Abstract

Biophotonics can be defined as the interplay of light and biological matter. The percolation of new optical technology into the realm of biology has literally shed new light into the inner workings of biological systems. This has revealed new applications for optics in biology. In a parallel trend, biomolecules have also been investigated for their optical applications. Materials are playing a central role in the development of biophotonics. New materials, fabrication methods, and structures are enabling new biosensors, contrast agents, imaging strategies, and assay methods. Similarly, biologic materials themselves can be used in photonic devices. In this context, two open-access, rapid-publication journals from The Optical Society of America, Optical Materials Express and Biomedical Optics Express, will publish a joint feature issue covering advances in biophotonics materials.

© 2016 Optical Society of America

Full Article  |  PDF Article

Corrections

4 May 2016: A correction was made to the title.

11 May 2016: A correction was made to an author name.

References

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  21. T. Johann, K. Schmidt, P. Prabhakaran, R. Zentel, and K.-S. Lee, “Two-photon absorption dye based on 2,5-bis(phenylacrylonitrile)-thiophene with aggregration enhanced fluorescence,” Opt. Mater. Express 6(4), 1296–1305 (2016).
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    [Crossref]
  25. C.-B. Yu, Y. Wu, X.-L. Liu, B.-C. Yao, F. Fu, Y. Gong, Y.-J. Rao, and Y.-F. Chen, “Graphene oxide deposited microfiber knot resonator for gas sensing,” Opt. Mater. Express 6(3), 727–733 (2016).
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  26. G. J. Lee, E. H. Choi, W. K. Ham, C. K. Hwangbo, M. J. Cho, and D. H. Choi, “Circular dichroism, surface-enhanced Raman scattering, and spectroscopic ellipsometry studies of chiral polyfluorene-phenylene films,” Opt. Mater. Express 6(3), 767–781 (2016).
    [Crossref]
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    [Crossref]

2016 (21)

J. Mac, V. Nuñez, J. Burns, Y. Guerrero, V. Vullev, and B. Anvari, “Erythrocyte-derived nano-probes functionalized with antibodies for targeted near infrared fluorescence imaging of cancer cells,” Biomed. Opt. Express 7(4), 1311–1322 (2016).
[Crossref]

L. Burgess, J. Chen, N. E. Wolter, B. Wilson, and G. Zheng, “Topical MMP beacon enabled fluorescence-guided resection of oral carcinoma,” Biomed. Opt. Express 7(3), 1089–1099 (2016).
[Crossref]

Q. Zhan, B. Wang, X. Wen, and S. He, “Controlling the excitation of upconverting luminescence for biomedical theranostics: neodymium sensitizing,” Opt. Mater. Express 6(4), 1011–1023 (2016).
[Crossref]

K. Jeong, Y. Kim, C. S. Kang, H.-J. Cho, Y.-D. Lee, I. C. Kwon, and S. Kim, “Nanoprobes for optical bioimaging,” Opt. Mater. Express 6(4), 1262–1279 (2016).
[Crossref]

S. Piant, F. Bolze, and A. Specht, “Two-photon uncaging, from neuroscience to materials,” Opt. Mater. Express 6(5), 1679–1691 (2016).

Y. Yanase, K. Sakamoto, K. Kobayashi, and M. Hide, “Diagnosis of immediate-type allergy using surface plasmon resonance,” Opt. Mater. Express 6(4), 1339–1348 (2016).
[Crossref]

J. K. Park, R. H. Kim, P. Prabhakaran, S. Kim, and K.-S. Lee, “Highly biocompatible amphiphilic perylenediimide derivative for bioimaging,” Opt. Mater. Express 6(5), 1420–1428 (2016).
[Crossref]

