita, H.

B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
[CrossRef] [PubMed]

Yang, C. H.

M. A. Choma, M. V. Sarunic, C. H. Yang, and J. A. Izatt, “Sensitivity advantage of swept source and Fourier domain optical coherence tomography,” Opt. Express11(18), 2183–2189 (2003).
[CrossRef] [PubMed]

Yang, P. N.

W. C. Kuo, M. W. Hsiung, J. J. Shyu, N. K. Chou, and P. N. Yang, “Assessment of arterial characteristics in human atherosclerosis by extracting optical properties from polarization-sensitive optical coherence tomography,” Opt. Express16(11), 8117–8125 (2008).
[CrossRef] [PubMed]

Yang, Y.

P. O. Bagnaninchi, Y. Yang, N. Zghoul, N. Maffulli, R. K. Wang, and A. J. Haj, “Chitosan microchannel scaffolds for tendon tissue engineering characterized using optical coherence tomography,” Tissue Eng.13(2), 323–331 (2007).
[CrossRef] [PubMed]

Yazdanfar, S.

T. G. van Leeuwen, M. D. Kulkarni, S. Yazdanfar, A. M. Rollins, and J. A. Izatt, “High-flow-velocity and shear-rate imaging by use of color Doppler optical coherence tomography,” Opt. Lett.24(22), 1584–1586 (1999).
[CrossRef] [PubMed]

A. M. Rollins, S. Yazdanfar, M. Kulkarni, R. Ung-Arunyawee, and J. A. Izatt, “In vivo video rate optical coherence tomography,” Opt. Express3(6), 219–229 (1998).
[CrossRef] [PubMed]

J. A. Izatt, M. D. Kulkarni, S. Yazdanfar, J. K. Barton, and A. J. Welch, “In vivo bidirectional color Doppler flow imaging of picoliter blood volumes using optical coherence tomography,” Opt. Lett.22(18), 1439–1441 (1997).
[CrossRef] [PubMed]

Yun, S.

B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
[CrossRef] [PubMed]

Yun, S. H.

A. E. Desjardins, B. J. Vakoc, M. J. Suter, S. H. Yun, G. J. Tearney, and B. E. Bouma, “Real-time FPGA processing for high-speed optical frequency domain imaging,” IEEE Trans. Med. Imaging28(9), 1468–1472 (2009).
[CrossRef] [PubMed]

N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
[CrossRef] [PubMed]

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
[CrossRef] [PubMed]

S. H. Yun, G. J. Tearney, B. E. Bouma, B. H. Park, and J. F. de Boer, “High-speed spectral-domain optical coherence tomography at 1.3 um wavelength,” Opt. Express11(26), 3598–3604 (2003).
[CrossRef] [PubMed]

Zghoul, N.

P. O. Bagnaninchi, Y. Yang, N. Zghoul, N. Maffulli, R. K. Wang, and A. J. Haj, “Chitosan microchannel scaffolds for tendon tissue engineering characterized using optical coherence tomography,” Tissue Eng.13(2), 323–331 (2007).
[CrossRef] [PubMed]

Zhang, J.

S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
[CrossRef] [PubMed]

Zhang, K.

K. Zhang and J. U. Kang, “Real-time 4D signal processing and visualization using graphics processing unit on a regular nonlinear-k Fourier-domain OCT system,” Opt. Express18(11), 11772–11784 (2010).
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H. Ren, Z. Ding, Y. Zhao, J. Miao, J. S. Nelson, and Z. Chen, “Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin,” Opt. Lett.27(19), 1702–1704 (2002).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer, and J. S. Nelson, “Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity,” Opt. Lett.25(2), 114–116 (2000).
[CrossRef] [PubMed]

Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, “Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow,” Opt. Lett.25(18), 1358–1360 (2000).
[CrossRef] [PubMed]

Am. J. Ophthalmol. (1)

G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, “Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields,” Am. J. Ophthalmol.138(2), 218–225 (2004).
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Ann. N. Y. Acad. Sci. (1)

E. Fischer, “Birefringence and ultrastructure of muscle,” Ann. N. Y. Acad. Sci.47(6Art 6), 783–797 (1947).
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Arch. Ophthalmol. (1)

