Abstract

A hybrid system of holographic tomography, which utilizes rotation of a sample and two-directional, off-axis illumination is proposed. The applied type of illumination brings two major benefits. First, it offers theoretical potential for the resolution improvement with respect to conventional tomography. Second, it enables effective, numerical compensation of the defocus error, which is achieved with an accurate, noise-immune autofocusing. Hence, the main practical obstacle of hybrid tomography is removed and its high-resolution potential is put into practice. The utility of the proposed concept is experimentally demonstrated with the tomographic measurement of a photonic crystal fiber.

© 2017 Optical Society of America

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References

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    [Crossref]

2017 (6)

2016 (6)

W. Krauze, P. Makowski, M. Kujawińska, and A. Kuś, “Generalized total variation iterative constraint strategy in limited angle optical diffraction tomography,” Opt. Express 24(5), 4924–4936 (2016).
[Crossref]

G. Dardikman, M. Habaza, L. Waller, and N. T. Shaked, “Video-rate processing in tomographic phase microscopy of biological cells using CUDA,” Opt. Express 24(11), 11839–11854 (2016).
[Crossref] [PubMed]

J. Kostencka, T. Kozacki, A. Kuś, B. Kemper, and M. Kujawińska, “Holographic tomography with scanning of illumination: space-domain reconstruction for spatially invariant accuracy,” Biomed. Opt. Express 7(10), 4086–4101 (2016).
[Crossref] [PubMed]

J. Martinez-Carranza, K. Falaggis, and T. Kozacki, “Enhanced lateral resolution for phase retrieval based on the transport of intensity equation with tilted illumination,” Proc. SPIE 9718, 97180H (2016).

C. Ding and Z. Tan, “Improved longitudinal resolution in tomographic diffractive microscopy with an ellipsoidal mirror,” J. Microsc. 262(1), 33–39 (2016).
[Crossref] [PubMed]

B. Vinoth, Y. C. Lin, X. J. Lai, and C. J. Cheng, “Resolution enhancement in digital holographic microscopy and tomography system,” Asian J. Phys. 2, 501–510 (2016).

2015 (5)

2014 (5)

M. Dudek, M. Kujawińska, V. Parat, G. Baethge, A. Michalska, B. Dahmani, and H. Ottevaere, “Tomographic and numerical studies of polymer bridges between two optical fibers for telecommunication applications,” Opt. Eng. 53(1), 016113 (2014).
[Crossref]

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

J. Kostencka, T. Kozacki, M. Dudek, and M. Kujawińska, “Noise suppressed optical diffraction tomography with autofocus correction,” Opt. Express 22(5), 5731–5745 (2014).
[Crossref] [PubMed]

K. Liżewski, S. Tomczewski, T. Kozacki, and J. Kostencka, “High-precision topography measurement through accurate in-focus plane detection with hybrid digital holographic microscope and white light interferometer module,” Appl. Opt. 53(11), 2446–2454 (2014).
[Crossref] [PubMed]

P. Memmolo, M. Paturzo, B. Javidi, P. A. Netti, and P. Ferraro, “Refocusing criterion via sparsity measurements in digital holography,” Opt. Lett. 39(16), 4719–4722 (2014).
[Crossref] [PubMed]

2013 (4)

K. Falaggis, T. Kozacki, and M. Kujawinska, “Computation of highly off-axis diffracted fields using the band-limited angular spectrum method with suppressed Gibbs related artifacts,” Appl. Opt. 52(14), 3288–3297 (2013).
[Crossref] [PubMed]

K. Liżewski, T. Kozacki, and J. Kostencka, “Digital holographic microscope for measurement of high gradient deep topography object based on superresolution concept,” Opt. Lett. 38(11), 1878–1880 (2013).
[Crossref] [PubMed]

K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, “High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography,” J. Biomed. Opt. 19(1), 011005 (2013).
[Crossref] [PubMed]

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

2012 (2)

2011 (3)

S. Vertu, J. Flugge, J.-J. Delaunay, and O. Haeberle, “Improved and isotropic resolution in tomographic diffractive microscopy combining sample and illumination rotation,” Cent. Eur. J. Phys. 9, 969–974 (2011).

