Abstract

Optical coherence microscopy (OCM) is an interferometric technique providing 3D images of biological samples with micrometric resolution and penetration depth of several hundreds of micrometers. OCM differs from optical coherence tomography (OCT) in that it uses a high numerical aperture (NA) objective to achieve high lateral resolution. However, the high NA also reduces the depth-of-field (DOF), scaling with 1/NA2. Interferometric synthetic aperture microscopy (ISAM) is a computed imaging technique providing a solution to this trade-off between resolution and DOF. An alternative hardware method to achieve an extended DOF is to use a non-Gaussian illumination. Extended focus OCM (xfOCM) uses a Bessel beam to obtain a narrow and extended illumination volume. xfOCM detects back-scattered light using a Gaussian mode in order to maintain good sensitivity. However, the Gaussian detection mode limits the DOF. In this work, we present extended ISAM (xISAM), a method combining the benefits of both ISAM and xfOCM. xISAM uses the 3D coherent transfer function (CTF) to generalize the ISAM algorithm to different system configurations. We demonstrate xISAM both on simulated and experimental data, showing that xISAM attains a combination of high transverse resolution and extended DOF which has so far been unobtainable through conventional ISAM or xfOCM individually.

Published by The Optical Society under the terms of the Creative Commons Attribution 4.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article's title, journal citation, and DOI.

Full Article  |  PDF Article
OSA Recommended Articles
Multifocal interferometric synthetic aperture microscopy

Yang Xu, Xiong Kai Benjamin Chng, Steven G. Adie, Stephen A. Boppart, and P. Scott Carney
Opt. Express 22(13) 16606-16618 (2014)

Nonparaxial vector-field modeling of optical coherence tomography and interferometric synthetic aperture microscopy

Brynmor J. Davis, Simon C. Schlachter, Daniel L. Marks, Tyler S. Ralston, Stephen A. Boppart, and P. Scott Carney
J. Opt. Soc. Am. A 24(9) 2527-2542 (2007)

Computed optical interferometric tomography for high-speed volumetric cellular imaging

Yuan-Zhi Liu, Nathan D. Shemonski, Steven G. Adie, Adeel Ahmad, Andrew J. Bower, P. Scott Carney, and Stephen A. Boppart
Biomed. Opt. Express 5(9) 2988-3000 (2014)