M. R. Hee, J. A. Izatt, E. A. Swanson, D. Huang, J. S. Schuman, C. P. Lin, C. A. Puliafito, and J. G. Fujimoto, “Optical coherence tomography of the human retina,” Arch. Ophthalmol.113(3), 325–332 (1995).
[CrossRef] [PubMed]

Biomed. Opt. Express (1)

L. An, P. Li, T. T. Shen, and R. Wang, “High speed spectral domain optical coherence tomography for retinal imaging at 500,000 A‑lines per second,” Biomed. Opt. Express2(10), 2770–2783 (2011).
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Burns (1)

M. C. Pierce, R. L. Sheridan, B. Hyle Park, B. Cense, and J. F. de Boer, “Collagen denaturation can be quantified in burned human skin using polarization-sensitive optical coherence tomography,” Burns30(6), 511–517 (2004).
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Caries Res. (1)

A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, “Polarization-sensitive optical coherence tomography of dental structures,” Caries Res.34(1), 59–69 (2000).
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B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, “Evaluation of intracoronary stenting by intravascular optical coherence tomography,” Heart89(3), 317–320 (2003).
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J. G. Fujimoto, S. A. Boppart, G. J. Tearney, B. E. Bouma, C. Pitris, and M. E. Brezinski, “High resolution in vivo intra-arterial imaging with optical coherence tomography,” Heart82(2), 128–133 (1999).
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IEEE Trans. Med. Imaging (1)

A. E. Desjardins, B. J. Vakoc, M. J. Suter, S. H. Yun, G. J. Tearney, and B. E. Bouma, “Real-time FPGA processing for high-speed optical frequency domain imaging,” IEEE Trans. Med. Imaging28(9), 1468–1472 (2009).
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J. Am. Acad. Dermatol. (1)

J. Welzel, E. Lankenau, R. Birngruber, and R. Engelhardt, “Optical coherence tomography of the human skin,” J. Am. Acad. Dermatol.37(6), 958–963 (1997).
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S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, “Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography,” J. Am. Coll. Cardiol.49(13), 1474–1481 (2007).
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J. Biomed. Opt. (10)

B. H. Park, C. Saxer, S. M. Srinivas, J. S. Nelson, and J. F. de Boer, “In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography,” J. Biomed. Opt.6(4), 474–479 (2001).
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S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, “Determination of burn depth by polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 207–212 (2004).
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W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, “Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system,” J. Biomed. Opt.11(2), 021014 (2006).
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M. Wojtkowski, R. Leitgeb, A. Kowalczyk, T. Bajraszewski, and A. F. Fercher, “In vivo human retinal imaging by Fourier domain optical coherence tomography,” J. Biomed. Opt.7(3), 457–463 (2002).
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Y. Watanabe and T. Itagaki, “Real-time display on Fourier domain optical coherence tomography system using a graphics processing unit,” J. Biomed. Opt.14(6), 060506 (2009).
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S. Van der Jeught, A. Bradu, and A. G. Podoleanu, “Real-time resampling in Fourier domain optical coherence tomography using a graphics processing unit,” J. Biomed. Opt.15(3), 030511 (2010).
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B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “In vivo birefringence and thickness measurements of the human retinal nerve fiber layer using polarization-sensitive optical coherence tomography,” J. Biomed. Opt.9(1), 121–125 (2004).
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D. Fried, J. Xie, S. Shafi, J. D. B. Featherstone, T. M. Breunig, and C. Le, “Imaging caries lesions and lesion progression with polarization sensitive optical coherence tomography,” J. Biomed. Opt.7(4), 618–627 (2002).
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J. Rasakanthan, K. Sugden, and P. H. Tomlins, “Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit,” J. Biomed. Opt.16(2), 020505 (2011).
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M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, “Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination,” J. Biomed. Opt.12(4), 041205 (2007).
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J. Dermatol. Sci. (1)

T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, “Applications of optical coherence tomography in dermatology,” J. Dermatol. Sci.40(2), 85–94 (2005).
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J. Invest. Dermatol. (1)

M. C. Pierce, J. Strasswimmer, B. H. Park, B. Cense, and J. F. de Boer, “Advances in optical coherence tomography imaging for dermatology,” J. Invest. Dermatol.123(3), 458–463 (2004).
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J. Opt. Soc. Am. B (1)

M. R. Hee, D. Huang, E. A. Swanson, and J. G. Fujimoto, “Polarization-sensitive low-coherence reflectometer for birefringence characterization and ranging,” J. Opt. Soc. Am. B9(6), 903–909 (1992).
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Jpn. J. Appl. Phys. (1)

