H. Gao and H.-K. Zhao, “Multilevel bioluminescence tomography based on radiative transfer equation. Part 2: total variation and l1 data fidelity,” Opt. Express 18, 2894–2912 (2010).

[CrossRef]
[PubMed]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

S.-P. Zhu, J. Tian, G.-R. Yan, C.-H. Qin, and J.-C. Feng, “Cone beam micro-CT system for small animal imaging and performance evaluation,” Int. J. Biomed. Imaging 2009, Article ID 960573 (2009). http://www.hindawi.com/journals/ijbi/2009/960573/html.

[CrossRef]
[PubMed]

G.-R. Yan, J. Tian, S.-P. Zhu, Y.-K. Dai, and C.-H. Qin, “Fast cone-beam CT image reconstruction using GPU hardware,” J. X-Ray Sci. Technol. 16, 225–234 (2008).

H.-W. Li, X.-C. Tai, and S. I. Aanonsen, “Reservoir description by using a piecewise-constant level-set method,” J. Comput. Phys. 26, 365–377 (2008).

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

R. Weissleder and M. J. Pittet, “Imaging in the era of molecular oncology,” Nature 452, 580–589 (2008).

[CrossRef]
[PubMed]

J. K. Willmann, N. van Bruggen, L. M. Dinkelborg, and S. S. Gambhir, “Molecular imaging in drug development,” Nat. Rev. Drug Discovery 7, 591–607 (2008).

[CrossRef]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

C. Kuo, O. Coquoz, T. L. Troy, H. Xu, and B. W. Rice, “Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging,” J. Biomed. Opt. 12, 024007 (2007).

[CrossRef]
[PubMed]

L. V. Wang and H. Wu, Biomedical Optics (Wiley-Interscience, (2007).

[PubMed]

A. Losnegård, O. Christiansen, and X.-C. Tai, “Piecewise-constant level-set method for 3D image segmentation,” in Scale Space and Variational Methods in Computer Vision, F.Sgallari, A.Murli, and N.Paragios, eds. (Springer-Verlag, 2007), pp. 687–696.

[CrossRef]

X.-C. Tai, and H.-W. Li, “A piecewise-constant level-set method for elliptic inverse problems,” Appl. Numer. Math. 57, 686–696 (2007).

[CrossRef]

H-J. Zhao, Fe. Gao, Y. Tanikawa, and Y. Yamada, “Time-resolved diffuse optical tomography and its application to in vitro and in vivo imaging,” J. Biomed. Opt. 12, 062107 (2007).

[CrossRef]

O. Christiansen and X.-C. Tai, “Fast implementation of piecewise-constant level-set methods,” in Proceedings of Image Processing Based on Partial Differential Equations, X.-C.Tai, K.-A.Lie, T.F.Chan, and S.Osher, eds. (Springer, 2007), pp. 289–308.

[CrossRef]

G. Wang, H.-O. Shen, W.-X. Cong, S. Zhao, and G.-W. Wei, “Temperature-modulated bioluminescence tomography,” Opt. Express 14, 7852–7871 (2006).

[CrossRef]
[PubMed]

W.-X. Cong and G. Wang, “Boundary integral method for bioluminescence tomography,” J. Biomed. Opt. 11, 020503 (2006).

[CrossRef]
[PubMed]

N. V. Slavine, M. A. Lewis, E. Richer, and P. P. Antich, “Iterative reconstruction method for light emitting sources based on the diffusion equation,” Med. Phys. 33, 61–68 (2006).

[CrossRef]
[PubMed]

M. Schweiger, S. R. Arridge, O. Dorn, A. Zacharopoulos, and V. Kolehmainen, “Reconstructing absorption and diffusion shape profiles in optical tomography by a level-set technique,” Opt. Lett. 31, 471–473 (2006).

[CrossRef]
[PubMed]

J. Lie, M. Lysaker, and X.-C. Tai, “A binary level-set model and some applications to Mumford–Shah image segmentation,” IEEE Trans. Image Process. 15, 1171–1181 (2006).

[CrossRef]
[PubMed]

O. Dorn and D. Lesselier, “Level-set methods for inverse scattering,” Inverse Probl. 22, R67–R131 (2006).

[CrossRef]

J. Lie, M. Lysaker, and X.-C. Tai, “A variant of the level-set method and applications to image segmentation,” Math. Comput. 75, 1155–1174 (2006).

[CrossRef]

W.-X. Cong, D. Kumar, L. V. Wang, and G. Wang, “A Born-type approximation method for bioluminescence tomography,” Med. Phys. 33, 679–686 (2006).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, G. Wang, W.-X. Cong, J. Luo, W. Yang, and H. Li, “A multilevel adaptive finite element algorithm for bioluminescence tomography,” Opt. Express 14, 8211–8223 (2006).

[CrossRef]
[PubMed]

H. Dehghani, S. C. Davis, S. Jiang, B. W. Pogue, K. D. Paulsen, and M. S. Patterson, “Spectrally resolved bioluminescence optical tomography,” Opt. Lett. 31, 365–367 (2006).

[CrossRef]
[PubMed]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

A. H. Hielscher, “Optical tomographic imaging of small animals,” Curr. Opin. Biotechnol. 16, 79–88 (2005).

[CrossRef]
[PubMed]

V. Ntziachristos, J. Ripoll, L. V. Wang, and R. Weisslder, “Looking and listening to light: the evolution of whole body photonic imaging,” Nat. Biotechnol. 23, 313–320 (2005).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

E. T. Chung, T. F. Chan, and X.-C. Tai, “Electrical impedance tomography using level-set representation and total variational regularization,” J. Comput. Phys. 205, 357–372 (2005).

[CrossRef]

H. Zhao, T. C. Doyle, O. Coquoz, F. Kalish, B. W. Rice, and C. H. Contag, “Emission spectra of bioluminescent reporters and interaction with mammalian tissue determine the sensitivity of detection in vivo,” J. Biomed. Opt. 10, 041210 (2005).