References

  • View by:
  • |
  • |
  • |

  1. D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
    [Crossref] [PubMed]
  2. W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
    [Crossref] [PubMed]
  3. J. G. Fujimoto, “Optical coherence tomography for ultrahigh resolution in vivo imaging,” Nat. Biotech. 21(11), 1361–1367 (2003).
    [Crossref]
  4. A. F. Fercher, W. Drexler, C. K. Hitzenberger, and T. Lasser, “Optical coherence tomography,” Reports on Progress in Physics 66, 239–303 (2003).
    [Crossref]
  5. Y. Yasuno, J.-I. Sugisaka, Y. Sando, Y. Nakamura, S. Makita, M. Itoh, and T. Yatagai, “Non-iterative numerical method for laterally superresolving Fourier domain optical coherence tomography,” Opt. Express 14(3), 1006–1020 (2006).
    [Crossref] [PubMed]
  6. T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Interferometric synthetic aperture microscopy,” Nat. Phys. 3, 129–134 (2007).
    [Crossref] [PubMed]
  7. L. Yu, J. Zhang, J. Su, Q. Wang, S. Guo, and Z. Chen, “Improved lateral resolution in optical coherence tomography by digital focusing using two-dimensional numerical diffraction method,” Opt. Express 15(12), 7634–7641 (2007).
    [Crossref] [PubMed]
  8. A. Kumar, W. Drexler, and R. A. Leitgeb, “Numerical focusing methods for full field OCT: a comparison based on a common signal model,” Opt. Express 22(13), 16061–16078 (2014).
    [Crossref] [PubMed]
  9. F. A. South, Y.-Z. Liu, P. S. Carney, and S. A. Boppart, “Computed Optical Interferometric Imaging: Methods, Achievements, and Challenges,” IEEE J. of Selected Topics in Quantum Electronics 22(3), 6800911 (2016).
    [Crossref] [PubMed]
  10. Y.-Z. Liu, F. A. South, Y. Xu, P. S. Carney, and S. A. Boppart, “Computational optical coherence tomography [Invited],” Biomed. Opt. Express 8(3), 1549–1574 (2017).
    [Crossref] [PubMed]
  11. T. S. Ralston, D. L. Marks, S. A. Boppart, and P. S. Carney, “Inverse scattering for high-resolution interferometric microscopy,” Opt. Lett. 31(24), 3585–3587 (2006).
    [Crossref] [PubMed]
  12. T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Inverse scattering for optical coherence tomography,” J. Opt. Soc. Am. A 23(5), 1027–1037 (2006).
    [Crossref]
  13. T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Real-time interferometric synthetic aperture microscopy,” Opt. Express 16(4), 2555–2569 (2008).
    [Crossref] [PubMed]
  14. A. Ahmad, N. D. Shemonski, S. G. Adie, H.-S. Kim, W.-M. W. Hwu, P. S. Carney, and S. A. Boppart, “Real-time in vivo computed optical interferometric tomography,” Nat. Photonics 7(6), 444–448 (2013).
    [Crossref] [PubMed]
  15. Y. Xu, Y.-Z. Liu, S. A. Boppart, and P. S. Carney, “Automated interferometric synthetic aperture microscopy and computational adaptive optics for improved optical coherence tomography,” Appl. Opt. 55(8), 2034–2041 (2016).
    [Crossref] [PubMed]
  16. F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
    [Crossref]
  17. A. Divetia, T.-H. Hsieh, J. Zhang, Z. Chen, M. Bachman, and G.-P. Li, “Dynamically focused optical coherence tomography for endoscopic applications,” Appl. Phys. Lett. 86, 103902 (2005).
    [Crossref]
  18. A. D. Aguirre, J. Sawinski, S.-W. Huang, C. Zhou, W. Denk, and J. G. Fujimoto, “High speed optical coherence microscopy with autofocus adjustment and a miniaturized endoscopic imaging probe,” Opt. Express 18(5), 4222–4239 (2010).
    [Crossref] [PubMed]
  19. B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
    [Crossref]
  20. Z. Ding, H. Ren, Y. Zhao, J. S. Nelson, and Z. Chen, “High-resolution optical coherence tomography over a large depth range with an axicon lens,” Opt. Lett. 27(4), 243–245 (2002).
    [Crossref]
  21. R. A. Leitgeb, M. Villiger, A. H. Bachmann, L. Steinmann, and T. Lasser, “Extended focus depth for Fourier domain optical coherence microscopy,” Opt. Lett. 31(16), 2450–2452 (2006).
    [Crossref] [PubMed]
  22. C. Blatter, B. Grajciar, C. M. Eigenwillig, W. Wieser, B. R. Biedermann, R. Huber, and R. A. Leitgeb, “Extended focus high-speed swept source OCT with self-reconstructive illumination,” Opt. Express 19(13), 12141–12155 (2011).
    [Crossref] [PubMed]
  23. L. Liu, C. Liu, W. C. Howe, C. J. R. Sheppard, and N. Chen, “Binary-phase spatial filter for real-time swept-source optical coherence microscopy,” Opt. Lett. 32(16), 2375–2377 (2007).
    [Crossref] [PubMed]
  24. J. Mo, M. de Groot, and J. F. de Boer, “Focus-extension by depth-encoded synthetic aperture in Optical Coherence Tomography,” Opt. Express 21(8), 10048–10061 (2013).
    [Crossref] [PubMed]
  25. J. Jang, J. Lim, H. Yu, H. Choi, J. Ha, J.-H. Park, W.-Y. Oh, W. Jang, SD. Lee, and YK. Park, “Complex wavefront shaping for optimal depth-selective focusing in optical coherence tomography,” Opt. Express 21(3), 2890–2902 (2013).
    [Crossref] [PubMed]
  26. D. Lorenser, C. C. Singe, A. Curatolo, and D. D. Sampson, “Energy-efficient low-Fresnel-number Bessel beams and their application in optical coherence tomography,” Opt. Lett. 39(3), 548–551 (2014).
    [Crossref] [PubMed]
  27. J. Xing, J. Kim, and H. Yoo, “Design and fabrication of an optical probe with a phase filter for extended depth of focus,” Opt. Express 24(2), 1037–1044 (2016).
    [Crossref] [PubMed]
  28. M. Villiger, J. Goulley, M. Friedrich, A. Grapin-Botton, P. Meda, T. Lasser, and R. A. Leitgeb, “In vivo imaging of murine endocrine islets of Langerhans with extended-focus optical coherence microscopy,” Diabetologia 52, 1599–1607 (2009).
    [Crossref] [PubMed]
  29. T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
    [Crossref]
  30. C. Berclaz, J. Goulley, M. Villiger, C. Pache, A. Bouwens, E. Martin-Williams, D. Van de Ville, A. C. Davison, A. Grapin-Botton, and T. Lasser, “Diabetes imaging-quantitative assessment of islets of Langerhans distribution in murine pancreas using extended-focus optical coherence microscopy,” Biomed. Opt. Express 3(6), 1365–1380 (2012).
    [Crossref] [PubMed]
  31. A. Bouwens, T. Bolmont, D. Szlag, C. Berclaz, and T. Lasser, “Quantitative cerebral blood flow imaging with extended-focus optical coherence microscopy,” Opt. Lett. 39(1), 37–40 (2014).
    [Crossref]
  32. C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
    [Crossref] [PubMed]
  33. C. J. R. Sheppard, S. S. Kou, and C. Depeursinge, “Reconstruction in interferometric synthetic aperture microscopy: comparison with optical coherence tomography and digital holographic microscopy,” J. Opt. Soc. Am. A 29(3), 244–250 (2012).
    [Crossref]
  34. M. A. Choma, A. K. Ellerbee, S. Yazdanfar, and J. A. Izatt, “Doppler flow imaging of cytoplasmic streaming using spectral domain phase microscopy,” J. Biomed. Opt. 11(2), 024014 (2006).
    [Crossref] [PubMed]
  35. B. H. Park, M. C. Pierce, B. Cense, S.-H. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain domain optical coherence tomography at 1.3 μm,” Opt. Express 13(11), 3931–3944 (2005).
    [Crossref] [PubMed]
  36. N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part I): Stability requirements,” Opt. Express 22(16), 19183–19197 (2014).
    [Crossref] [PubMed]
  37. M. Villiger and T. Lasser, “Image formation and tomogram reconstruction in optical coherence microscopy,” J. Opt. Soc. Am. A 27(10), 2216–2228 (2010).
    [Crossref]
  38. C. J. R. Sheppard, M. Gu, Y. Kawata, and S. Kawata, “Three-dimensional transfer functions for high-aperture systems,” J. Opt. Soc. Am. A 11(2) 593–598 (1994).
    [Crossref]
  39. M. Gu, Advanced Optical Imaging Theory (Springer, 2000).
    [Crossref]
  40. C. W. McCutchen, “Generalized Aperture and the Three-Dimensional Diffraction Image,” J. Opt. Soc. Am. 54(2), 240–244 (1964).
    [Crossref]
  41. T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Phase Stability Technique for Inverse Scattering in Optical Coherence Tomography,” in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, (IEEE, 2006), pp. 578–581.
  42. J. Lee, V. Srinivasan, H. Radhakrishnan, and D. A. Boas, “Motion correction for phase-resolved dynamic optical coherence tomography imaging of rodent cerebral cortex,” Opt. Express 19(22), 21258–21270 (2011).
    [Crossref] [PubMed]
  43. N. D. Shemonski, S. S. Ahn, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography,” Biomed. Opt. Express 5(12), 4131–4143 (2014).
    [Crossref]
  44. N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part II): in vivo stability assessment,” Opt. Express 22(16), 19314–19326 (2014).
    [Crossref] [PubMed]
  45. S. G. Adie, B. W. Graf, A. Ahmad, P. S. Carney, and S. A. Boppart, “Computational adaptive optics for broadband optical interferometric tomography of biological tissue,” Proc. Natl. Acad. Sci. U.S.A. 109(19), 7175–7180 (2012).
    [Crossref] [PubMed]
  46. Y. Z. Liu, N. D. Shemonski, S. G. Adie, A. Ahmad, A. J. Bower, P. S. Carney, and S. A. Boppart, “Computed optical interferometric tomography for high-speed volumetric cellular imaging,” Biomed. Opt. Express 5(9), 2988–3000 (2014).
    [Crossref] [PubMed]
  47. M. Villiger, C. Pache, and T. Lasser, “Dark-field optical coherence microscopy,” Opt. Lett. 35(20), 3489–3491 (2010).
    [Crossref] [PubMed]
  48. C. Pache, N. L. Bocchio, A. Bouwens, M. Villiger, C. Berclaz, J. Goulley, M. I. Gibson, C. Santschi, and T. Lasser, “Fast three-dimensional imaging of gold nanoparticles in living cells with photothermal optical lock-in Optical Coherence Microscopy,” Opt. Express 20(19), 21385–21399 (2012).
    [Crossref] [PubMed]
  49. M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
    [Crossref] [PubMed]
  50. P. J. Marchand, A. Bouwens, D. Szlag, D. Nguyen, A. Descloux, M. Sison, S. Coquoz, J. Extermann, and T. Lasser, “Visible spectrum extended-focus optical coherence microscopy for label-free sub-cellular tomography,” Biomed. Opt. Express 8(7), 3343–3359 (2017).
    [Crossref] [PubMed]
  51. N. D. Shemonski, F. A. South, Y.-Z. Liu, S. G. Adie, P. S. Carney, and S. A. Boppart, “Computational high-resolution optical imaging of the living human retina,” Nat. Photonics 9, 440–443 (2015).
    [Crossref]
  52. A. Kumar, W. Drexler, and R. A. Leitgeb, “Subaperture correlation based digital adaptive optics for full field optical coherence tomography,” Opt. Express 21(9), 10850–10566 (2013).
    [Crossref] [PubMed]
  53. A. Kumar, T. Kamali, R. Platzer, A. Unterhuber, W. Drexler, and R. A. Leitgeb, “Anisotropic aberration correction using region of interest based digital adaptive optics in Fourier domain OCT,” Biomed. Opt. Express 6(4), 1124–1134 (2015).
    [Crossref] [PubMed]

2017 (3)

2016 (3)

2015 (3)

N. D. Shemonski, F. A. South, Y.-Z. Liu, S. G. Adie, P. S. Carney, and S. A. Boppart, “Computational high-resolution optical imaging of the living human retina,” Nat. Photonics 9, 440–443 (2015).
[Crossref]

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

A. Kumar, T. Kamali, R. Platzer, A. Unterhuber, W. Drexler, and R. A. Leitgeb, “Anisotropic aberration correction using region of interest based digital adaptive optics in Fourier domain OCT,” Biomed. Opt. Express 6(4), 1124–1134 (2015).
[Crossref] [PubMed]

2014 (7)

A. Bouwens, T. Bolmont, D. Szlag, C. Berclaz, and T. Lasser, “Quantitative cerebral blood flow imaging with extended-focus optical coherence microscopy,” Opt. Lett. 39(1), 37–40 (2014).
[Crossref]

D. Lorenser, C. C. Singe, A. Curatolo, and D. D. Sampson, “Energy-efficient low-Fresnel-number Bessel beams and their application in optical coherence tomography,” Opt. Lett. 39(3), 548–551 (2014).
[Crossref] [PubMed]