E. Camargo, P. C. J. Jaime, C.-F. Lin, M.-S. Lin, T.-Y. Yu, M.-C. Wu, S.-Y. Lai, and M.-Y. Wang, “Chemical and optical characterization of Psammodictyon panduriforme (Gregory) Mann comb. nov. (Bacillariophyta) frustules,” Opt. Mater. Express 6(5), 1436–1443 (2016).
[Crossref]

Y. Ebihara, Y. Sugimachi, T. Noriki, M. Shimojo, and K. Kajikawa, “Biometamaterial: dark ultrathin gold film fabricated on taro leaf,” Opt. Mater. Express 6(5), 1429–1435 (2016).
[Crossref]

M. Focsan, A. M. Craciun, S. Astilean, and P. L. Baldeck, “Two-photon fabrication of three-dimensional silver microstructures in microfluidic channels for volumetric surface-enhanced Raman scattering detection,” Opt. Mater. Express 6(5), 1587–1593 (2016).
[Crossref]

H. Nishi, K. Asami, and T. Tatsuma, “CuS nanoplates for LSPR sensing in the second biological optical window,” Opt. Mater. Express 6(4), 1043–1048 (2016).
[Crossref]

T. Ohno, C. Wadell, S. Inagaki, J. Shi, Y. Nakamura, S. Matsushita, and T. Sannomiya, “Hole-size tuning and sensing performance of hexagonal plasmonic nanohole arrays,” Opt. Mater. Express 6(5), 1594–1603 (2016).
[Crossref]

M. Fujii, N. Nakashima, and Y. Niidome, “Assemblies of gold nanorods for efficient SALDI mass spectrometry,” Opt. Mater. Express 6(4), 1376–1383 (2016).
[Crossref]

K. Sugawa, D. Sugimoto, H. Tahara, T. Eguchi, M. Katoh, K. Uchida, S. Jin, T. Ube, T. Ishiguro, and J. Otsuki, “Refractive index susceptibility of palladium nanoplates with plasmonic resonance in the visible region,” Opt. Mater. Express 6(3), 859–867 (2016).
[Crossref]

G. Santos, F. I. S. Ferrara, F. Zhao, D. Rodrigues, and W. C. Shih, “Photothermal inactivation of heat-resistant bacteria on nanoporous gold disk arrays,” Opt. Mater. Express 6(4), 1217–1229 (2016).
[Crossref]

T. Johann, K. Schmidt, P. Prabhakaran, R. Zentel, and K.-S. Lee, “Two-photon absorption dye based on 2,5-bis(phenylacrylonitrile)-thiophene with aggregration enhanced fluorescence,” Opt. Mater. Express 6(4), 1296–1305 (2016).
[Crossref]

Y. Yamamoto, E. Shimizu, Y. Nishimura, T. Iida, and S. Tokonami, “Development of a rapid bacterial counting method based on photothermal assembling,” Opt. Mater. Express 6(4), 1280–1285 (2016).
[Crossref]

R. Pang, S. Zhou, X. Hu, Z. Xie, X. Liu, H. Duadi, and D. Fixler, “New diffusion reflection imaging system using gold nanorods coated with poly(3,4-ethylenedioxythiophene),” Opt. Mater. Express 6(4), 1238–1246 (2016).
[Crossref]

N. Li, X. Wen, J. Liu, B. Wang, Q. Zhan, and S. He, “Yb3+-enhanced UCNP@SiO2 nanocomposites for consecutive imaging, photothermal-controlled drug delivery and cancer therapy,” Opt. Mater. Express 6(4), 1161–1171 (2016).
[Crossref]

C.-B. Yu, Y. Wu, X.-L. Liu, B.-C. Yao, F. Fu, Y. Gong, Y.-J. Rao, and Y.-F. Chen, “Graphene oxide deposited microfiber knot resonator for gas sensing,” Opt. Mater. Express 6(3), 727–733 (2016).
[Crossref]

G. J. Lee, E. H. Choi, W. K. Ham, C. K. Hwangbo, M. J. Cho, and D. H. Choi, “Circular dichroism, surface-enhanced Raman scattering, and spectroscopic ellipsometry studies of chiral polyfluorene-phenylene films,” Opt. Mater. Express 6(3), 767–781 (2016).
[Crossref]

2011 (1)

K. Deisseroth, “Optogenetics,” Nat. Methods 8(1), 26–29 (2011).
[Crossref] [PubMed]

2009 (1)

2007 (1)

A. J. Steckl, “DNA-a new material for photonics?” Nat. Photonics 1(1), 3–5 (2007).
[Crossref]

Anvari, B.