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Laser Phys. Lett. (1)

M. Bonesi, D. Y. Churmakov, L. J. Ritchie, and I. V. Meglinski, “Turbulence monitoring with Doppler optical coherence tomography,” Laser Phys. Lett.4(4), 304–307 (2007).
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Methods Mol. Biol. (1)

S. A. Boppart, M. E. Brezinski, and J. G. Fujimoto, “Optical coherence tomography imaging in developmental biology,” Methods Mol. Biol.135, 217–233 (2000).
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J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, “Optical biopsy and imaging using optical coherence tomography,” Nat. Med.1(9), 970–972 (1995).
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Opt. Express (11)

B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, “Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography,” Opt. Express12(11), 2435–2447 (2004).
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R. Leitgeb, C. K. Hitzenberger, and A. F. Fercher, “Performance of fourier domain vs. time domain optical coherence tomography,” Opt. Express11(8), 889–894 (2003).
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M. A. Choma, M. V. Sarunic, C. H. Yang, and J. A. Izatt, “Sensitivity advantage of swept source and Fourier domain optical coherence tomography,” Opt. Express11(18), 2183–2189 (2003).
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B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, “In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography,” Opt. Express11(25), 3490–3497 (2003).
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N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, “In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve,” Opt. Express12(3), 367–376 (2004).
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W. C. Kuo, M. W. Hsiung, J. J. Shyu, N. K. Chou, and P. N. Yang, “Assessment of arterial characteristics in human atherosclerosis by extracting optical properties from polarization-sensitive optical coherence tomography,” Opt. Express16(11), 8117–8125 (2008).
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S. H. Yun, G. J. Tearney, B. E. Bouma, B. H. Park, and J. F. de Boer, “High-speed spectral-domain optical coherence tomography at 1.3 um wavelength,” Opt. Express11(26), 3598–3604 (2003).
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B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Real-time multi-functional optical coherence tomography,” Opt. Express11(7), 782–793 (2003).
[CrossRef] [PubMed]

B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm,” Opt. Express13(11), 3931–3944 (2005).
[CrossRef] [PubMed]

K. Zhang and J. U. Kang, “Real-time 4D signal processing and visualization using graphics processing unit on a regular nonlinear-k Fourier-domain OCT system,” Opt. Express18(11), 11772–11784 (2010).
[CrossRef] [PubMed]

Opt. Lett. (13)

B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, “Jones matrix analysis for a polarization-sensitive optical coherence tomography system using fiber-optic components,” Opt. Lett.29(21), 2512–2514 (2004).
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T. Bonin, G. Franke, M. Hagen-Eggert, P. Koch, and G. Hüttmann, “In vivo Fourier-domain full-field OCT of the human retina with 1.5 million A-lines/s,” Opt. Lett.35(20), 3432–3434 (2010).
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M. C. Pierce, B. Hyle Park, B. Cense, and J. F. de Boer, “Simultaneous intensity, birefringence, and flow measurements with high-speed fiber-based optical coherence tomography,” Opt. Lett.27(17), 1534–1536 (2002).
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H. Ren, Z. Ding, Y. Zhao, J. Miao, J. S. Nelson, and Z. Chen, “Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin,” Opt. Lett.27(19), 1702–1704 (2002).
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B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, “Invivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography,” Opt. Lett.27(18), 1610–1612 (2002).
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J. F. de Boer, T. E. Milner, M. J. C. van Gemert, and J. S. Nelson, “Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography,” Opt. Lett.22(12), 934–936 (1997).
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Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer, and J. S. Nelson, “Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity,” Opt. Lett.25(2), 114–116 (2000).
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Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, “Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow,” Opt. Lett.25(18), 1358–1360 (2000).
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J. F. de Boer, B. Cense, B. H. Park, M. C. Pierce, G. J. Tearney, and B. E. Bouma, “Improved signal-to-noise ratio in spectral-domain compared with time-domain optical coherence tomography,” Opt. Lett.28(21), 2067–2069 (2003).
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Rev. Sci. Instrum. (1)

T. E. Ustun, N. V. Iftimia, R. D. Ferguson, and D. X. Hammer, “Real-time processing for Fourier domain optical coherence tomography using a field programmable gate array,” Rev. Sci. Instrum.79(11), 114301 (2008).
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Science (1)

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science254(5035), 1178–1181 (1991).
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Tissue Eng. (1)

P. O. Bagnaninchi, Y. Yang, N. Zghoul, N. Maffulli, R. K. Wang, and A. J. Haj, “Chitosan microchannel scaffolds for tendon tissue engineering characterized using optical coherence tomography,” Tissue Eng.13(2), 323–331 (2007).
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Other (2)

NVIDIA, “NVIDIA CUDA Compute Unified Device Architecture Programming Guide Version 4.0,” (2011).