[CrossRef]

G. Alexandrakis, F. R. Rannou, and A. F. Chatziioannou, “Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: a computer simulation feasibility study,” Phys. Med. Biol. 50, 4225–4241 (2005).

[CrossRef]
[PubMed]

R. L. Burden and J. D. Faires, Numerical Analysis (Wadsworth, 2004).

X. Gu, Q. Zhang, L. Larcom, and H.-B. Jiang, “three-dimensional bioluminescence tomography with model based reconstruction,” Opt. Express 12, 3996–4000 (2004).

[CrossRef]
[PubMed]

G. Wang, Y. Li, and M. Jiang, “Uniqueness theorems in bioluminescence tomography,” Med. Phys. 31, 2289–2299 (2004).

[CrossRef]
[PubMed]

H. Herschman, “Molecular imaging: looking at problems, seeing solutions,” Science 302, 605–608 (2003).

[CrossRef]
[PubMed]

R. Weissleder and V. Ntziachristos, “Shedding light onto live molecular targets,” Nat. Med. 9, 123–128 (2003).

[CrossRef]
[PubMed]

G. Wang, E. A. Hoffman, G. McLennan, L. V. Wang, M. Suter, and J. F. Meinel, “Development of the first bioluminescence CT scanner,” Radiology 229, 566 (2003).

S. Osher and R. P. Fedkiw, Level Sets Methods and Dynamic Implicit Surfaces (Springer, 2003).

L. A. Vese and T. F. Chan, “A multiphase level-set framevork for image segmentation using the Mumford and Shah model,” Int. J. Comput. Vis. 50, 271–293 (2002).

[CrossRef]

T. F. Chan and L. Vese, “An active contour model without edges,” IEEE Trans. Image Process. 10, 266–277 (2001).

[CrossRef]

L. Zöllei, A. Yezzi, and T. Kapur, “A variational framework for joint segmentation and registration,” in IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (IEEE Computer Society, 2001), pp. 44–51.

O. Dorn, E. Miller, and C. Rappaport, “A shape reconstruction method for electromagnetic tomography using adjoint fields and level sets,” Inverse Probl. 16, 1119–1156 (2000).

[CrossRef]

T. F. Chan and X.-C. Tai, “Augmented Lagrangian and total variation methods for recovering discontinuous coefficients from elliptic equations,” in Proceedings of Computational Science for the 21st Century, M.Bristeau, G.Etgen, W.Fitzgibbon, J.L.Lions, J.Periaux, and M.F.Wheeler, eds. (Wiley, 1997), pp. 597–607.

D. Adalsteinsson and J. A. Sethian, “A fast level-set method for propagating interfaces,” J. Comput. Phys. 118, 269–277 (1995).

[CrossRef]

X-D. Liu, S. Osher, and T. Chan, “Weighted essentially non-oscillatory schemes,” J. Comput. Phys. 115, 200–212 (1994).

[CrossRef]

T. Lu, P. Neittaanmäki, and X.-C. Tai, “A parallel splitting up method and its application to Navier–Stokes equations,” Appl. Math. Lett. 4, 25–29 (1991).

[CrossRef]

C-W. Shu and S. Osher, “Efficient implementation of essentially non-oscillatory shock capturing schemes,” J. Comput. Phys. 83, 439–471 (1988).

[CrossRef]

S. Osher and J. A. Sethian, “Fronts propagating with curvature dependent speed: Algorithms based on Hamilton-Jacobi formulations,” J. Comput. Phys. 79, 12–49 (1988).

[CrossRef]

H.-W. Li, X.-C. Tai, and S. I. Aanonsen, “Reservoir description by using a piecewise-constant level-set method,” J. Comput. Phys. 26, 365–377 (2008).

D. Adalsteinsson and J. A. Sethian, “A fast level-set method for propagating interfaces,” J. Comput. Phys. 118, 269–277 (1995).

[CrossRef]

G. Alexandrakis, F. R. Rannou, and A. F. Chatziioannou, “Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: a computer simulation feasibility study,” Phys. Med. Biol. 50, 4225–4241 (2005).

[CrossRef]
[PubMed]

N. V. Slavine, M. A. Lewis, E. Richer, and P. P. Antich, “Iterative reconstruction method for light emitting sources based on the diffusion equation,” Med. Phys. 33, 61–68 (2006).

[CrossRef]
[PubMed]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

R. L. Burden and J. D. Faires, Numerical Analysis (Wadsworth, 2004).

X-D. Liu, S. Osher, and T. Chan, “Weighted essentially non-oscillatory schemes,” J. Comput. Phys. 115, 200–212 (1994).

[CrossRef]

E. T. Chung, T. F. Chan, and X.-C. Tai, “Electrical impedance tomography using level-set representation and total variational regularization,” J. Comput. Phys. 205, 357–372 (2005).

[CrossRef]

L. A. Vese and T. F. Chan, “A multiphase level-set framevork for image segmentation using the Mumford and Shah model,” Int. J. Comput. Vis. 50, 271–293 (2002).

[CrossRef]

T. F. Chan and L. Vese, “An active contour model without edges,” IEEE Trans. Image Process. 10, 266–277 (2001).

[CrossRef]

T. F. Chan and X.-C. Tai, “Augmented Lagrangian and total variation methods for recovering discontinuous coefficients from elliptic equations,” in Proceedings of Computational Science for the 21st Century, M.Bristeau, G.Etgen, W.Fitzgibbon, J.L.Lions, J.Periaux, and M.F.Wheeler, eds. (Wiley, 1997), pp. 597–607.

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

G. Alexandrakis, F. R. Rannou, and A. F. Chatziioannou, “Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: a computer simulation feasibility study,” Phys. Med. Biol. 50, 4225–4241 (2005).

[CrossRef]
[PubMed]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

O. Christiansen and X.-C. Tai, “Fast implementation of piecewise-constant level-set methods,” in Proceedings of Image Processing Based on Partial Differential Equations, X.-C.Tai, K.-A.Lie, T.F.Chan, and S.Osher, eds. (Springer, 2007), pp. 289–308.