P. Langehanenberg, G. von Bally, and B. Kemper, “Autofocusing in digital holographic microscopy,” 3D Research 2(1), 11 (2011).
[Crossref]

L. Granero, Z. Zalevsky, and V. Micó, “Single-exposure two-dimensional superresolution in digital holography using a vertical cavity surface-emitting laser source array,” Opt. Lett. 36(7), 1149–1151 (2011).
[Crossref] [PubMed]

2010 (2)

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

2009 (2)

Y. Jeon and C. K. Hong, “Rotation error correction by numerical focus adjustment in tomographic phase microscopy,” Opt. Eng. 48(10), 105801 (2009).
[Crossref]

S. S. Kou and C. J. R. Sheppard, “Image formation in holographic tomography: high-aperture imaging conditions,” Appl. Opt. 48(34), H168–H175 (2009).
[Crossref] [PubMed]

2007 (2)

2005 (1)

2004 (1)

2001 (1)

1998 (1)

1989 (1)

J. Gillespie and R. A. King, “The use of self-entropy as a focus measure in digital holography,” Pattern Recognit. Lett. 9(1), 19–25 (1989).
[Crossref]

1982 (1)

1969 (1)

E. Wolf, “Three-dimensional structure determination of semi-transparent objects from holographic data,” Opt. Commun. 1(4), 153–156 (1969).
[Crossref]

Babacan, S. D.

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

Bachim, B. L.

Baer, G.

C. Pruss, G. Baer, J. Schindler, and W. Osten, “Measuring aspheres quickly: tilted wave interferometry,” Opt. Eng. 56(11), 111713 (2017).
[Crossref]

Baethge, G.

M. Dudek, M. Kujawińska, V. Parat, G. Baethge, A. Michalska, B. Dahmani, and H. Ottevaere, “Tomographic and numerical studies of polymer bridges between two optical fibers for telecommunication applications,” Opt. Eng. 53(1), 016113 (2014).
[Crossref]

Bailleul, J.

Boss, D.

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

Buczynski, R.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Buzniak, J.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Cai, L.

Carney, P. S.

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

Chen, B.

Chen, H. C.

Cheng, C. J.

Y. C. Lin, H. C. Chen, H. Y. Tu, C. Y. Liu, and C. J. Cheng, “Optically driven full-angle sample rotation for tomographic imaging in digital holographic microscopy,” Opt. Lett. 42(7), 1321–1324 (2017).
[Crossref] [PubMed]

B. Vinoth, Y. C. Lin, X. J. Lai, and C. J. Cheng, “Resolution enhancement in digital holographic microscopy and tomography system,” Asian J. Phys. 2, 501–510 (2016).

Chowdhury, S.

Cotte, Y.

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

Dahmani, B.

M. Dudek, M. Kujawińska, V. Parat, G. Baethge, A. Michalska, B. Dahmani, and H. Ottevaere, “Tomographic and numerical studies of polymer bridges between two optical fibers for telecommunication applications,” Opt. Eng. 53(1), 016113 (2014).
[Crossref]

Dan, D.

Dao, M.

K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, “High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography,” J. Biomed. Opt. 19(1), 011005 (2013).
[Crossref] [PubMed]

Dardikman, G.

Dasari, R. R.

K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, “High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography,” J. Biomed. Opt. 19(1), 011005 (2013).
[Crossref] [PubMed]

Davis, C. S.

Debailleul, M.

Delaunay, J.-J.

S. Vertu, J. Flugge, J.-J. Delaunay, and O. Haeberle, “Improved and isotropic resolution in tomographic diffractive microscopy combining sample and illumination rotation,” Cent. Eur. J. Phys. 9, 969–974 (2011).

Depeursinge, C.

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

M. Fatih Toy, J. Kühn, S. Richard, J. Parent, M. Egli, and C. Depeursinge, “Accelerated autofocusing of off-axis holograms using critical sampling,” Opt. Lett. 37(24), 5094–5096 (2012).
[Crossref] [PubMed]

Diez-Silva, M.

K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, “High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography,” J. Biomed. Opt. 19(1), 011005 (2013).
[Crossref] [PubMed]

Ding, C.

C. Ding and Z. Tan, “Improved longitudinal resolution in tomographic diffractive microscopy with an ellipsoidal mirror,” J. Microsc. 262(1), 33–39 (2016).
[Crossref] [PubMed]

Dudek, M.

M. Dudek, M. Kujawińska, V. Parat, G. Baethge, A. Michalska, B. Dahmani, and H. Ottevaere, “Tomographic and numerical studies of polymer bridges between two optical fibers for telecommunication applications,” Opt. Eng. 53(1), 016113 (2014).
[Crossref]

J. Kostencka, T. Kozacki, M. Dudek, and M. Kujawińska, “Noise suppressed optical diffraction tomography with autofocus correction,” Opt. Express 22(5), 5731–5745 (2014).
[Crossref] [PubMed]

Ecoffet, C.

Egli, M.

Eldridge, W. J.

Falaggis, K.

J. Martinez-Carranza, K. Falaggis, and T. Kozacki, “Enhanced lateral resolution for phase retrieval based on the transport of intensity equation with tilted illumination,” Proc. SPIE 9718, 97180H (2016).

