A. Parvizi, E. Van den Broek, and C. T. Koch, “Recovering low spatial frequencies in wavefront sensing based on intensity measurements,” Adv. Struct. Chem. Imag. 2, 3 (2016).

[Crossref]

A. Parvizi, W. Van den Broek, and C. T. Koch, “Gradient flipping algorithm: introducing non-convex constraints in wavefront reconstructions with the transport of intensity equation,” Opt. Express 24, 8344–8359 (2016).

[Crossref]
[PubMed]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Multi-filter transport of intensity equation solver with equalized noise sensitivity,” Opt. Express 23, 23092–23107 (2015).

[Crossref]
[PubMed]

M. H. Jenkins and T. K. Gaylord, “Quantitative phase microscopy via optimized inversion of the phase optical transfer function,” Appl. Opt. 54, 8566–8579 (2015).

[Crossref]
[PubMed]

M. Agour, “Optimal strategies for wave fields sensing by means of multiple planes phase retrieval,” J. Opt. 17, 85604–85616 (2015).

[Crossref]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Optimum plane selection for transport-of-intensity-equation-based solvers,” Appl. Opt. 53, 7050–7075 (2014).

[Crossref]
[PubMed]

C. T. Koch, “Towards full-resolution inline electron holography,” Micron 63, 69–75 (2014).

[Crossref]

Z. Jingshan, R. A. Claus, L. Tian, and L. Waller, “Transport of intensity phase imaging by intensity spectrum fitting of exponentially spaced defocus planes,” Opt. Express 22, 10661–10674 (2014).

[Crossref]
[PubMed]

M. H. Jenkins, J. M. Long, and T. H. Gaylord, “Multifilter phase imaging with partially coherent light,” Appl. Opt. 53, 29–39 (2014).

[Crossref]

C. Zou, Q. Chen, and A. Asundi, “Boundary-artifact-free phase retrieval with the transport of intensity equation: fast solution with use of discrete cosine transform,” Opt. Express 22, 9220 (2014).

[Crossref]

C. Ophus and T. Ewalds, “Guidelines for quantitative reconstruction of complex exit waves in HRTEM,” Ultramicrosc. 113, 88–95 (2012).

[Crossref]

C. T. Koch, “A flux-preserving non-linear inline holography reconstruction algorithm for partially coherent electrons,” Ultramicrosc. 108, 141–150 (2008).

[Crossref]

G. Oszlányi and A. Süto, “The charge flipping algorithm,” Acta Cryst. A 64, 123–134 (2008).

[Crossref]

K. Ishizuka and B. Allman, “Phase measurement of atomic resolution image using transport of intensity equation,” J. Electron Microsc. 54, 191–197 (2005).

D. Paganin, A. Barty, P. J. McMahon, and K. A. Nugent, “Quantitative phase-amplitude microscopy. III: The effects of noise,” J. Microsc. 214, 51–61 (2004).

[Crossref]
[PubMed]

E. D. Barone-Nugent, A. Berty, and K. A. Nugent, “Quantitative phase-amplitude microscopy I: optical microscopy,” J. Microsc. 206, 194–203 (2002).

[Crossref]
[PubMed]

W. O. Saxton and W. Baumeister, “The correlation averaging of a regularly arranged bacterial cell envelope protein,” J. Microsc. 127, 127–138 (1982).

[Crossref]
[PubMed]

M. Agour, “Optimal strategies for wave fields sensing by means of multiple planes phase retrieval,” J. Opt. 17, 85604–85616 (2015).

[Crossref]

K. Ishizuka and B. Allman, “Phase measurement of atomic resolution image using transport of intensity equation,” J. Electron Microsc. 54, 191–197 (2005).

E. D. Barone-Nugent, A. Berty, and K. A. Nugent, “Quantitative phase-amplitude microscopy I: optical microscopy,” J. Microsc. 206, 194–203 (2002).

[Crossref]
[PubMed]

D. Paganin, A. Barty, P. J. McMahon, and K. A. Nugent, “Quantitative phase-amplitude microscopy. III: The effects of noise,” J. Microsc. 214, 51–61 (2004).

[Crossref]
[PubMed]

W. O. Saxton and W. Baumeister, “The correlation averaging of a regularly arranged bacterial cell envelope protein,” J. Microsc. 127, 127–138 (1982).

[Crossref]
[PubMed]

E. D. Barone-Nugent, A. Berty, and K. A. Nugent, “Quantitative phase-amplitude microscopy I: optical microscopy,” J. Microsc. 206, 194–203 (2002).

[Crossref]
[PubMed]

C. Ophus and T. Ewalds, “Guidelines for quantitative reconstruction of complex exit waves in HRTEM,” Ultramicrosc. 113, 88–95 (2012).

[Crossref]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Multi-filter transport of intensity equation solver with equalized noise sensitivity,” Opt. Express 23, 23092–23107 (2015).