[CrossRef]

A. Losnegård, O. Christiansen, and X.-C. Tai, “Piecewise-constant level-set method for 3D image segmentation,” in Scale Space and Variational Methods in Computer Vision, F.Sgallari, A.Murli, and N.Paragios, eds. (Springer-Verlag, 2007), pp. 687–696.

[CrossRef]

E. T. Chung, T. F. Chan, and X.-C. Tai, “Electrical impedance tomography using level-set representation and total variational regularization,” J. Comput. Phys. 205, 357–372 (2005).

[CrossRef]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

G. Wang, H.-O. Shen, W.-X. Cong, S. Zhao, and G.-W. Wei, “Temperature-modulated bioluminescence tomography,” Opt. Express 14, 7852–7871 (2006).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, G. Wang, W.-X. Cong, J. Luo, W. Yang, and H. Li, “A multilevel adaptive finite element algorithm for bioluminescence tomography,” Opt. Express 14, 8211–8223 (2006).

[CrossRef]
[PubMed]

W.-X. Cong and G. Wang, “Boundary integral method for bioluminescence tomography,” J. Biomed. Opt. 11, 020503 (2006).

[CrossRef]
[PubMed]

W.-X. Cong, D. Kumar, L. V. Wang, and G. Wang, “A Born-type approximation method for bioluminescence tomography,” Med. Phys. 33, 679–686 (2006).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

H. Zhao, T. C. Doyle, O. Coquoz, F. Kalish, B. W. Rice, and C. H. Contag, “Emission spectra of bioluminescent reporters and interaction with mammalian tissue determine the sensitivity of detection in vivo,” J. Biomed. Opt. 10, 041210 (2005).

[CrossRef]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

C. Kuo, O. Coquoz, T. L. Troy, H. Xu, and B. W. Rice, “Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging,” J. Biomed. Opt. 12, 024007 (2007).

[CrossRef]
[PubMed]

H. Zhao, T. C. Doyle, O. Coquoz, F. Kalish, B. W. Rice, and C. H. Contag, “Emission spectra of bioluminescent reporters and interaction with mammalian tissue determine the sensitivity of detection in vivo,” J. Biomed. Opt. 10, 041210 (2005).

[CrossRef]

G.-R. Yan, J. Tian, S.-P. Zhu, Y.-K. Dai, and C.-H. Qin, “Fast cone-beam CT image reconstruction using GPU hardware,” J. X-Ray Sci. Technol. 16, 225–234 (2008).

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

J. K. Willmann, N. van Bruggen, L. M. Dinkelborg, and S. S. Gambhir, “Molecular imaging in drug development,” Nat. Rev. Drug Discovery 7, 591–607 (2008).

[CrossRef]

M. Schweiger, S. R. Arridge, O. Dorn, A. Zacharopoulos, and V. Kolehmainen, “Reconstructing absorption and diffusion shape profiles in optical tomography by a level-set technique,” Opt. Lett. 31, 471–473 (2006).

[CrossRef]
[PubMed]

O. Dorn and D. Lesselier, “Level-set methods for inverse scattering,” Inverse Probl. 22, R67–R131 (2006).

[CrossRef]

O. Dorn, E. Miller, and C. Rappaport, “A shape reconstruction method for electromagnetic tomography using adjoint fields and level sets,” Inverse Probl. 16, 1119–1156 (2000).

[CrossRef]

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

H. Zhao, T. C. Doyle, O. Coquoz, F. Kalish, B. W. Rice, and C. H. Contag, “Emission spectra of bioluminescent reporters and interaction with mammalian tissue determine the sensitivity of detection in vivo,” J. Biomed. Opt. 10, 041210 (2005).

[CrossRef]

R. L. Burden and J. D. Faires, Numerical Analysis (Wadsworth, 2004).

S. Osher and R. P. Fedkiw, Level Sets Methods and Dynamic Implicit Surfaces (Springer, 2003).

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

S.-P. Zhu, J. Tian, G.-R. Yan, C.-H. Qin, and J.-C. Feng, “Cone beam micro-CT system for small animal imaging and performance evaluation,” Int. J. Biomed. Imaging 2009, Article ID 960573 (2009). http://www.hindawi.com/journals/ijbi/2009/960573/html.

[CrossRef]
[PubMed]

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

J. K. Willmann, N. van Bruggen, L. M. Dinkelborg, and S. S. Gambhir, “Molecular imaging in drug development,” Nat. Rev. Drug Discovery 7, 591–607 (2008).

[CrossRef]

H-J. Zhao, Fe. Gao, Y. Tanikawa, and Y. Yamada, “Time-resolved diffuse optical tomography and its application to in vitro and in vivo imaging,” J. Biomed. Opt. 12, 062107 (2007).

[CrossRef]

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

H. Herschman, “Molecular imaging: looking at problems, seeing solutions,” Science 302, 605–608 (2003).

[CrossRef]
[PubMed]

A. H. Hielscher, “Optical tomographic imaging of small animals,” Curr. Opin. Biotechnol. 16, 79–88 (2005).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

G. Wang, E. A. Hoffman, G. McLennan, L. V. Wang, M. Suter, and J. F. Meinel, “Development of the first bioluminescence CT scanner,” Radiology 229, 566 (2003).

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

G. Wang, Y. Li, and M. Jiang, “Uniqueness theorems in bioluminescence tomography,” Med. Phys. 31, 2289–2299 (2004).

[CrossRef]
[PubMed]

H. Zhao, T. C. Doyle, O. Coquoz, F. Kalish, B. W. Rice, and C. H. Contag, “Emission spectra of bioluminescent reporters and interaction with mammalian tissue determine the sensitivity of detection in vivo,” J. Biomed. Opt. 10, 041210 (2005).

[CrossRef]

L. Zöllei, A. Yezzi, and T. Kapur, “A variational framework for joint segmentation and registration,” in IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (IEEE Computer Society, 2001), pp. 44–51.