A. Kumar, W. Drexler, and R. A. Leitgeb, “Numerical focusing methods for full field OCT: a comparison based on a common signal model,” Opt. Express 22(13), 16061–16078 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part I): Stability requirements,” Opt. Express 22(16), 19183–19197 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part II): in vivo stability assessment,” Opt. Express 22(16), 19314–19326 (2014).
[Crossref] [PubMed]

Y. Z. Liu, N. D. Shemonski, S. G. Adie, A. Ahmad, A. J. Bower, P. S. Carney, and S. A. Boppart, “Computed optical interferometric tomography for high-speed volumetric cellular imaging,” Biomed. Opt. Express 5(9), 2988–3000 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. S. Ahn, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography,” Biomed. Opt. Express 5(12), 4131–4143 (2014).
[Crossref]

2013 (4)

2012 (5)

2011 (2)

2010 (4)

2009 (1)

M. Villiger, J. Goulley, M. Friedrich, A. Grapin-Botton, P. Meda, T. Lasser, and R. A. Leitgeb, “In vivo imaging of murine endocrine islets of Langerhans with extended-focus optical coherence microscopy,” Diabetologia 52, 1599–1607 (2009).
[Crossref] [PubMed]

2008 (1)

2007 (3)

2006 (5)

2005 (2)

B. H. Park, M. C. Pierce, B. Cense, S.-H. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain domain optical coherence tomography at 1.3 μm,” Opt. Express 13(11), 3931–3944 (2005).
[Crossref] [PubMed]

A. Divetia, T.-H. Hsieh, J. Zhang, Z. Chen, M. Bachman, and G.-P. Li, “Dynamically focused optical coherence tomography for endoscopic applications,” Appl. Phys. Lett. 86, 103902 (2005).
[Crossref]

2003 (2)

J. G. Fujimoto, “Optical coherence tomography for ultrahigh resolution in vivo imaging,” Nat. Biotech. 21(11), 1361–1367 (2003).
[Crossref]

A. F. Fercher, W. Drexler, C. K. Hitzenberger, and T. Lasser, “Optical coherence tomography,” Reports on Progress in Physics 66, 239–303 (2003).
[Crossref]

2002 (1)

2001 (1)

W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
[Crossref] [PubMed]

1999 (1)

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

1994 (1)

1991 (1)

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

1964 (1)

Adie, S. G.

N. D. Shemonski, F. A. South, Y.-Z. Liu, S. G. Adie, P. S. Carney, and S. A. Boppart, “Computational high-resolution optical imaging of the living human retina,” Nat. Photonics 9, 440–443 (2015).
[Crossref]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part I): Stability requirements,” Opt. Express 22(16), 19183–19197 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part II): in vivo stability assessment,” Opt. Express 22(16), 19314–19326 (2014).
[Crossref] [PubMed]

Y. Z. Liu, N. D. Shemonski, S. G. Adie, A. Ahmad, A. J. Bower, P. S. Carney, and S. A. Boppart, “Computed optical interferometric tomography for high-speed volumetric cellular imaging,” Biomed. Opt. Express 5(9), 2988–3000 (2014).
[Crossref] [PubMed]

A. Ahmad, N. D. Shemonski, S. G. Adie, H.-S. Kim, W.-M. W. Hwu, P. S. Carney, and S. A. Boppart, “Real-time in vivo computed optical interferometric tomography,” Nat. Photonics 7(6), 444–448 (2013).
[Crossref] [PubMed]

S. G. Adie, B. W. Graf, A. Ahmad, P. S. Carney, and S. A. Boppart, “Computational adaptive optics for broadband optical interferometric tomography of biological tissue,” Proc. Natl. Acad. Sci. U.S.A. 109(19), 7175–7180 (2012).
[Crossref] [PubMed]

Aguirre, A. D.

Ahmad, A.

Y. Z. Liu, N. D. Shemonski, S. G. Adie, A. Ahmad, A. J. Bower, P. S. Carney, and S. A. Boppart, “Computed optical interferometric tomography for high-speed volumetric cellular imaging,” Biomed. Opt. Express 5(9), 2988–3000 (2014).
[Crossref] [PubMed]

A. Ahmad, N. D. Shemonski, S. G. Adie, H.-S. Kim, W.-M. W. Hwu, P. S. Carney, and S. A. Boppart, “Real-time in vivo computed optical interferometric tomography,” Nat. Photonics 7(6), 444–448 (2013).
[Crossref] [PubMed]

S. G. Adie, B. W. Graf, A. Ahmad, P. S. Carney, and S. A. Boppart, “Computational adaptive optics for broadband optical interferometric tomography of biological tissue,” Proc. Natl. Acad. Sci. U.S.A. 109(19), 7175–7180 (2012).
[Crossref] [PubMed]

Ahn, S. S.

Bachman, M.

A. Divetia, T.-H. Hsieh, J. Zhang, Z. Chen, M. Bachman, and G.-P. Li, “Dynamically focused optical coherence tomography for endoscopic applications,” Appl. Phys. Lett. 86, 103902 (2005).
[Crossref]

Bachmann, A. H.

Berclaz, C.

Biedermann, B. R.

Blatter, C.

Boas, D. A.

Bocchio, N. L.

Bolmont, T.

A. Bouwens, T. Bolmont, D. Szlag, C. Berclaz, and T. Lasser, “Quantitative cerebral blood flow imaging with extended-focus optical coherence microscopy,” Opt. Lett. 39(1), 37–40 (2014).
[Crossref]

T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
[Crossref]

Boppart, S. A.

Y.-Z. Liu, F. A. South, Y. Xu, P. S. Carney, and S. A. Boppart, “Computational optical coherence tomography [Invited],” Biomed. Opt. Express 8(3), 1549–1574 (2017).
[Crossref] [PubMed]

Y. Xu, Y.-Z. Liu, S. A. Boppart, and P. S. Carney, “Automated interferometric synthetic aperture microscopy and computational adaptive optics for improved optical coherence tomography,” Appl. Opt. 55(8), 2034–2041 (2016).
[Crossref] [PubMed]

F. A. South, Y.-Z. Liu, P. S. Carney, and S. A. Boppart, “Computed Optical Interferometric Imaging: Methods, Achievements, and Challenges,” IEEE J. of Selected Topics in Quantum Electronics 22(3), 6800911 (2016).
[Crossref] [PubMed]

N. D. Shemonski, F. A. South, Y.-Z. Liu, S. G. Adie, P. S. Carney, and S. A. Boppart, “Computational high-resolution optical imaging of the living human retina,” Nat. Photonics 9, 440–443 (2015).
[Crossref]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part II): in vivo stability assessment,” Opt. Express 22(16), 19314–19326 (2014).
[Crossref] [PubMed]

Y. Z. Liu, N. D. Shemonski, S. G. Adie, A. Ahmad, A. J. Bower, P. S. Carney, and S. A. Boppart, “Computed optical interferometric tomography for high-speed volumetric cellular imaging,” Biomed. Opt. Express 5(9), 2988–3000 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. S. Ahn, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography,” Biomed. Opt. Express 5(12), 4131–4143 (2014).
[Crossref]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part I): Stability requirements,” Opt. Express 22(16), 19183–19197 (2014).
[Crossref] [PubMed]

A. Ahmad, N. D. Shemonski, S. G. Adie, H.-S. Kim, W.-M. W. Hwu, P. S. Carney, and S. A. Boppart, “Real-time in vivo computed optical interferometric tomography,” Nat. Photonics 7(6), 444–448 (2013).
[Crossref] [PubMed]

S. G. Adie, B. W. Graf, A. Ahmad, P. S. Carney, and S. A. Boppart, “Computational adaptive optics for broadband optical interferometric tomography of biological tissue,” Proc. Natl. Acad. Sci. U.S.A. 109(19), 7175–7180 (2012).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Real-time interferometric synthetic aperture microscopy,” Opt. Express 16(4), 2555–2569 (2008).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Interferometric synthetic aperture microscopy,” Nat. Phys. 3, 129–134 (2007).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Inverse scattering for optical coherence tomography,” J. Opt. Soc. Am. A 23(5), 1027–1037 (2006).
[Crossref]

T. S. Ralston, D. L. Marks, S. A. Boppart, and P. S. Carney, “Inverse scattering for high-resolution interferometric microscopy,” Opt. Lett. 31(24), 3585–3587 (2006).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Phase Stability Technique for Inverse Scattering in Optical Coherence Tomography,” in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, (IEEE, 2006), pp. 578–581.