Asami, K.

Astilean, S.

Baldeck, P. L.

Bashkatov, A. N.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Bolze, F.

Bucharskaya, A. B.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Burgess, L.

Burns, J.

Camargo, E.

Chen, J.

Chen, Y.-F.

Cho, H.-J.

Cho, M. J.

Choi, D. H.

Choi, E. H.

Craciun, A. M.

Dalko, P.

C. Tran, P. Dunkel, H. Dhimane, D. Ogden, and P. Dalko, “5-Aryl-dimethylamino quinoline-derived two-photon sensitive probes,” Opt. Mater. Express, in press (2016).

Deisseroth, K.

K. Deisseroth, “Optogenetics,” Nat. Methods 8(1), 26–29 (2011).
[Crossref] [PubMed]

Dhimane, H.

C. Tran, P. Dunkel, H. Dhimane, D. Ogden, and P. Dalko, “5-Aryl-dimethylamino quinoline-derived two-photon sensitive probes,” Opt. Mater. Express, in press (2016).

Dolotov, L. E.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Duadi, H.

Dunkel, P.

C. Tran, P. Dunkel, H. Dhimane, D. Ogden, and P. Dalko, “5-Aryl-dimethylamino quinoline-derived two-photon sensitive probes,” Opt. Mater. Express, in press (2016).

Ebihara, Y.

Eguchi, T.

Ferrara, F. I. S.

Fixler, D.

Focsan, M.

Fu, F.

Fujii, M.

Genina, E. A.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Gong, Y.

Gorin, D. A.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Guerrero, Y.

Ham, W. K.

He, S.

Hell, S. W.

Hide, M.

Hu, X.

Hwangbo, C. K.

Iida, T.

Inagaki, S.

Ishiguro, T.

Jaime, P. C. J.

Jeong, K.

Jin, S.

Johann, T.

Kajikawa, K.

Kang, C. S.

Katoh, M.

Kim, R. H.

Kim, S.

Kim, Y.

Kobayashi, K.

Kwon, I. C.

Lai, S.-Y.

Lee, G. J.

Lee, K.-S.

Lee, Y.-D.

Li, N.

Lin, C.-F.

Lin, M.-S.

Liu, J.

Liu, X.

Liu, X.-L.

Mac, J.

Maslyakova, G. N.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Matsushita, S.

Moneron, G.

Nakamura, Y.

Nakashima, N.

Navolokin, N. A.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Niidome, Y.

Nishi, H.

Nishimura, Y.

Noriki, T.

Nuñez, V.

Ogden, D.

C. Tran, P. Dunkel, H. Dhimane, D. Ogden, and P. Dalko, “5-Aryl-dimethylamino quinoline-derived two-photon sensitive probes,” Opt. Mater. Express, in press (2016).

Ohno, T.

Otsuki, J.

Pang, R.

Park, J. K.

Piant, S.

Prabhakaran, P.

Rao, Y.-J.

Rodrigues, D.

Sakamoto, K.

Sannomiya, T.

Santos, G.

Schmidt, K.

Shi, J.

Shih, W. C.

Shimizu, E.

Shimojo, M.

Specht, A.

Steckl, A. J.

A. J. Steckl, “DNA-a new material for photonics?” Nat. Photonics 1(1), 3–5 (2007).
[Crossref]

Sugawa, K.