W.-X. Cong, D. Kumar, L. V. Wang, and G. Wang, “A Born-type approximation method for bioluminescence tomography,” Med. Phys. 33, 679–686 (2006).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

C. Kuo, O. Coquoz, T. L. Troy, H. Xu, and B. W. Rice, “Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging,” J. Biomed. Opt. 12, 024007 (2007).

[CrossRef]
[PubMed]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

O. Dorn and D. Lesselier, “Level-set methods for inverse scattering,” Inverse Probl. 22, R67–R131 (2006).

[CrossRef]

N. V. Slavine, M. A. Lewis, E. Richer, and P. P. Antich, “Iterative reconstruction method for light emitting sources based on the diffusion equation,” Med. Phys. 33, 61–68 (2006).

[CrossRef]
[PubMed]

H.-W. Li, X.-C. Tai, and S. I. Aanonsen, “Reservoir description by using a piecewise-constant level-set method,” J. Comput. Phys. 26, 365–377 (2008).

X.-C. Tai, and H.-W. Li, “A piecewise-constant level-set method for elliptic inverse problems,” Appl. Numer. Math. 57, 686–696 (2007).

[CrossRef]

G. Wang, Y. Li, and M. Jiang, “Uniqueness theorems in bioluminescence tomography,” Med. Phys. 31, 2289–2299 (2004).

[CrossRef]
[PubMed]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

J. Lie, M. Lysaker, and X.-C. Tai, “A binary level-set model and some applications to Mumford–Shah image segmentation,” IEEE Trans. Image Process. 15, 1171–1181 (2006).

[CrossRef]
[PubMed]

J. Lie, M. Lysaker, and X.-C. Tai, “A variant of the level-set method and applications to image segmentation,” Math. Comput. 75, 1155–1174 (2006).

[CrossRef]

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

X-D. Liu, S. Osher, and T. Chan, “Weighted essentially non-oscillatory schemes,” J. Comput. Phys. 115, 200–212 (1994).

[CrossRef]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

A. Losnegård, O. Christiansen, and X.-C. Tai, “Piecewise-constant level-set method for 3D image segmentation,” in Scale Space and Variational Methods in Computer Vision, F.Sgallari, A.Murli, and N.Paragios, eds. (Springer-Verlag, 2007), pp. 687–696.

[CrossRef]

T. Lu, P. Neittaanmäki, and X.-C. Tai, “A parallel splitting up method and its application to Navier–Stokes equations,” Appl. Math. Lett. 4, 25–29 (1991).

[CrossRef]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

Y.-J. Lv, J. Tian, G. Wang, W.-X. Cong, J. Luo, W. Yang, and H. Li, “A multilevel adaptive finite element algorithm for bioluminescence tomography,” Opt. Express 14, 8211–8223 (2006).

[CrossRef]
[PubMed]

J. Lie, M. Lysaker, and X.-C. Tai, “A binary level-set model and some applications to Mumford–Shah image segmentation,” IEEE Trans. Image Process. 15, 1171–1181 (2006).

[CrossRef]
[PubMed]

J. Lie, M. Lysaker, and X.-C. Tai, “A variant of the level-set method and applications to image segmentation,” Math. Comput. 75, 1155–1174 (2006).

[CrossRef]

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

G. Wang, E. A. Hoffman, G. McLennan, L. V. Wang, M. Suter, and J. F. Meinel, “Development of the first bioluminescence CT scanner,” Radiology 229, 566 (2003).

G. Wang, E. A. Hoffman, G. McLennan, L. V. Wang, M. Suter, and J. F. Meinel, “Development of the first bioluminescence CT scanner,” Radiology 229, 566 (2003).

O. Dorn, E. Miller, and C. Rappaport, “A shape reconstruction method for electromagnetic tomography using adjoint fields and level sets,” Inverse Probl. 16, 1119–1156 (2000).

[CrossRef]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

T. Lu, P. Neittaanmäki, and X.-C. Tai, “A parallel splitting up method and its application to Navier–Stokes equations,” Appl. Math. Lett. 4, 25–29 (1991).

[CrossRef]

V. Ntziachristos, J. Ripoll, L. V. Wang, and R. Weisslder, “Looking and listening to light: the evolution of whole body photonic imaging,” Nat. Biotechnol. 23, 313–320 (2005).

[CrossRef]
[PubMed]

R. Weissleder and V. Ntziachristos, “Shedding light onto live molecular targets,” Nat. Med. 9, 123–128 (2003).

[CrossRef]
[PubMed]

S. Osher and R. P. Fedkiw, Level Sets Methods and Dynamic Implicit Surfaces (Springer, 2003).

X-D. Liu, S. Osher, and T. Chan, “Weighted essentially non-oscillatory schemes,” J. Comput. Phys. 115, 200–212 (1994).

[CrossRef]

C-W. Shu and S. Osher, “Efficient implementation of essentially non-oscillatory shock capturing schemes,” J. Comput. Phys. 83, 439–471 (1988).

[CrossRef]

S. Osher and J. A. Sethian, “Fronts propagating with curvature dependent speed: Algorithms based on Hamilton-Jacobi formulations,” J. Comput. Phys. 79, 12–49 (1988).

[CrossRef]

R. Weissleder and M. J. Pittet, “Imaging in the era of molecular oncology,” Nature 452, 580–589 (2008).

[CrossRef]
[PubMed]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

S.-P. Zhu, J. Tian, G.-R. Yan, C.-H. Qin, and J.-C. Feng, “Cone beam micro-CT system for small animal imaging and performance evaluation,” Int. J. Biomed. Imaging 2009, Article ID 960573 (2009). http://www.hindawi.com/journals/ijbi/2009/960573/html.

[CrossRef]
[PubMed]

G.-R. Yan, J. Tian, S.-P. Zhu, Y.-K. Dai, and C.-H. Qin, “Fast cone-beam CT image reconstruction using GPU hardware,” J. X-Ray Sci. Technol. 16, 225–234 (2008).

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

G. Alexandrakis, F. R. Rannou, and A. F. Chatziioannou, “Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: a computer simulation feasibility study,” Phys. Med. Biol. 50, 4225–4241 (2005).