Bouma, B. E.

Bouwens, A.

P. J. Marchand, A. Bouwens, D. Szlag, D. Nguyen, A. Descloux, M. Sison, S. Coquoz, J. Extermann, and T. Lasser, “Visible spectrum extended-focus optical coherence microscopy for label-free sub-cellular tomography,” Biomed. Opt. Express 8(7), 3343–3359 (2017).
[Crossref] [PubMed]

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

A. Bouwens, T. Bolmont, D. Szlag, C. Berclaz, and T. Lasser, “Quantitative cerebral blood flow imaging with extended-focus optical coherence microscopy,” Opt. Lett. 39(1), 37–40 (2014).
[Crossref]

C. Pache, N. L. Bocchio, A. Bouwens, M. Villiger, C. Berclaz, J. Goulley, M. I. Gibson, C. Santschi, and T. Lasser, “Fast three-dimensional imaging of gold nanoparticles in living cells with photothermal optical lock-in Optical Coherence Microscopy,” Opt. Express 20(19), 21385–21399 (2012).
[Crossref] [PubMed]

C. Berclaz, J. Goulley, M. Villiger, C. Pache, A. Bouwens, E. Martin-Williams, D. Van de Ville, A. C. Davison, A. Grapin-Botton, and T. Lasser, “Diabetes imaging-quantitative assessment of islets of Langerhans distribution in murine pancreas using extended-focus optical coherence microscopy,” Biomed. Opt. Express 3(6), 1365–1380 (2012).
[Crossref] [PubMed]

T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
[Crossref]

Bower, A. J.

Brom, M.

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

Carney, P. S.

Y.-Z. Liu, F. A. South, Y. Xu, P. S. Carney, and S. A. Boppart, “Computational optical coherence tomography [Invited],” Biomed. Opt. Express 8(3), 1549–1574 (2017).
[Crossref] [PubMed]

Y. Xu, Y.-Z. Liu, S. A. Boppart, and P. S. Carney, “Automated interferometric synthetic aperture microscopy and computational adaptive optics for improved optical coherence tomography,” Appl. Opt. 55(8), 2034–2041 (2016).
[Crossref] [PubMed]

F. A. South, Y.-Z. Liu, P. S. Carney, and S. A. Boppart, “Computed Optical Interferometric Imaging: Methods, Achievements, and Challenges,” IEEE J. of Selected Topics in Quantum Electronics 22(3), 6800911 (2016).
[Crossref] [PubMed]

N. D. Shemonski, F. A. South, Y.-Z. Liu, S. G. Adie, P. S. Carney, and S. A. Boppart, “Computational high-resolution optical imaging of the living human retina,” Nat. Photonics 9, 440–443 (2015).
[Crossref]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part II): in vivo stability assessment,” Opt. Express 22(16), 19314–19326 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. S. Ahn, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography,” Biomed. Opt. Express 5(12), 4131–4143 (2014).
[Crossref]

Y. Z. Liu, N. D. Shemonski, S. G. Adie, A. Ahmad, A. J. Bower, P. S. Carney, and S. A. Boppart, “Computed optical interferometric tomography for high-speed volumetric cellular imaging,” Biomed. Opt. Express 5(9), 2988–3000 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part I): Stability requirements,” Opt. Express 22(16), 19183–19197 (2014).
[Crossref] [PubMed]

A. Ahmad, N. D. Shemonski, S. G. Adie, H.-S. Kim, W.-M. W. Hwu, P. S. Carney, and S. A. Boppart, “Real-time in vivo computed optical interferometric tomography,” Nat. Photonics 7(6), 444–448 (2013).
[Crossref] [PubMed]

S. G. Adie, B. W. Graf, A. Ahmad, P. S. Carney, and S. A. Boppart, “Computational adaptive optics for broadband optical interferometric tomography of biological tissue,” Proc. Natl. Acad. Sci. U.S.A. 109(19), 7175–7180 (2012).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Real-time interferometric synthetic aperture microscopy,” Opt. Express 16(4), 2555–2569 (2008).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Interferometric synthetic aperture microscopy,” Nat. Phys. 3, 129–134 (2007).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, S. A. Boppart, and P. S. Carney, “Inverse scattering for high-resolution interferometric microscopy,” Opt. Lett. 31(24), 3585–3587 (2006).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Inverse scattering for optical coherence tomography,” J. Opt. Soc. Am. A 23(5), 1027–1037 (2006).
[Crossref]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Phase Stability Technique for Inverse Scattering in Optical Coherence Tomography,” in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, (IEEE, 2006), pp. 578–581.

Cense, B.

Chakrabortty, S.

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

Chang, W.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Chen, N.

Chen, Z.

Choi, H.

Choma, M. A.

M. A. Choma, A. K. Ellerbee, S. Yazdanfar, and J. A. Izatt, “Doppler flow imaging of cytoplasmic streaming using spectral domain phase microscopy,” J. Biomed. Opt. 11(2), 024014 (2006).
[Crossref] [PubMed]

Coquoz, S.

Curatolo, A.

Davison, A. C.

de Boer, J. F.

de Groot, M.

Denk, W.

Depeursinge, C.

Descloux, A.

Dimitrov, M.

T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
[Crossref]

Ding, Z.

Divetia, A.

A. Divetia, T.-H. Hsieh, J. Zhang, Z. Chen, M. Bachman, and G.-P. Li, “Dynamically focused optical coherence tomography for endoscopic applications,” Appl. Phys. Lett. 86, 103902 (2005).
[Crossref]

Drexler, W.

A. Kumar, T. Kamali, R. Platzer, A. Unterhuber, W. Drexler, and R. A. Leitgeb, “Anisotropic aberration correction using region of interest based digital adaptive optics in Fourier domain OCT,” Biomed. Opt. Express 6(4), 1124–1134 (2015).
[Crossref] [PubMed]

A. Kumar, W. Drexler, and R. A. Leitgeb, “Numerical focusing methods for full field OCT: a comparison based on a common signal model,” Opt. Express 22(13), 16061–16078 (2014).
[Crossref] [PubMed]

A. Kumar, W. Drexler, and R. A. Leitgeb, “Subaperture correlation based digital adaptive optics for full field optical coherence tomography,” Opt. Express 21(9), 10850–10566 (2013).
[Crossref] [PubMed]

A. F. Fercher, W. Drexler, C. K. Hitzenberger, and T. Lasser, “Optical coherence tomography,” Reports on Progress in Physics 66, 239–303 (2003).
[Crossref]

W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
[Crossref] [PubMed]

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

Eigenwillig, C. M.

Ekim, S.

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

Ellerbee, A. K.

M. A. Choma, A. K. Ellerbee, S. Yazdanfar, and J. A. Izatt, “Doppler flow imaging of cytoplasmic streaming using spectral domain phase microscopy,” J. Biomed. Opt. 11(2), 024014 (2006).
[Crossref] [PubMed]

Extermann, J.