Sugimachi, Y.

Sugimoto, D.

Sukhorukov, G. B.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Svenskaya, Y. I.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Tahara, H.

Tatsuma, T.

Terentyuk, G. S.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Tokonami, S.

Tran, C.

C. Tran, P. Dunkel, H. Dhimane, D. Ogden, and P. Dalko, “5-Aryl-dimethylamino quinoline-derived two-photon sensitive probes,” Opt. Mater. Express, in press (2016).

Tuchin, V. V.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Ube, T.

Uchida, K.

Vullev, V.

Wadell, C.

Wang, B.

Wang, M.-Y.

Wen, X.

Wilson, B.

Wolter, N. E.

Wu, M.-C.

Wu, Y.

Xie, Z.

Yamamoto, Y.

Yanase, Y.

Yanina, I. Yu.

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

Yao, B.-C.

Yu, C.-B.

Yu, T.-Y.

Zentel, R.

Zhan, Q.

Zhao, F.

Zheng, G.

Zhou, S.

Biomed. Opt. Express (2)

Nat. Methods (1)

K. Deisseroth, “Optogenetics,” Nat. Methods 8(1), 26–29 (2011).
[Crossref] [PubMed]

Nat. Photonics (1)

A. J. Steckl, “DNA-a new material for photonics?” Nat. Photonics 1(1), 3–5 (2007).
[Crossref]

Opt. Express (1)

Opt. Mater. Express (19)

Q. Zhan, B. Wang, X. Wen, and S. He, “Controlling the excitation of upconverting luminescence for biomedical theranostics: neodymium sensitizing,” Opt. Mater. Express 6(4), 1011–1023 (2016).
[Crossref]

K. Jeong, Y. Kim, C. S. Kang, H.-J. Cho, Y.-D. Lee, I. C. Kwon, and S. Kim, “Nanoprobes for optical bioimaging,” Opt. Mater. Express 6(4), 1262–1279 (2016).
[Crossref]

S. Piant, F. Bolze, and A. Specht, “Two-photon uncaging, from neuroscience to materials,” Opt. Mater. Express 6(5), 1679–1691 (2016).

Y. Yanase, K. Sakamoto, K. Kobayashi, and M. Hide, “Diagnosis of immediate-type allergy using surface plasmon resonance,” Opt. Mater. Express 6(4), 1339–1348 (2016).
[Crossref]

J. K. Park, R. H. Kim, P. Prabhakaran, S. Kim, and K.-S. Lee, “Highly biocompatible amphiphilic perylenediimide derivative for bioimaging,” Opt. Mater. Express 6(5), 1420–1428 (2016).
[Crossref]

E. Camargo, P. C. J. Jaime, C.-F. Lin, M.-S. Lin, T.-Y. Yu, M.-C. Wu, S.-Y. Lai, and M.-Y. Wang, “Chemical and optical characterization of Psammodictyon panduriforme (Gregory) Mann comb. nov. (Bacillariophyta) frustules,” Opt. Mater. Express 6(5), 1436–1443 (2016).
[Crossref]

Y. Ebihara, Y. Sugimachi, T. Noriki, M. Shimojo, and K. Kajikawa, “Biometamaterial: dark ultrathin gold film fabricated on taro leaf,” Opt. Mater. Express 6(5), 1429–1435 (2016).
[Crossref]

M. Focsan, A. M. Craciun, S. Astilean, and P. L. Baldeck, “Two-photon fabrication of three-dimensional silver microstructures in microfluidic channels for volumetric surface-enhanced Raman scattering detection,” Opt. Mater. Express 6(5), 1587–1593 (2016).
[Crossref]

H. Nishi, K. Asami, and T. Tatsuma, “CuS nanoplates for LSPR sensing in the second biological optical window,” Opt. Mater. Express 6(4), 1043–1048 (2016).
[Crossref]