[CrossRef]
[PubMed]

O. Dorn, E. Miller, and C. Rappaport, “A shape reconstruction method for electromagnetic tomography using adjoint fields and level sets,” Inverse Probl. 16, 1119–1156 (2000).

[CrossRef]

C. Kuo, O. Coquoz, T. L. Troy, H. Xu, and B. W. Rice, “Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging,” J. Biomed. Opt. 12, 024007 (2007).

[CrossRef]
[PubMed]

H. Zhao, T. C. Doyle, O. Coquoz, F. Kalish, B. W. Rice, and C. H. Contag, “Emission spectra of bioluminescent reporters and interaction with mammalian tissue determine the sensitivity of detection in vivo,” J. Biomed. Opt. 10, 041210 (2005).

[CrossRef]

N. V. Slavine, M. A. Lewis, E. Richer, and P. P. Antich, “Iterative reconstruction method for light emitting sources based on the diffusion equation,” Med. Phys. 33, 61–68 (2006).

[CrossRef]
[PubMed]

V. Ntziachristos, J. Ripoll, L. V. Wang, and R. Weisslder, “Looking and listening to light: the evolution of whole body photonic imaging,” Nat. Biotechnol. 23, 313–320 (2005).

[CrossRef]
[PubMed]

D. Adalsteinsson and J. A. Sethian, “A fast level-set method for propagating interfaces,” J. Comput. Phys. 118, 269–277 (1995).

[CrossRef]

S. Osher and J. A. Sethian, “Fronts propagating with curvature dependent speed: Algorithms based on Hamilton-Jacobi formulations,” J. Comput. Phys. 79, 12–49 (1988).

[CrossRef]

C-W. Shu and S. Osher, “Efficient implementation of essentially non-oscillatory shock capturing schemes,” J. Comput. Phys. 83, 439–471 (1988).

[CrossRef]

N. V. Slavine, M. A. Lewis, E. Richer, and P. P. Antich, “Iterative reconstruction method for light emitting sources based on the diffusion equation,” Med. Phys. 33, 61–68 (2006).

[CrossRef]
[PubMed]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

G. Wang, E. A. Hoffman, G. McLennan, L. V. Wang, M. Suter, and J. F. Meinel, “Development of the first bioluminescence CT scanner,” Radiology 229, 566 (2003).

H.-W. Li, X.-C. Tai, and S. I. Aanonsen, “Reservoir description by using a piecewise-constant level-set method,” J. Comput. Phys. 26, 365–377 (2008).

A. Losnegård, O. Christiansen, and X.-C. Tai, “Piecewise-constant level-set method for 3D image segmentation,” in Scale Space and Variational Methods in Computer Vision, F.Sgallari, A.Murli, and N.Paragios, eds. (Springer-Verlag, 2007), pp. 687–696.

[CrossRef]

X.-C. Tai, and H.-W. Li, “A piecewise-constant level-set method for elliptic inverse problems,” Appl. Numer. Math. 57, 686–696 (2007).

[CrossRef]

O. Christiansen and X.-C. Tai, “Fast implementation of piecewise-constant level-set methods,” in Proceedings of Image Processing Based on Partial Differential Equations, X.-C.Tai, K.-A.Lie, T.F.Chan, and S.Osher, eds. (Springer, 2007), pp. 289–308.

[CrossRef]

J. Lie, M. Lysaker, and X.-C. Tai, “A variant of the level-set method and applications to image segmentation,” Math. Comput. 75, 1155–1174 (2006).

[CrossRef]

J. Lie, M. Lysaker, and X.-C. Tai, “A binary level-set model and some applications to Mumford–Shah image segmentation,” IEEE Trans. Image Process. 15, 1171–1181 (2006).

[CrossRef]
[PubMed]

E. T. Chung, T. F. Chan, and X.-C. Tai, “Electrical impedance tomography using level-set representation and total variational regularization,” J. Comput. Phys. 205, 357–372 (2005).

[CrossRef]

T. F. Chan and X.-C. Tai, “Augmented Lagrangian and total variation methods for recovering discontinuous coefficients from elliptic equations,” in Proceedings of Computational Science for the 21st Century, M.Bristeau, G.Etgen, W.Fitzgibbon, J.L.Lions, J.Periaux, and M.F.Wheeler, eds. (Wiley, 1997), pp. 597–607.

T. Lu, P. Neittaanmäki, and X.-C. Tai, “A parallel splitting up method and its application to Navier–Stokes equations,” Appl. Math. Lett. 4, 25–29 (1991).

[CrossRef]

H-J. Zhao, Fe. Gao, Y. Tanikawa, and Y. Yamada, “Time-resolved diffuse optical tomography and its application to in vitro and in vivo imaging,” J. Biomed. Opt. 12, 062107 (2007).

[CrossRef]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

S.-P. Zhu, J. Tian, G.-R. Yan, C.-H. Qin, and J.-C. Feng, “Cone beam micro-CT system for small animal imaging and performance evaluation,” Int. J. Biomed. Imaging 2009, Article ID 960573 (2009). http://www.hindawi.com/journals/ijbi/2009/960573/html.

[CrossRef]
[PubMed]

G.-R. Yan, J. Tian, S.-P. Zhu, Y.-K. Dai, and C.-H. Qin, “Fast cone-beam CT image reconstruction using GPU hardware,” J. X-Ray Sci. Technol. 16, 225–234 (2008).

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

Y.-J. Lv, J. Tian, G. Wang, W.-X. Cong, J. Luo, W. Yang, and H. Li, “A multilevel adaptive finite element algorithm for bioluminescence tomography,” Opt. Express 14, 8211–8223 (2006).

[CrossRef]
[PubMed]

C. Kuo, O. Coquoz, T. L. Troy, H. Xu, and B. W. Rice, “Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging,” J. Biomed. Opt. 12, 024007 (2007).

[CrossRef]
[PubMed]

J. K. Willmann, N. van Bruggen, L. M. Dinkelborg, and S. S. Gambhir, “Molecular imaging in drug development,” Nat. Rev. Drug Discovery 7, 591–607 (2008).