NVIDIA, “NVIDIA CUDA CUFFT Library Version 4.0,” (2011).

Supplementary Material (7)

» Media 1: MOV (250 KB)     
» Media 2: MOV (683 KB)     
» Media 3: MOV (856 KB)     
» Media 4: MOV (630 KB)     
» Media 5: MOV (3870 KB)     
» Media 6: MOV (3787 KB)     
» Media 7: MOV (3717 KB)     

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Figures (10)

Fig. 1
Fig. 1

Scheme of multi-functional SD-OCT system with GPU assisted processing

Fig. 2
Fig. 2

Snap-shot of the GUI of the real-time data acquisition program during imaging of a mouse brain with a thin skull preparation. The control panel, indicating processing status, is shown at top left. The other five views are of the unprocessed spectra of the two cameras (bottom left), an intensity image (top middle), flow image (top right), polarization image (bottom middle) and en face flow image (bottom right). The yellow horizontal line in intensity, flow and polarization images indicate the depth of the en face image.

Fig. 3
Fig. 3

Flowchart of the computation and image display of the hybrid CPU/GPU processing scheme in the program.

Fig. 4
Fig. 4

Time comparison of CPU and GPU computation of intensity image only and multi-functional images at different number of A-lines.

Fig. 5
Fig. 5

(a) Measured round-trip diattenuation of polarizing films with diattenuation of 1 (PF1, red dots) and 0.15 (PF2, blue squares) with set orientation; (b) measured round-trip phase retardation of a single wave plate (WP, red dots) and combined sample with a polarizing film with diattenuation 0.15 atop of same wave plate (PFWP, blue squares)with set orientation; (c) measured optic orientation of single polarizing film with diattenuation of 1 (PF, red dots) and combined sample with a polarizing film atop of wave plate (PFWP, blue square).

Fig. 6
Fig. 6

Intensity, PS-OCT images, and averaged phase retardation along depth for chicken adipose tissue (a, d, g), muscle (b, g, h) and a polarizing film putting on top of the same muscle (c, f, i). After putting polarizing film on the same piece of chicken muscle, PS-OCT can still be extracted correctly as shown in (f). Phase retardation slope (0.907 ± 0.07°/μm) after placing polarizing film (i) is similar to the phase retardation slope (0.8821 ± 0.045°/μm) without putting polarizing film shown in (h). The width and depth of the images were 2mm.

Fig. 7
Fig. 7

Live imaging of a horseshoe crab lateral compound eye, cross-sectional intensity image (0.8mm in width and 2mm in height) is on left and en face image (both width and height are 0.8mm) is on right. (a) 25650512 voxels: en face depth is about 380μmdeep from eye surface (Media 1); (b) 512 × 50512 voxels (Media 2): same en face depth with (a);(c) 102450512 voxels (Media 3): same en face depth with (a);(d) 51250512 voxels, en face depth is 450μm from eye surface (Media 4). The arrows in cross-sectional image of (a) indicate walls of crystal cones, arrows in en face images of (a) and (d) are pointing to hexagonal ommatidia. Arrows in cross-sectional image of (b) show membrane fenestrate at the end of ommatidia.

Fig. 8
Fig. 8

Imaging and video recording of chicken muscle (Media 5), with heated applied to a lateral position corresponding to the top right corner: (a) A representative frame of the video when heat started transmitting from top right corner; (b) A representative frame when heat propagated to surrounding area. In both (a) and (b), top left, the four views are: cross-sectional intensity image (top left, 1.3mm2mm), phase retardation image (bottom left, 1.3mm2mm), en face phase retardation image (top right, 1.3mm1.3mm). Cross-sectional flow image display on the bottom right was deactivated during video recording as there was no live flow in this piece of chicken muscle.