T. Ohno, C. Wadell, S. Inagaki, J. Shi, Y. Nakamura, S. Matsushita, and T. Sannomiya, “Hole-size tuning and sensing performance of hexagonal plasmonic nanohole arrays,” Opt. Mater. Express 6(5), 1594–1603 (2016).
[Crossref]

M. Fujii, N. Nakashima, and Y. Niidome, “Assemblies of gold nanorods for efficient SALDI mass spectrometry,” Opt. Mater. Express 6(4), 1376–1383 (2016).
[Crossref]

K. Sugawa, D. Sugimoto, H. Tahara, T. Eguchi, M. Katoh, K. Uchida, S. Jin, T. Ube, T. Ishiguro, and J. Otsuki, “Refractive index susceptibility of palladium nanoplates with plasmonic resonance in the visible region,” Opt. Mater. Express 6(3), 859–867 (2016).
[Crossref]

G. Santos, F. I. S. Ferrara, F. Zhao, D. Rodrigues, and W. C. Shih, “Photothermal inactivation of heat-resistant bacteria on nanoporous gold disk arrays,” Opt. Mater. Express 6(4), 1217–1229 (2016).
[Crossref]

T. Johann, K. Schmidt, P. Prabhakaran, R. Zentel, and K.-S. Lee, “Two-photon absorption dye based on 2,5-bis(phenylacrylonitrile)-thiophene with aggregration enhanced fluorescence,” Opt. Mater. Express 6(4), 1296–1305 (2016).
[Crossref]

Y. Yamamoto, E. Shimizu, Y. Nishimura, T. Iida, and S. Tokonami, “Development of a rapid bacterial counting method based on photothermal assembling,” Opt. Mater. Express 6(4), 1280–1285 (2016).
[Crossref]

R. Pang, S. Zhou, X. Hu, Z. Xie, X. Liu, H. Duadi, and D. Fixler, “New diffusion reflection imaging system using gold nanorods coated with poly(3,4-ethylenedioxythiophene),” Opt. Mater. Express 6(4), 1238–1246 (2016).
[Crossref]

N. Li, X. Wen, J. Liu, B. Wang, Q. Zhan, and S. He, “Yb3+-enhanced UCNP@SiO2 nanocomposites for consecutive imaging, photothermal-controlled drug delivery and cancer therapy,” Opt. Mater. Express 6(4), 1161–1171 (2016).
[Crossref]

C.-B. Yu, Y. Wu, X.-L. Liu, B.-C. Yao, F. Fu, Y. Gong, Y.-J. Rao, and Y.-F. Chen, “Graphene oxide deposited microfiber knot resonator for gas sensing,” Opt. Mater. Express 6(3), 727–733 (2016).
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G. J. Lee, E. H. Choi, W. K. Ham, C. K. Hwangbo, M. J. Cho, and D. H. Choi, “Circular dichroism, surface-enhanced Raman scattering, and spectroscopic ellipsometry studies of chiral polyfluorene-phenylene films,” Opt. Mater. Express 6(3), 767–781 (2016).
[Crossref]

Other (3)

E. A. Genina, Y. I. Svenskaya, I. Yu. Yanina, L. E. Dolotov, N. A. Navolokin, A. N. Bashkatov, G. S. Terentyuk, A. B. Bucharskaya, G. N. Maslyakova, D. A. Gorin, V. V. Tuchin, and G. B. Sukhorukov, “In vivo optical monitoring of transcutaneous delivery of calcium carbonate microcontainers,” Biomed. Opt. Express, in press (2016).
[Crossref]

C. Tran, P. Dunkel, H. Dhimane, D. Ogden, and P. Dalko, “5-Aryl-dimethylamino quinoline-derived two-photon sensitive probes,” Opt. Mater. Express, in press (2016).

A. Diaspro, Confocal and Two-Photon Microscopy: Foundations, Applications and Advances (Wiley-VCH, 2001), p 516.

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