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

P. J. Marchand, A. Bouwens, D. Szlag, D. Nguyen, A. Descloux, M. Sison, S. Coquoz, J. Extermann, and T. Lasser, “Visible spectrum extended-focus optical coherence microscopy for label-free sub-cellular tomography,” Biomed. Opt. Express 8(7), 3343–3359 (2017).
[Crossref] [PubMed]

Fercher, A. F.

A. F. Fercher, W. Drexler, C. K. Hitzenberger, and T. Lasser, “Optical coherence tomography,” Reports on Progress in Physics 66, 239–303 (2003).
[Crossref]

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

Flotte, T.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Fraering, P. C.

T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
[Crossref]

Friedrich, M.

M. Villiger, J. Goulley, M. Friedrich, A. Grapin-Botton, P. Meda, T. Lasser, and R. A. Leitgeb, “In vivo imaging of murine endocrine islets of Langerhans with extended-focus optical coherence microscopy,” Diabetologia 52, 1599–1607 (2009).
[Crossref] [PubMed]

Fujimoto, J. G.

A. D. Aguirre, J. Sawinski, S.-W. Huang, C. Zhou, W. Denk, and J. G. Fujimoto, “High speed optical coherence microscopy with autofocus adjustment and a miniaturized endoscopic imaging probe,” Opt. Express 18(5), 4222–4239 (2010).
[Crossref] [PubMed]

J. G. Fujimoto, “Optical coherence tomography for ultrahigh resolution in vivo imaging,” Nat. Biotech. 21(11), 1361–1367 (2003).
[Crossref]

W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
[Crossref] [PubMed]

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Ghanta, R. K.

W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
[Crossref] [PubMed]

Gibson, M. I.

Gotthardt, M.

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

Goulley, J.

Graf, B. W.

S. G. Adie, B. W. Graf, A. Ahmad, P. S. Carney, and S. A. Boppart, “Computational adaptive optics for broadband optical interferometric tomography of biological tissue,” Proc. Natl. Acad. Sci. U.S.A. 109(19), 7175–7180 (2012).
[Crossref] [PubMed]

Grajciar, B.

Grapin-Botton, A.

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

C. Berclaz, J. Goulley, M. Villiger, C. Pache, A. Bouwens, E. Martin-Williams, D. Van de Ville, A. C. Davison, A. Grapin-Botton, and T. Lasser, “Diabetes imaging-quantitative assessment of islets of Langerhans distribution in murine pancreas using extended-focus optical coherence microscopy,” Biomed. Opt. Express 3(6), 1365–1380 (2012).
[Crossref] [PubMed]

M. Villiger, J. Goulley, M. Friedrich, A. Grapin-Botton, P. Meda, T. Lasser, and R. A. Leitgeb, “In vivo imaging of murine endocrine islets of Langerhans with extended-focus optical coherence microscopy,” Diabetologia 52, 1599–1607 (2009).
[Crossref] [PubMed]

Gregory, K.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Gu, M.

Guo, S.

Ha, J.

Hee, M. R.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Hitzenberger, C. K.

A. F. Fercher, W. Drexler, C. K. Hitzenberger, and T. Lasser, “Optical coherence tomography,” Reports on Progress in Physics 66, 239–303 (2003).
[Crossref]

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

Howe, W. C.

Hsieh, T.-H.

A. Divetia, T.-H. Hsieh, J. Zhang, Z. Chen, M. Bachman, and G.-P. Li, “Dynamically focused optical coherence tomography for endoscopic applications,” Appl. Phys. Lett. 86, 103902 (2005).
[Crossref]

Huang, D.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Huang, S.-W.

Huber, R.

Hwu, W.-M. W.

A. Ahmad, N. D. Shemonski, S. G. Adie, H.-S. Kim, W.-M. W. Hwu, P. S. Carney, and S. A. Boppart, “Real-time in vivo computed optical interferometric tomography,” Nat. Photonics 7(6), 444–448 (2013).
[Crossref] [PubMed]

Itoh, M.

Izatt, J. A.

M. A. Choma, A. K. Ellerbee, S. Yazdanfar, and J. A. Izatt, “Doppler flow imaging of cytoplasmic streaming using spectral domain phase microscopy,” J. Biomed. Opt. 11(2), 024014 (2006).
[Crossref] [PubMed]

Jang, J.

Jang, W.

Joosten, L.

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

Kamali, T.

Kärtner, F. X.

W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
[Crossref] [PubMed]

Kawata, S.

Kawata, Y.

Kim, H.-S.

A. Ahmad, N. D. Shemonski, S. G. Adie, H.-S. Kim, W.-M. W. Hwu, P. S. Carney, and S. A. Boppart, “Real-time in vivo computed optical interferometric tomography,” Nat. Photonics 7(6), 444–448 (2013).
[Crossref] [PubMed]

Kim, J.

Kou, S. S.

Kumar, A.

Lasser, T.

P. J. Marchand, A. Bouwens, D. Szlag, D. Nguyen, A. Descloux, M. Sison, S. Coquoz, J. Extermann, and T. Lasser, “Visible spectrum extended-focus optical coherence microscopy for label-free sub-cellular tomography,” Biomed. Opt. Express 8(7), 3343–3359 (2017).
[Crossref] [PubMed]

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

A. Bouwens, T. Bolmont, D. Szlag, C. Berclaz, and T. Lasser, “Quantitative cerebral blood flow imaging with extended-focus optical coherence microscopy,” Opt. Lett. 39(1), 37–40 (2014).
[Crossref]

C. Pache, N. L. Bocchio, A. Bouwens, M. Villiger, C. Berclaz, J. Goulley, M. I. Gibson, C. Santschi, and T. Lasser, “Fast three-dimensional imaging of gold nanoparticles in living cells with photothermal optical lock-in Optical Coherence Microscopy,” Opt. Express 20(19), 21385–21399 (2012).
[Crossref] [PubMed]

C. Berclaz, J. Goulley, M. Villiger, C. Pache, A. Bouwens, E. Martin-Williams, D. Van de Ville, A. C. Davison, A. Grapin-Botton, and T. Lasser, “Diabetes imaging-quantitative assessment of islets of Langerhans distribution in murine pancreas using extended-focus optical coherence microscopy,” Biomed. Opt. Express 3(6), 1365–1380 (2012).
[Crossref] [PubMed]

T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
[Crossref]

M. Villiger, C. Pache, and T. Lasser, “Dark-field optical coherence microscopy,” Opt. Lett. 35(20), 3489–3491 (2010).
[Crossref] [PubMed]

M. Villiger and T. Lasser, “Image formation and tomogram reconstruction in optical coherence microscopy,” J. Opt. Soc. Am. A 27(10), 2216–2228 (2010).
[Crossref]

M. Villiger, J. Goulley, M. Friedrich, A. Grapin-Botton, P. Meda, T. Lasser, and R. A. Leitgeb, “In vivo imaging of murine endocrine islets of Langerhans with extended-focus optical coherence microscopy,” Diabetologia 52, 1599–1607 (2009).
[Crossref] [PubMed]

R. A. Leitgeb, M. Villiger, A. H. Bachmann, L. Steinmann, and T. Lasser, “Extended focus depth for Fourier domain optical coherence microscopy,” Opt. Lett. 31(16), 2450–2452 (2006).
[Crossref] [PubMed]

A. F. Fercher, W. Drexler, C. K. Hitzenberger, and T. Lasser, “Optical coherence tomography,” Reports on Progress in Physics 66, 239–303 (2003).
[Crossref]

Lee, J.

Lee, K. K. C.

B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
[Crossref]

Lee, SD.

Leitgeb, R. A.

Leung, M. K. K.

B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
[Crossref]

Lexer, F.

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

Li, G.-P.