[CrossRef]

T. F. Chan and L. Vese, “An active contour model without edges,” IEEE Trans. Image Process. 10, 266–277 (2001).

[CrossRef]

L. A. Vese and T. F. Chan, “A multiphase level-set framevork for image segmentation using the Mumford and Shah model,” Int. J. Comput. Vis. 50, 271–293 (2002).

[CrossRef]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

G. Wang, H.-O. Shen, W.-X. Cong, S. Zhao, and G.-W. Wei, “Temperature-modulated bioluminescence tomography,” Opt. Express 14, 7852–7871 (2006).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, G. Wang, W.-X. Cong, J. Luo, W. Yang, and H. Li, “A multilevel adaptive finite element algorithm for bioluminescence tomography,” Opt. Express 14, 8211–8223 (2006).

[CrossRef]
[PubMed]

W.-X. Cong, D. Kumar, L. V. Wang, and G. Wang, “A Born-type approximation method for bioluminescence tomography,” Med. Phys. 33, 679–686 (2006).

[CrossRef]
[PubMed]

W.-X. Cong and G. Wang, “Boundary integral method for bioluminescence tomography,” J. Biomed. Opt. 11, 020503 (2006).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

G. Wang, Y. Li, and M. Jiang, “Uniqueness theorems in bioluminescence tomography,” Med. Phys. 31, 2289–2299 (2004).

[CrossRef]
[PubMed]

G. Wang, E. A. Hoffman, G. McLennan, L. V. Wang, M. Suter, and J. F. Meinel, “Development of the first bioluminescence CT scanner,” Radiology 229, 566 (2003).

L. V. Wang and H. Wu, Biomedical Optics (Wiley-Interscience, (2007).

[PubMed]

W.-X. Cong, D. Kumar, L. V. Wang, and G. Wang, “A Born-type approximation method for bioluminescence tomography,” Med. Phys. 33, 679–686 (2006).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

V. Ntziachristos, J. Ripoll, L. V. Wang, and R. Weisslder, “Looking and listening to light: the evolution of whole body photonic imaging,” Nat. Biotechnol. 23, 313–320 (2005).

[CrossRef]
[PubMed]

G. Wang, E. A. Hoffman, G. McLennan, L. V. Wang, M. Suter, and J. F. Meinel, “Development of the first bioluminescence CT scanner,” Radiology 229, 566 (2003).

V. Ntziachristos, J. Ripoll, L. V. Wang, and R. Weisslder, “Looking and listening to light: the evolution of whole body photonic imaging,” Nat. Biotechnol. 23, 313–320 (2005).

[CrossRef]
[PubMed]

R. Weissleder and M. J. Pittet, “Imaging in the era of molecular oncology,” Nature 452, 580–589 (2008).

[CrossRef]
[PubMed]

R. Weissleder and V. Ntziachristos, “Shedding light onto live molecular targets,” Nat. Med. 9, 123–128 (2003).

[CrossRef]
[PubMed]

J. K. Willmann, N. van Bruggen, L. M. Dinkelborg, and S. S. Gambhir, “Molecular imaging in drug development,” Nat. Rev. Drug Discovery 7, 591–607 (2008).

[CrossRef]

L. V. Wang and H. Wu, Biomedical Optics (Wiley-Interscience, (2007).

[PubMed]

C. Kuo, O. Coquoz, T. L. Troy, H. Xu, and B. W. Rice, “Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging,” J. Biomed. Opt. 12, 024007 (2007).

[CrossRef]
[PubMed]

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

H-J. Zhao, Fe. Gao, Y. Tanikawa, and Y. Yamada, “Time-resolved diffuse optical tomography and its application to in vitro and in vivo imaging,” J. Biomed. Opt. 12, 062107 (2007).

[CrossRef]

S.-P. Zhu, J. Tian, G.-R. Yan, C.-H. Qin, and J.-C. Feng, “Cone beam micro-CT system for small animal imaging and performance evaluation,” Int. J. Biomed. Imaging 2009, Article ID 960573 (2009). http://www.hindawi.com/journals/ijbi/2009/960573/html.

[CrossRef]
[PubMed]

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

G.-R. Yan, J. Tian, S.-P. Zhu, Y.-K. Dai, and C.-H. Qin, “Fast cone-beam CT image reconstruction using GPU hardware,” J. X-Ray Sci. Technol. 16, 225–234 (2008).

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

Y.-J. Lv, J. Tian, G. Wang, W.-X. Cong, J. Luo, W. Yang, and H. Li, “A multilevel adaptive finite element algorithm for bioluminescence tomography,” Opt. Express 14, 8211–8223 (2006).

[CrossRef]
[PubMed]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

L. Zöllei, A. Yezzi, and T. Kapur, “A variational framework for joint segmentation and registration,” in IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (IEEE Computer Society, 2001), pp. 44–51.

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

H. Zhao, T. C. Doyle, O. Coquoz, F. Kalish, B. W. Rice, and C. H. Contag, “Emission spectra of bioluminescent reporters and interaction with mammalian tissue determine the sensitivity of detection in vivo,” J. Biomed. Opt. 10, 041210 (2005).

[CrossRef]

H-J. Zhao, Fe. Gao, Y. Tanikawa, and Y. Yamada, “Time-resolved diffuse optical tomography and its application to in vitro and in vivo imaging,” J. Biomed. Opt. 12, 062107 (2007).

[CrossRef]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

S.-P. Zhu, J. Tian, G.-R. Yan, C.-H. Qin, and J.-C. Feng, “Cone beam micro-CT system for small animal imaging and performance evaluation,” Int. J. Biomed. Imaging 2009, Article ID 960573 (2009). http://www.hindawi.com/journals/ijbi/2009/960573/html.

[CrossRef]
[PubMed]

G.-R. Yan, J. Tian, S.-P. Zhu, Y.-K. Dai, and C.-H. Qin, “Fast cone-beam CT image reconstruction using GPU hardware,” J. X-Ray Sci. Technol. 16, 225–234 (2008).