Fig. 9
Fig. 9

(a) Set-up of the microfluidic device: the micro channel with 600 μm diameter was carved on a PDMS sheet and fixed to a glass slide. Top surface of glass slide was close to incident beam. Inlet of micro channel was connected to a syringe through a plastic tube and a needle, the outlet of micro channel was connected to a petri dish containing diluted intralipid through a plastic tube. (b) A representative frame of imaging flow change in the microfluidic device (Media 6): the four views are cross-sectional intensity image (top left, 1.8mm2mm); en face flow image (top right, 1.8mm1.8mm); cross-sectional flow image (bottom right, 1.8mm2mm); display of cross-sectional phase retardation view on the bottom left was deactivated as PDMS is for the purpose of testing intensity and flow in this section. The glass slide was slightly shifted to the conjugate complex positions to portray a more intense image of microfluidic channel in the display. Arrow 1 indicates the top surface of glass slide and arrow 2 points to bottom layer of glass slide which is fixed to PDMS. In flow cross sectional image, we see the ring shape white and dark pattern caused by phase wrapping, and turbulence was seen because of high speed pushing and resistance in the channel.

Fig. 10
Fig. 10

A representative frame of in vivo imaging a mouse brain with thin skull (Media 7): cross-sectional intensity image (top left), cross-sectional flow image (top right), cross-sectional phase retardation image (bottom left) and en face flow image (bottom right). The image sizes are all 2mm by 2mm. The updating rate of the video is 10 frames (512 pixel by 2048 A-line) per second. The red spots in intensity image indicate signal saturation, red line in phase retardation image shows surface line of sample, the yellow lines in all three cross-sectional images indicate the en face depth. The arrow in intensity image point to corpus callosum, arrows in cross-sectional flow image show the spatial cross-section positions of two blood vessels, arrows in en face flow image show four blood vessels lying on the en face depth of the scanning volume.

Tables (1)

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Table 1 Time comparison of CPU and GPU calculation

Equations (11)

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I n ( z m )= H n ( z m ) H n * ( z m ) V n ( z m ) V n * ( z m )
Δ ϕ H n , V n ( z m )= ϕ H n , V n ( z m ) ϕ H n2 , V n2 ( z m )
ω n ( z m )= 1 2T | H n ( z m ) | 2 Δ ϕ H n ( z m )+ | V n ( z m ) | 2 Δ ϕ V n ( z m ) | H n ( z m ) | 2 + | V n ( z m ) | 2
σ n 2 ( z m )= | H n ( z m ) | 2 Δ ϕ 2 H n ( z m )+ | V n ( z m ) | 2 Δ ϕ 2 V n ( z m ) | H n ( z m ) | 2 + | V n ( z m ) | 2
S n ( z m )=[ Q n ( z m ) U n ( z m ) V n ( z m ) ]=[ H n ( z m ) H n * ( z m ) V n ( z m ) V n * ( z m ) H n ( z m ) V n * ( z m )+ H n * ( z m ) V n ( z m ) i( H n ( z m ) V n * ( z m ) H n * ( z m ) V n ( z m )) ]
Α i ( z m )||( S 2i ( s 2i ) S 2i ( z m ))×( S 2i+1 ( s 2i+1 ) S 2i+1 ( z m ))
θ 2i ( z m )= cos 1 ( | ( Α i ( z m )× S 2i ( s 2i ))( Α i ( z m )× S 2i ( z m )) | | ( Α i ( z m )× S 2i ( s 2i )) || Α i ( z m )× S 2i ( z m ) | )
sin θ Α i ( z m ), S 2i ( s 2i ) = | Α i ( z m )× S 2i ( s 2i ) | | Α i ( z m ) || S 2i ( s 2i ) |
W 2i ( z m )= I 2i ( s 2i )sin θ Α i ( z m ), S 2i ( s 2i ) I 2i ( z m )sin θ Α i ( z m ), S 2i ( z m )
W 2i+1 ( z m )= I 2i+1 ( s 2i+1 )sin θ Α i ( z m ), S 2i+1 ( s 2i+1 ) I 2i+1 ( z m )sin θ Α i ( z m ), S 2i+1 ( z m )
η i ( z m )= W 2i ( z m ) θ 2i ( z m )+ W 2i+1 ( z m ) θ 2i+1 ( z m ) W 2i ( z m )+ W 2i+1 ( z m )

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