A. Divetia, T.-H. Hsieh, J. Zhang, Z. Chen, M. Bachman, and G.-P. Li, “Dynamically focused optical coherence tomography for endoscopic applications,” Appl. Phys. Lett. 86, 103902 (2005).
[Crossref]

Lim, J.

Lin, C. P.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Liu, C.

Liu, L.

Liu, Y. Z.

Liu, Y.-Z.

Y.-Z. Liu, F. A. South, Y. Xu, P. S. Carney, and S. A. Boppart, “Computational optical coherence tomography [Invited],” Biomed. Opt. Express 8(3), 1549–1574 (2017).
[Crossref] [PubMed]

Y. Xu, Y.-Z. Liu, S. A. Boppart, and P. S. Carney, “Automated interferometric synthetic aperture microscopy and computational adaptive optics for improved optical coherence tomography,” Appl. Opt. 55(8), 2034–2041 (2016).
[Crossref] [PubMed]

F. A. South, Y.-Z. Liu, P. S. Carney, and S. A. Boppart, “Computed Optical Interferometric Imaging: Methods, Achievements, and Challenges,” IEEE J. of Selected Topics in Quantum Electronics 22(3), 6800911 (2016).
[Crossref] [PubMed]

N. D. Shemonski, F. A. South, Y.-Z. Liu, S. G. Adie, P. S. Carney, and S. A. Boppart, “Computational high-resolution optical imaging of the living human retina,” Nat. Photonics 9, 440–443 (2015).
[Crossref]

N. D. Shemonski, S. S. Ahn, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography,” Biomed. Opt. Express 5(12), 4131–4143 (2014).
[Crossref]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part I): Stability requirements,” Opt. Express 22(16), 19183–19197 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part II): in vivo stability assessment,” Opt. Express 22(16), 19314–19326 (2014).
[Crossref] [PubMed]

Lopez, A.

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

Lorenser, D.

Makita, S.

Marchand, P. J.

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

P. J. Marchand, A. Bouwens, D. Szlag, D. Nguyen, A. Descloux, M. Sison, S. Coquoz, J. Extermann, and T. Lasser, “Visible spectrum extended-focus optical coherence microscopy for label-free sub-cellular tomography,” Biomed. Opt. Express 8(7), 3343–3359 (2017).
[Crossref] [PubMed]

Mariampillai, A.

B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
[Crossref]

Marks, D. L.

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Real-time interferometric synthetic aperture microscopy,” Opt. Express 16(4), 2555–2569 (2008).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Interferometric synthetic aperture microscopy,” Nat. Phys. 3, 129–134 (2007).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Inverse scattering for optical coherence tomography,” J. Opt. Soc. Am. A 23(5), 1027–1037 (2006).
[Crossref]

T. S. Ralston, D. L. Marks, S. A. Boppart, and P. S. Carney, “Inverse scattering for high-resolution interferometric microscopy,” Opt. Lett. 31(24), 3585–3587 (2006).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Phase Stability Technique for Inverse Scattering in Optical Coherence Tomography,” in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, (IEEE, 2006), pp. 578–581.

Martin-Williams, E.

McCutchen, C. W.

Meda, P.

M. Villiger, J. Goulley, M. Friedrich, A. Grapin-Botton, P. Meda, T. Lasser, and R. A. Leitgeb, “In vivo imaging of murine endocrine islets of Langerhans with extended-focus optical coherence microscopy,” Diabetologia 52, 1599–1607 (2009).
[Crossref] [PubMed]

Mo, J.

Molebny, S.

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

Morgner, U.

W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
[Crossref] [PubMed]

Mujat, M.

Munce, N. R.

B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
[Crossref]

Nahas, A.

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

Nakamura, Y.

Nelson, J. S.

Nguyen, D.

Oh, W.-Y.

Pache, C.

Park, B. H.

Park, J.-H.

Park, YK.

Pierce, M. C.

Platzer, R.

Puliafito, C. A.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Radhakrishnan, H.

Ralston, T. S.

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Real-time interferometric synthetic aperture microscopy,” Opt. Express 16(4), 2555–2569 (2008).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Interferometric synthetic aperture microscopy,” Nat. Phys. 3, 129–134 (2007).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Inverse scattering for optical coherence tomography,” J. Opt. Soc. Am. A 23(5), 1027–1037 (2006).
[Crossref]

T. S. Ralston, D. L. Marks, S. A. Boppart, and P. S. Carney, “Inverse scattering for high-resolution interferometric microscopy,” Opt. Lett. 31(24), 3585–3587 (2006).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Phase Stability Technique for Inverse Scattering in Optical Coherence Tomography,” in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, (IEEE, 2006), pp. 578–581.

Ren, H.

Sampson, D. D.

Sando, Y.

Santschi, C.

Sattmann, H.

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

Sawinski, J.

Schuman, J. S.

W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
[Crossref] [PubMed]

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Shemonski, N. D.

Sheppard, C. J. R.

Singe, C. C.

Sison, M.

P. J. Marchand, A. Bouwens, D. Szlag, D. Nguyen, A. Descloux, M. Sison, S. Coquoz, J. Extermann, and T. Lasser, “Visible spectrum extended-focus optical coherence microscopy for label-free sub-cellular tomography,” Biomed. Opt. Express 8(7), 3343–3359 (2017).
[Crossref] [PubMed]

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

South, F. A.

Srinivasan, V.

Standish, B. A.

B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
[Crossref]

Steinmann, L.

Sticker, M.

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

Stinson, W. G.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Su, J.

Sugisaka, J.-I.

Swanson, E. A.

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Szlag, D.

Tearney, G. J.

Unterhuber, A.

Van de Ville, D.

Villiger, M.

C. Berclaz, J. Goulley, M. Villiger, C. Pache, A. Bouwens, E. Martin-Williams, D. Van de Ville, A. C. Davison, A. Grapin-Botton, and T. Lasser, “Diabetes imaging-quantitative assessment of islets of Langerhans distribution in murine pancreas using extended-focus optical coherence microscopy,” Biomed. Opt. Express 3(6), 1365–1380 (2012).
[Crossref] [PubMed]

C. Pache, N. L. Bocchio, A. Bouwens, M. Villiger, C. Berclaz, J. Goulley, M. I. Gibson, C. Santschi, and T. Lasser, “Fast three-dimensional imaging of gold nanoparticles in living cells with photothermal optical lock-in Optical Coherence Microscopy,” Opt. Express 20(19), 21385–21399 (2012).
[Crossref] [PubMed]

T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
[Crossref]

M. Villiger, C. Pache, and T. Lasser, “Dark-field optical coherence microscopy,” Opt. Lett. 35(20), 3489–3491 (2010).
[Crossref] [PubMed]

M. Villiger and T. Lasser, “Image formation and tomogram reconstruction in optical coherence microscopy,” J. Opt. Soc. Am. A 27(10), 2216–2228 (2010).
[Crossref]

M. Villiger, J. Goulley, M. Friedrich, A. Grapin-Botton, P. Meda, T. Lasser, and R. A. Leitgeb, “In vivo imaging of murine endocrine islets of Langerhans with extended-focus optical coherence microscopy,” Diabetologia 52, 1599–1607 (2009).
[Crossref] [PubMed]

R. A. Leitgeb, M. Villiger, A. H. Bachmann, L. Steinmann, and T. Lasser, “Extended focus depth for Fourier domain optical coherence microscopy,” Opt. Lett. 31(16), 2450–2452 (2006).
[Crossref] [PubMed]

Vitkin, I. A.

B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
[Crossref]

Wang, Q.

Wegenast-Braun, B. M.

T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
[Crossref]

Weil, T.

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

Wieser, W.

Xing, J.

Xu, Y.

Yang, V. X. D.

B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
[Crossref]

Yasuno, Y.

Yatagai, T.

Yazdanfar, S.