[Crossref]
[PubMed]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Optimum plane selection for transport-of-intensity-equation-based solvers,” Appl. Opt. 53, 7050–7075 (2014).

[Crossref]
[PubMed]

M. H. Jenkins, J. M. Long, and T. H. Gaylord, “Multifilter phase imaging with partially coherent light,” Appl. Opt. 53, 29–39 (2014).

[Crossref]

T. E. Gureyev, “Composite techniques for phase retrieval in the fresnel region,” Opt. Commun. 220, 49–58 (2003).

[Crossref]

T. E. Gureyev, A. Roberts, and K. A. Nugent, “Partially coherent fields, the transport-of-intensity equation, and phase uniqueness,” J. Opt. Soc. Am. A 12, 1942–1946 (1995).

[Crossref]

K. Ishizuka and B. Allman, “Phase measurement of atomic resolution image using transport of intensity equation,” J. Electron Microsc. 54, 191–197 (2005).

A. Parvizi, W. Van den Broek, and C. T. Koch, “Gradient flipping algorithm: introducing non-convex constraints in wavefront reconstructions with the transport of intensity equation,” Opt. Express 24, 8344–8359 (2016).

[Crossref]
[PubMed]

A. Parvizi, E. Van den Broek, and C. T. Koch, “Recovering low spatial frequencies in wavefront sensing based on intensity measurements,” Adv. Struct. Chem. Imag. 2, 3 (2016).

[Crossref]

C. T. Koch, “Towards full-resolution inline electron holography,” Micron 63, 69–75 (2014).

[Crossref]

C. T. Koch, “A flux-preserving non-linear inline holography reconstruction algorithm for partially coherent electrons,” Ultramicrosc. 108, 141–150 (2008).

[Crossref]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Multi-filter transport of intensity equation solver with equalized noise sensitivity,” Opt. Express 23, 23092–23107 (2015).

[Crossref]
[PubMed]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Optimum plane selection for transport-of-intensity-equation-based solvers,” Appl. Opt. 53, 7050–7075 (2014).

[Crossref]
[PubMed]

M. H. Jenkins, J. M. Long, and T. H. Gaylord, “Multifilter phase imaging with partially coherent light,” Appl. Opt. 53, 29–39 (2014).

[Crossref]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Multi-filter transport of intensity equation solver with equalized noise sensitivity,” Opt. Express 23, 23092–23107 (2015).

[Crossref]
[PubMed]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Optimum plane selection for transport-of-intensity-equation-based solvers,” Appl. Opt. 53, 7050–7075 (2014).

[Crossref]
[PubMed]

D. Paganin, A. Barty, P. J. McMahon, and K. A. Nugent, “Quantitative phase-amplitude microscopy. III: The effects of noise,” J. Microsc. 214, 51–61 (2004).

[Crossref]
[PubMed]

D. Paganin, A. Barty, P. J. McMahon, and K. A. Nugent, “Quantitative phase-amplitude microscopy. III: The effects of noise,” J. Microsc. 214, 51–61 (2004).

[Crossref]
[PubMed]

E. D. Barone-Nugent, A. Berty, and K. A. Nugent, “Quantitative phase-amplitude microscopy I: optical microscopy,” J. Microsc. 206, 194–203 (2002).

[Crossref]
[PubMed]

T. E. Gureyev, A. Roberts, and K. A. Nugent, “Partially coherent fields, the transport-of-intensity equation, and phase uniqueness,” J. Opt. Soc. Am. A 12, 1942–1946 (1995).

[Crossref]

C. Ophus and T. Ewalds, “Guidelines for quantitative reconstruction of complex exit waves in HRTEM,” Ultramicrosc. 113, 88–95 (2012).

[Crossref]

G. Oszlányi and A. Süto, “The charge flipping algorithm,” Acta Cryst. A 64, 123–134 (2008).

[Crossref]

D. Paganin, A. Barty, P. J. McMahon, and K. A. Nugent, “Quantitative phase-amplitude microscopy. III: The effects of noise,” J. Microsc. 214, 51–61 (2004).

[Crossref]
[PubMed]

A. Parvizi, E. Van den Broek, and C. T. Koch, “Recovering low spatial frequencies in wavefront sensing based on intensity measurements,” Adv. Struct. Chem. Imag. 2, 3 (2016).

[Crossref]

A. Parvizi, W. Van den Broek, and C. T. Koch, “Gradient flipping algorithm: introducing non-convex constraints in wavefront reconstructions with the transport of intensity equation,” Opt. Express 24, 8344–8359 (2016).

[Crossref]
[PubMed]

G. Popescu, Quantitative Phase Imaging of Cells and Tissues (McGraw-Hill, 2011).

W. O. Saxton and W. Baumeister, “The correlation averaging of a regularly arranged bacterial cell envelope protein,” J. Microsc. 127, 127–138 (1982).