L. Zöllei, A. Yezzi, and T. Kapur, “A variational framework for joint segmentation and registration,” in IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (IEEE Computer Society, 2001), pp. 44–51.

T. Lu, P. Neittaanmäki, and X.-C. Tai, “A parallel splitting up method and its application to Navier–Stokes equations,” Appl. Math. Lett. 4, 25–29 (1991).

[CrossRef]

X.-C. Tai, and H.-W. Li, “A piecewise-constant level-set method for elliptic inverse problems,” Appl. Numer. Math. 57, 686–696 (2007).

[CrossRef]

A. H. Hielscher, “Optical tomographic imaging of small animals,” Curr. Opin. Biotechnol. 16, 79–88 (2005).

[CrossRef]
[PubMed]

J. Tian, J. Bai, X.-P. Yan, S.-L. Bao, Y.-H. Li, W. Liang, and X. Yang, “Multimodality molecular imaging,” IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).

[CrossRef]
[PubMed]

T. F. Chan and L. Vese, “An active contour model without edges,” IEEE Trans. Image Process. 10, 266–277 (2001).

[CrossRef]

J. Lie, M. Lysaker, and X.-C. Tai, “A binary level-set model and some applications to Mumford–Shah image segmentation,” IEEE Trans. Image Process. 15, 1171–1181 (2006).

[CrossRef]
[PubMed]

S.-P. Zhu, J. Tian, G.-R. Yan, C.-H. Qin, and J.-C. Feng, “Cone beam micro-CT system for small animal imaging and performance evaluation,” Int. J. Biomed. Imaging 2009, Article ID 960573 (2009). http://www.hindawi.com/journals/ijbi/2009/960573/html.

[CrossRef]
[PubMed]

L. A. Vese and T. F. Chan, “A multiphase level-set framevork for image segmentation using the Mumford and Shah model,” Int. J. Comput. Vis. 50, 271–293 (2002).

[CrossRef]

O. Dorn and D. Lesselier, “Level-set methods for inverse scattering,” Inverse Probl. 22, R67–R131 (2006).

[CrossRef]

O. Dorn, E. Miller, and C. Rappaport, “A shape reconstruction method for electromagnetic tomography using adjoint fields and level sets,” Inverse Probl. 16, 1119–1156 (2000).

[CrossRef]

W.-X. Cong and G. Wang, “Boundary integral method for bioluminescence tomography,” J. Biomed. Opt. 11, 020503 (2006).

[CrossRef]
[PubMed]

C. Kuo, O. Coquoz, T. L. Troy, H. Xu, and B. W. Rice, “Three-dimensional reconstruction of in vivo bioluminescent sources based on multispectral imaging,” J. Biomed. Opt. 12, 024007 (2007).

[CrossRef]
[PubMed]

H-J. Zhao, Fe. Gao, Y. Tanikawa, and Y. Yamada, “Time-resolved diffuse optical tomography and its application to in vitro and in vivo imaging,” J. Biomed. Opt. 12, 062107 (2007).

[CrossRef]

H. Zhao, T. C. Doyle, O. Coquoz, F. Kalish, B. W. Rice, and C. H. Contag, “Emission spectra of bioluminescent reporters and interaction with mammalian tissue determine the sensitivity of detection in vivo,” J. Biomed. Opt. 10, 041210 (2005).

[CrossRef]

H.-W. Li, X.-C. Tai, and S. I. Aanonsen, “Reservoir description by using a piecewise-constant level-set method,” J. Comput. Phys. 26, 365–377 (2008).

S. Osher and J. A. Sethian, “Fronts propagating with curvature dependent speed: Algorithms based on Hamilton-Jacobi formulations,” J. Comput. Phys. 79, 12–49 (1988).

[CrossRef]

E. T. Chung, T. F. Chan, and X.-C. Tai, “Electrical impedance tomography using level-set representation and total variational regularization,” J. Comput. Phys. 205, 357–372 (2005).

[CrossRef]

D. Adalsteinsson and J. A. Sethian, “A fast level-set method for propagating interfaces,” J. Comput. Phys. 118, 269–277 (1995).

[CrossRef]

C-W. Shu and S. Osher, “Efficient implementation of essentially non-oscillatory shock capturing schemes,” J. Comput. Phys. 83, 439–471 (1988).

[CrossRef]

X-D. Liu, S. Osher, and T. Chan, “Weighted essentially non-oscillatory schemes,” J. Comput. Phys. 115, 200–212 (1994).

[CrossRef]

G.-R. Yan, J. Tian, S.-P. Zhu, Y.-K. Dai, and C.-H. Qin, “Fast cone-beam CT image reconstruction using GPU hardware,” J. X-Ray Sci. Technol. 16, 225–234 (2008).

J. Lie, M. Lysaker, and X.-C. Tai, “A variant of the level-set method and applications to image segmentation,” Math. Comput. 75, 1155–1174 (2006).

[CrossRef]

N. V. Slavine, M. A. Lewis, E. Richer, and P. P. Antich, “Iterative reconstruction method for light emitting sources based on the diffusion equation,” Med. Phys. 33, 61–68 (2006).

[CrossRef]
[PubMed]

G. Wang, Y. Li, and M. Jiang, “Uniqueness theorems in bioluminescence tomography,” Med. Phys. 31, 2289–2299 (2004).

[CrossRef]
[PubMed]

W.-X. Cong, D. Kumar, L. V. Wang, and G. Wang, “A Born-type approximation method for bioluminescence tomography,” Med. Phys. 33, 679–686 (2006).

[CrossRef]
[PubMed]

V. Ntziachristos, J. Ripoll, L. V. Wang, and R. Weisslder, “Looking and listening to light: the evolution of whole body photonic imaging,” Nat. Biotechnol. 23, 313–320 (2005).

[CrossRef]
[PubMed]

R. Weissleder and V. Ntziachristos, “Shedding light onto live molecular targets,” Nat. Med. 9, 123–128 (2003).

[CrossRef]
[PubMed]

J. K. Willmann, N. van Bruggen, L. M. Dinkelborg, and S. S. Gambhir, “Molecular imaging in drug development,” Nat. Rev. Drug Discovery 7, 591–607 (2008).