M. A. Choma, A. K. Ellerbee, S. Yazdanfar, and J. A. Izatt, “Doppler flow imaging of cytoplasmic streaming using spectral domain phase microscopy,” J. Biomed. Opt. 11(2), 024014 (2006).
[Crossref] [PubMed]

Yoo, H.

Yu, H.

Yu, L.

Yun, S.-H.

Zhang, J.

L. Yu, J. Zhang, J. Su, Q. Wang, S. Guo, and Z. Chen, “Improved lateral resolution in optical coherence tomography by digital focusing using two-dimensional numerical diffraction method,” Opt. Express 15(12), 7634–7641 (2007).
[Crossref] [PubMed]

A. Divetia, T.-H. Hsieh, J. Zhang, Z. Chen, M. Bachman, and G.-P. Li, “Dynamically focused optical coherence tomography for endoscopic applications,” Appl. Phys. Lett. 86, 103902 (2005).
[Crossref]

Zhao, Y.

Zhou, C.

Appl. Opt. (1)

Appl. Phys. Lett. (1)

A. Divetia, T.-H. Hsieh, J. Zhang, Z. Chen, M. Bachman, and G.-P. Li, “Dynamically focused optical coherence tomography for endoscopic applications,” Appl. Phys. Lett. 86, 103902 (2005).
[Crossref]

Biomed. Opt. Express (6)

Y.-Z. Liu, F. A. South, Y. Xu, P. S. Carney, and S. A. Boppart, “Computational optical coherence tomography [Invited],” Biomed. Opt. Express 8(3), 1549–1574 (2017).
[Crossref] [PubMed]

P. J. Marchand, A. Bouwens, D. Szlag, D. Nguyen, A. Descloux, M. Sison, S. Coquoz, J. Extermann, and T. Lasser, “Visible spectrum extended-focus optical coherence microscopy for label-free sub-cellular tomography,” Biomed. Opt. Express 8(7), 3343–3359 (2017).
[Crossref] [PubMed]

C. Berclaz, J. Goulley, M. Villiger, C. Pache, A. Bouwens, E. Martin-Williams, D. Van de Ville, A. C. Davison, A. Grapin-Botton, and T. Lasser, “Diabetes imaging-quantitative assessment of islets of Langerhans distribution in murine pancreas using extended-focus optical coherence microscopy,” Biomed. Opt. Express 3(6), 1365–1380 (2012).
[Crossref] [PubMed]

Y. Z. Liu, N. D. Shemonski, S. G. Adie, A. Ahmad, A. J. Bower, P. S. Carney, and S. A. Boppart, “Computed optical interferometric tomography for high-speed volumetric cellular imaging,” Biomed. Opt. Express 5(9), 2988–3000 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. S. Ahn, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography,” Biomed. Opt. Express 5(12), 4131–4143 (2014).
[Crossref]

A. Kumar, T. Kamali, R. Platzer, A. Unterhuber, W. Drexler, and R. A. Leitgeb, “Anisotropic aberration correction using region of interest based digital adaptive optics in Fourier domain OCT,” Biomed. Opt. Express 6(4), 1124–1134 (2015).
[Crossref] [PubMed]

Diabetologia (1)

M. Villiger, J. Goulley, M. Friedrich, A. Grapin-Botton, P. Meda, T. Lasser, and R. A. Leitgeb, “In vivo imaging of murine endocrine islets of Langerhans with extended-focus optical coherence microscopy,” Diabetologia 52, 1599–1607 (2009).
[Crossref] [PubMed]

IEEE J. of Selected Topics in Quantum Electronics (1)

F. A. South, Y.-Z. Liu, P. S. Carney, and S. A. Boppart, “Computed Optical Interferometric Imaging: Methods, Achievements, and Challenges,” IEEE J. of Selected Topics in Quantum Electronics 22(3), 6800911 (2016).
[Crossref] [PubMed]

J. Biomed. Opt. (1)

M. A. Choma, A. K. Ellerbee, S. Yazdanfar, and J. A. Izatt, “Doppler flow imaging of cytoplasmic streaming using spectral domain phase microscopy,” J. Biomed. Opt. 11(2), 024014 (2006).
[Crossref] [PubMed]

J. Mod. Opt. (1)

F. Lexer, C. K. Hitzenberger, W. Drexler, S. Molebny, H. Sattmann, M. Sticker, and A. F. Fercher, “Dynamic coherent focus OCT with depth-independent transversal resolution,” J. Mod. Opt. 46(3), 541–553 (1999).
[Crossref]

J. of Neuroscience (1)

T. Bolmont, A. Bouwens, C. Pache, M. Dimitrov, C. Berclaz, M. Villiger, B. M. Wegenast-Braun, T. Lasser, and P. C. Fraering, “Label-free imaging of cerebral β-amyloidosis with extended-focus optical coherence microscopy,” J. of Neuroscience 32(42), 14538–14556 (2012).
[Crossref]

J. Opt. Soc. Am. (1)

J. Opt. Soc. Am. A (4)

Nat. Biotech. (1)

J. G. Fujimoto, “Optical coherence tomography for ultrahigh resolution in vivo imaging,” Nat. Biotech. 21(11), 1361–1367 (2003).
[Crossref]

Nat. Med. (1)

W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, “Ultrahigh-resolution ophthalmic optical coherence tomography,” Nat. Med. 7(4), 502–507 (2001).
[Crossref] [PubMed]

Nat. Photonics (2)

A. Ahmad, N. D. Shemonski, S. G. Adie, H.-S. Kim, W.-M. W. Hwu, P. S. Carney, and S. A. Boppart, “Real-time in vivo computed optical interferometric tomography,” Nat. Photonics 7(6), 444–448 (2013).
[Crossref] [PubMed]

N. D. Shemonski, F. A. South, Y.-Z. Liu, S. G. Adie, P. S. Carney, and S. A. Boppart, “Computational high-resolution optical imaging of the living human retina,” Nat. Photonics 9, 440–443 (2015).
[Crossref]

Nat. Phys. (1)

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Interferometric synthetic aperture microscopy,” Nat. Phys. 3, 129–134 (2007).
[Crossref] [PubMed]

Opt. Express (15)

B. H. Park, M. C. Pierce, B. Cense, S.-H. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, “Real-time fiber-based multi-functional spectral-domain domain optical coherence tomography at 1.3 μm,” Opt. Express 13(11), 3931–3944 (2005).
[Crossref] [PubMed]

Y. Yasuno, J.-I. Sugisaka, Y. Sando, Y. Nakamura, S. Makita, M. Itoh, and T. Yatagai, “Non-iterative numerical method for laterally superresolving Fourier domain optical coherence tomography,” Opt. Express 14(3), 1006–1020 (2006).
[Crossref] [PubMed]

C. Blatter, B. Grajciar, C. M. Eigenwillig, W. Wieser, B. R. Biedermann, R. Huber, and R. A. Leitgeb, “Extended focus high-speed swept source OCT with self-reconstructive illumination,” Opt. Express 19(13), 12141–12155 (2011).
[Crossref] [PubMed]

J. Lee, V. Srinivasan, H. Radhakrishnan, and D. A. Boas, “Motion correction for phase-resolved dynamic optical coherence tomography imaging of rodent cerebral cortex,” Opt. Express 19(22), 21258–21270 (2011).
[Crossref] [PubMed]

L. Yu, J. Zhang, J. Su, Q. Wang, S. Guo, and Z. Chen, “Improved lateral resolution in optical coherence tomography by digital focusing using two-dimensional numerical diffraction method,” Opt. Express 15(12), 7634–7641 (2007).
[Crossref] [PubMed]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Real-time interferometric synthetic aperture microscopy,” Opt. Express 16(4), 2555–2569 (2008).
[Crossref] [PubMed]