[Crossref]
[PubMed]

G. Oszlányi and A. Süto, “The charge flipping algorithm,” Acta Cryst. A 64, 123–134 (2008).

[Crossref]

A. Parvizi, E. Van den Broek, and C. T. Koch, “Recovering low spatial frequencies in wavefront sensing based on intensity measurements,” Adv. Struct. Chem. Imag. 2, 3 (2016).

[Crossref]

G. Oszlányi and A. Süto, “The charge flipping algorithm,” Acta Cryst. A 64, 123–134 (2008).

[Crossref]

A. Parvizi, E. Van den Broek, and C. T. Koch, “Recovering low spatial frequencies in wavefront sensing based on intensity measurements,” Adv. Struct. Chem. Imag. 2, 3 (2016).

[Crossref]

M. H. Jenkins, J. M. Long, and T. H. Gaylord, “Multifilter phase imaging with partially coherent light,” Appl. Opt. 53, 29–39 (2014).

[Crossref]

F. Roddier, “Wavefront sensing and the irradiance transport equation,” Appl. Opt. 29, 1402–1403 (1990).

[Crossref]
[PubMed]

M. H. Jenkins and T. K. Gaylord, “Quantitative phase microscopy via optimized inversion of the phase optical transfer function,” Appl. Opt. 54, 8566–8579 (2015).

[Crossref]
[PubMed]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Optimum plane selection for transport-of-intensity-equation-based solvers,” Appl. Opt. 53, 7050–7075 (2014).

[Crossref]
[PubMed]

K. Ishizuka and B. Allman, “Phase measurement of atomic resolution image using transport of intensity equation,” J. Electron Microsc. 54, 191–197 (2005).

E. D. Barone-Nugent, A. Berty, and K. A. Nugent, “Quantitative phase-amplitude microscopy I: optical microscopy,” J. Microsc. 206, 194–203 (2002).

[Crossref]
[PubMed]

D. Paganin, A. Barty, P. J. McMahon, and K. A. Nugent, “Quantitative phase-amplitude microscopy. III: The effects of noise,” J. Microsc. 214, 51–61 (2004).

[Crossref]
[PubMed]

W. O. Saxton and W. Baumeister, “The correlation averaging of a regularly arranged bacterial cell envelope protein,” J. Microsc. 127, 127–138 (1982).

[Crossref]
[PubMed]

M. Agour, “Optimal strategies for wave fields sensing by means of multiple planes phase retrieval,” J. Opt. 17, 85604–85616 (2015).

[Crossref]

M. Fernández-Guasti, J. L. Jiménez, F. Granados-Agustín, and A. Conejo-Rodríguez, “Amplitude and phase representation of monochromatic fields in physical optics,” J. Opt. Soc. Am. A 20, 1629–1634 (2003).

[Crossref]

T. E. Gureyev, A. Roberts, and K. A. Nugent, “Partially coherent fields, the transport-of-intensity equation, and phase uniqueness,” J. Opt. Soc. Am. A 12, 1942–1946 (1995).

[Crossref]

C. T. Koch, “Towards full-resolution inline electron holography,” Micron 63, 69–75 (2014).

[Crossref]

T. E. Gureyev, “Composite techniques for phase retrieval in the fresnel region,” Opt. Commun. 220, 49–58 (2003).

[Crossref]

Z. Jingshan, R. A. Claus, L. Tian, and L. Waller, “Transport of intensity phase imaging by intensity spectrum fitting of exponentially spaced defocus planes,” Opt. Express 22, 10661–10674 (2014).

[Crossref]
[PubMed]

C. Zou, Q. Chen, and A. Asundi, “Boundary-artifact-free phase retrieval with the transport of intensity equation: fast solution with use of discrete cosine transform,” Opt. Express 22, 9220 (2014).

[Crossref]

J. Martínez-Carranza, K. Falaggis, and T. Kozacki, “Multi-filter transport of intensity equation solver with equalized noise sensitivity,” Opt. Express 23, 23092–23107 (2015).

[Crossref]
[PubMed]

A. Parvizi, W. Van den Broek, and C. T. Koch, “Gradient flipping algorithm: introducing non-convex constraints in wavefront reconstructions with the transport of intensity equation,” Opt. Express 24, 8344–8359 (2016).

[Crossref]
[PubMed]

C. T. Koch, “A flux-preserving non-linear inline holography reconstruction algorithm for partially coherent electrons,” Ultramicrosc. 108, 141–150 (2008).

[Crossref]

C. Ophus and T. Ewalds, “Guidelines for quantitative reconstruction of complex exit waves in HRTEM,” Ultramicrosc. 113, 88–95 (2012).

[Crossref]

G. Popescu, Quantitative Phase Imaging of Cells and Tissues (McGraw-Hill, 2011).

F. de la Peña and et al., “HyperSpy 1.3”, DOI: , http://hyperspy.org

[Crossref]

Code available at: http://github.com/AEljarrat/inline_holo