[CrossRef]

R. Weissleder and M. J. Pittet, “Imaging in the era of molecular oncology,” Nature 452, 580–589 (2008).

[CrossRef]
[PubMed]

X. Gu, Q. Zhang, L. Larcom, and H.-B. Jiang, “three-dimensional bioluminescence tomography with model based reconstruction,” Opt. Express 12, 3996–4000 (2004).

[CrossRef]
[PubMed]

W.-X. Cong, G. Wang, D. Kumar, Y. Liu, M. Jiang, L. V. Wang, E. Hoffman, G. McLennan, P. McCray, J. Zabner, and A. Cong, “Practical reconstruction method for bioluminescence tomography,” Opt. Express 13, 6756–6771 (2005).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, G. Wang, W.-X. Cong, J. Luo, W. Yang, and H. Li, “A multilevel adaptive finite element algorithm for bioluminescence tomography,” Opt. Express 14, 8211–8223 (2006).

[CrossRef]
[PubMed]

G. Wang, H.-O. Shen, W.-X. Cong, S. Zhao, and G.-W. Wei, “Temperature-modulated bioluminescence tomography,” Opt. Express 14, 7852–7871 (2006).

[CrossRef]
[PubMed]

H. Gao and H.-K. Zhao, “Multilevel bioluminescence tomography based on radiative transfer equation. Part 2: total variation and l1 data fidelity,” Opt. Express 18, 2894–2912 (2010).

[CrossRef]
[PubMed]

K. Liu, J. Tian, X. Yang, Y.-J. Lu, C.-H. Qin, S.-P. Zhu, and X. Zhang, “A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations,” Opt. Express 18, 3732–3745 (2010).

[CrossRef]
[PubMed]

J.-C. Feng, K.-B. Jia, C.-H. Qin, G.-R. Yan, S.-P. Zhu, X. Zhang, J.-T. Liu, and J. Tian, “Three-dimensional bioluminescence tomography based on Bayesian approach,” Opt. Express 17, 16834–16848 (2009).

[CrossRef]
[PubMed]

C.-H. Qin, J. Tian, X. Yang, K. Liu, G.-R. Yan, J.-C. Feng, Y.-J. Lv, and M. Xu, “Galerkin-based meshless methods for photon transport in the biological tissue,” Opt. Express 16, 20317–20333 (2008).

[CrossRef]
[PubMed]

M. Schweiger, S. R. Arridge, O. Dorn, A. Zacharopoulos, and V. Kolehmainen, “Reconstructing absorption and diffusion shape profiles in optical tomography by a level-set technique,” Opt. Lett. 31, 471–473 (2006).

[CrossRef]
[PubMed]

H. Dehghani, S. C. Davis, S. Jiang, B. W. Pogue, K. D. Paulsen, and M. S. Patterson, “Spectrally resolved bioluminescence optical tomography,” Opt. Lett. 31, 365–367 (2006).

[CrossRef]
[PubMed]

A. J. Chaudhari, F. Darvas, J. R. Bading, R. A. Moats, P. S. Conti, D. J. Smith, S. R. Cherry, and R. M. Leahy, “Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging,” Phys. Med. Biol. 50, 5421–5441 (2005).

[CrossRef]
[PubMed]

Y.-J. Lv, J. Tian, W.-X. Cong, G. Wang, W. Yang, C.-H. Qin, and M. Xu, “Spectrally resolved bioluminescence tomography with adaptive finite element: methodology and simulation,” Phys. Med. Biol. 52, 1–16 (2007).

[CrossRef]

Y.-J. Lu, A. Douraghy, H. B. Machado, D. Stout, J. Tian, H. Herschman, and A. F. Chatziioannou, “Spectrally-resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation,” Phys. Med. Biol. 59, 6477–6493 (2009).

[CrossRef]

G. Alexandrakis, F. R. Rannou, and A. F. Chatziioannou, “Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: a computer simulation feasibility study,” Phys. Med. Biol. 50, 4225–4241 (2005).

[CrossRef]
[PubMed]

G. Wang, E. A. Hoffman, G. McLennan, L. V. Wang, M. Suter, and J. F. Meinel, “Development of the first bioluminescence CT scanner,” Radiology 229, 566 (2003).

H. Herschman, “Molecular imaging: looking at problems, seeing solutions,” Science 302, 605–608 (2003).

[CrossRef]
[PubMed]

L. Zöllei, A. Yezzi, and T. Kapur, “A variational framework for joint segmentation and registration,” in IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (IEEE Computer Society, 2001), pp. 44–51.

A. Losnegård, O. Christiansen, and X.-C. Tai, “Piecewise-constant level-set method for 3D image segmentation,” in Scale Space and Variational Methods in Computer Vision, F.Sgallari, A.Murli, and N.Paragios, eds. (Springer-Verlag, 2007), pp. 687–696.

[CrossRef]

S. Osher and R. P. Fedkiw, Level Sets Methods and Dynamic Implicit Surfaces (Springer, 2003).

O. Christiansen and X.-C. Tai, “Fast implementation of piecewise-constant level-set methods,” in Proceedings of Image Processing Based on Partial Differential Equations, X.-C.Tai, K.-A.Lie, T.F.Chan, and S.Osher, eds. (Springer, 2007), pp. 289–308.

[CrossRef]

R. L. Burden and J. D. Faires, Numerical Analysis (Wadsworth, 2004).

T. F. Chan and X.-C. Tai, “Augmented Lagrangian and total variation methods for recovering discontinuous coefficients from elliptic equations,” in Proceedings of Computational Science for the 21st Century, M.Bristeau, G.Etgen, W.Fitzgibbon, J.L.Lions, J.Periaux, and M.F.Wheeler, eds. (Wiley, 1997), pp. 597–607.

L. V. Wang and H. Wu, Biomedical Optics (Wiley-Interscience, (2007).

[PubMed]