A. D. Aguirre, J. Sawinski, S.-W. Huang, C. Zhou, W. Denk, and J. G. Fujimoto, “High speed optical coherence microscopy with autofocus adjustment and a miniaturized endoscopic imaging probe,” Opt. Express 18(5), 4222–4239 (2010).
[Crossref] [PubMed]

A. Kumar, W. Drexler, and R. A. Leitgeb, “Numerical focusing methods for full field OCT: a comparison based on a common signal model,” Opt. Express 22(13), 16061–16078 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part I): Stability requirements,” Opt. Express 22(16), 19183–19197 (2014).
[Crossref] [PubMed]

N. D. Shemonski, S. G. Adie, Y.-Z. Liu, F. A. South, P. S. Carney, and S. A. Boppart, “Stability in computed optical interferometric tomography (Part II): in vivo stability assessment,” Opt. Express 22(16), 19314–19326 (2014).
[Crossref] [PubMed]

J. Xing, J. Kim, and H. Yoo, “Design and fabrication of an optical probe with a phase filter for extended depth of focus,” Opt. Express 24(2), 1037–1044 (2016).
[Crossref] [PubMed]

C. Pache, N. L. Bocchio, A. Bouwens, M. Villiger, C. Berclaz, J. Goulley, M. I. Gibson, C. Santschi, and T. Lasser, “Fast three-dimensional imaging of gold nanoparticles in living cells with photothermal optical lock-in Optical Coherence Microscopy,” Opt. Express 20(19), 21385–21399 (2012).
[Crossref] [PubMed]

J. Jang, J. Lim, H. Yu, H. Choi, J. Ha, J.-H. Park, W.-Y. Oh, W. Jang, SD. Lee, and YK. Park, “Complex wavefront shaping for optimal depth-selective focusing in optical coherence tomography,” Opt. Express 21(3), 2890–2902 (2013).
[Crossref] [PubMed]

J. Mo, M. de Groot, and J. F. de Boer, “Focus-extension by depth-encoded synthetic aperture in Optical Coherence Tomography,” Opt. Express 21(8), 10048–10061 (2013).
[Crossref] [PubMed]

A. Kumar, W. Drexler, and R. A. Leitgeb, “Subaperture correlation based digital adaptive optics for full field optical coherence tomography,” Opt. Express 21(9), 10850–10566 (2013).
[Crossref] [PubMed]

Opt. Lett. (7)

Phys. in Med. and Biol. (1)

B. A. Standish, K. K. C. Lee, A. Mariampillai, N. R. Munce, M. K. K. Leung, V. X. D. Yang, and I. A. Vitkin, “In vivo endoscopic multi-beam optical coherence tomography,” Phys. in Med. and Biol. 55, 615–622 (2010).
[Crossref]

Proc. Natl. Acad. Sci. U.S.A. (1)

S. G. Adie, B. W. Graf, A. Ahmad, P. S. Carney, and S. A. Boppart, “Computational adaptive optics for broadband optical interferometric tomography of biological tissue,” Proc. Natl. Acad. Sci. U.S.A. 109(19), 7175–7180 (2012).
[Crossref] [PubMed]

Reports on Progress in Physics (1)

A. F. Fercher, W. Drexler, C. K. Hitzenberger, and T. Lasser, “Optical coherence tomography,” Reports on Progress in Physics 66, 239–303 (2003).
[Crossref]

Sci. Rep. (2)

M. Sison, S. Chakrabortty, J. Extermann, A. Nahas, P. J. Marchand, A. Lopez, T. Weil, and T. Lasser, “3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics,” Sci. Rep. 7, 43275 (2017).
[Crossref] [PubMed]

C. Berclaz, C. Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton, and T. Lasser, “Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers,” Sci. Rep. 5, 10385 (2015).
[Crossref] [PubMed]

Science (1)

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, “Optical Coherence Tomography,” Science 254(5035), 1178–1181 (1991).
[Crossref] [PubMed]

Other (2)

M. Gu, Advanced Optical Imaging Theory (Springer, 2000).
[Crossref]

T. S. Ralston, D. L. Marks, P. S. Carney, and S. A. Boppart, “Phase Stability Technique for Inverse Scattering in Optical Coherence Tomography,” in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, (IEEE, 2006), pp. 578–581.

Cited By

OSA participates in Crossref's Cited-By Linking service. Citing articles from OSA journals and other participating publishers are listed here.

Alert me when this article is cited.


Figures (8)

Fig. 2
Fig. 2

Resampling curves derived from the CTFs for Gaussian and Bessel illuminations. CTF for (left) Gaussian illumination and detection modes, and (right) Bessel illumination and Gaussian detection modes. A xISAM resampling curve (yellow) extracted from the center of mass of the CTF for each lateral frequency is shown.

Fig. 3
Fig. 3

xISAM processing steps. The processing is the same as in ISAM, but with the resampling grid obtained from the CTF as shown in Fig. 2. It consists of a phase correction procedure to ensure phase stability, followed by a coordinate change from z to z′ to place the focal plane at z′ = 0. The 3D signal is then Fourier transformed to obtain the Fourier domain OCM signal. The amplitude of the whole signal and the phase of a single out-of-focus scatterer is shown. The crucial step is the xISAM resampling using the grid extracted from the CTF. Finally, a 3D inverse Fourier transform and coordinate change retrieve the defocus-corrected tomogram.

Fig. 4
Fig. 4

xISAM simulations on OCM data. (a) Simulated OCM tomogram from a Gaussian-Gaussian configuration, with point scatterers aligned along the optical axis. (b) Phase profile associated with the out-of-focus scatterer indicated by the red arrow in (a). (c) xISAM reconstructed tomogram. (d) Phase profile as in (b). (e) Energy-normalized line profiles through the scatterers indicated by the colored lines in (a) and (b), showing an almost perfect recovery of the focal-plane resolution. The data is displayed in linear scale.

Fig. 5
Fig. 5

xISAM simulations on xfOCM data. xISAM proof-of-concept with a simulated xfOCM tomogram of point scatterers, similarly to Fig. 4. (a) Unprocessed and (b) xISAM reconstructed data, respectively. (c) and (d) Associated phase profile through an out-of-focus scatterer. (e) Energy-normalized line profiles through the indicated scatterers. The xISAM reconstruction leads to a clear reduction of the energy in the side lobes and an increase of the central peak.

Fig. 6
Fig. 6

OCM and xfOCM tomograms of polystyrene beads, and their corresponding reconstruction. The three first rows show en face images at various depths, while the last row shows maximum projections along the 256 B-scans. The different depths are indicated by the yellow lines in the maximum projections. All scale bars indicate 20 μm. The data is displayed in logarithmic scale with a range covering 20 dB for the en face views and 35 dB for the maximum projections.

Fig. 7
Fig. 7

Profiles through the tomograms of Fig. 6. (a), (b), (d) and (e) Line profiles across different beads at various depths, in excellent agreement with the simulated data (Figs. 45). Insets: en face views of the beads before and after reconstruction. (c) and (f) Metrics to evaluate image quality over depth in the four cases. The metrics consists in the sum of the highest 20 pixels at each depth z and shows the benefit of xfOCM and its xISAM reconstruction compared to both OCM unprocessed and processed data.

Fig. 8
Fig. 8

Slice of mandarin imaged with OCM and xfOCM and processed with xISAM. En face planes and maximum projections in the x-direction of the OCM and xfOCM tomograms are displayed with their respective xISAM reconstruction. Zoomed views of the areas indicated by a white rectangle are also shown. The signal range spans 25 dB for the en face views and 35 dB for the maximum projections. Scale bars in all directions correspond to 50 μm.

Equations (2)

Equations on this page are rendered with MathJax. Learn more.

q z = 4 k 2 q x 2 q y 2 = 4 k 2 q r 2 ,
S ( x , y , k ) = h ( x x , y y , z , k ) η ( x , y , z ) d x d y d z .

Metrics