K. Falaggis, T. Kozacki, and M. Kujawinska, “Computation of highly off-axis diffracted fields using the band-limited angular spectrum method with suppressed Gibbs related artifacts,” Appl. Opt. 52(14), 3288–3297 (2013).
[Crossref] [PubMed]

Fatih Toy, M.

Ferraro, P.

Filipkowski, A.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Flugge, J.

S. Vertu, J. Flugge, J.-J. Delaunay, and O. Haeberle, “Improved and isotropic resolution in tomographic diffractive microscopy combining sample and illumination rotation,” Cent. Eur. J. Phys. 9, 969–974 (2011).

Franczyk, M.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Gao, P.

Gaylord, T. K.

Gilboa, B.

Gillespie, J.

J. Gillespie and R. A. King, “The use of self-entropy as a focus measure in digital holography,” Pattern Recognit. Lett. 9(1), 19–25 (1989).
[Crossref]

Goddard, L. L.

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

Gorski, W.

Granero, L.

Guo, R.

Habaza, M.

Haeberle, O.

S. Vertu, J. Flugge, J.-J. Delaunay, and O. Haeberle, “Improved and isotropic resolution in tomographic diffractive microscopy combining sample and illumination rotation,” Cent. Eur. J. Phys. 9, 969–974 (2011).

Haeberlé, O.

Harasny, K.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Hong, C. K.

Y. Jeon and C. K. Hong, “Rotation error correction by numerical focus adjustment in tomographic phase microscopy,” Opt. Eng. 48(10), 105801 (2009).
[Crossref]

Houkal, M.

Hu, Q.

Ina, H.

Isikman, S. O.

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

Izatt, J.

Jang, S.

S. Lee, H. Park, K. Kim, Y. Sohn, S. Jang, and Y. Park, “Refractive index tomograms and dynamic membrane fluctuations of red blood cells from patients with diabetes mellitus,” Sci. Rep. 7(1), 1039 (2017).
[Crossref] [PubMed]

Javidi, B.

Jeon, Y.

Y. Jeon and C. K. Hong, “Rotation error correction by numerical focus adjustment in tomographic phase microscopy,” Opt. Eng. 48(10), 105801 (2009).
[Crossref]

Jourdain, P.

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

Kanka, M.

Kemper, B.

Kim, G.

Kim, K.

K. Lee, K. Kim, G. Kim, S. Shin, and Y. Park, “Time-multiplexed structured illumination using a DMD for optical diffraction tomography,” Opt. Lett. 42(5), 999–1002 (2017).
[Crossref] [PubMed]

S. Lee, H. Park, K. Kim, Y. Sohn, S. Jang, and Y. Park, “Refractive index tomograms and dynamic membrane fluctuations of red blood cells from patients with diabetes mellitus,” Sci. Rep. 7(1), 1039 (2017).
[Crossref] [PubMed]

K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, “High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography,” J. Biomed. Opt. 19(1), 011005 (2013).
[Crossref] [PubMed]

Kim, T.

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

King, R. A.

J. Gillespie and R. A. King, “The use of self-entropy as a focus measure in digital holography,” Pattern Recognit. Lett. 9(1), 19–25 (1989).
[Crossref]

Klimczak, M.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Kobayashi, S.

Kociszewski, L.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Kostencka, J.

Kou, S. S.

Kozacki, T.

J. Martinez-Carranza, K. Falaggis, and T. Kozacki, “Enhanced lateral resolution for phase retrieval based on the transport of intensity equation with tilted illumination,” Proc. SPIE 9718, 97180H (2016).

J. Kostencka, T. Kozacki, A. Kuś, B. Kemper, and M. Kujawińska, “Holographic tomography with scanning of illumination: space-domain reconstruction for spatially invariant accuracy,” Biomed. Opt. Express 7(10), 4086–4101 (2016).
[Crossref] [PubMed]

J. Kostencka and T. Kozacki, “Off-axis illumination in object-rotation diffraction tomography for enhanced alignment and resolution,” Proc. SPIE 9525, 95250M (2015).

J. Kostencka, T. Kozacki, A. Kuś, and M. Kujawińska, “Accurate approach to capillary-supported optical diffraction tomography,” Opt. Express 23(6), 7908–7923 (2015).
[Crossref] [PubMed]

K. Liżewski, S. Tomczewski, T. Kozacki, and J. Kostencka, “High-precision topography measurement through accurate in-focus plane detection with hybrid digital holographic microscope and white light interferometer module,” Appl. Opt. 53(11), 2446–2454 (2014).
[Crossref] [PubMed]

J. Kostencka, T. Kozacki, M. Dudek, and M. Kujawińska, “Noise suppressed optical diffraction tomography with autofocus correction,” Opt. Express 22(5), 5731–5745 (2014).
[Crossref] [PubMed]

K. Liżewski, T. Kozacki, and J. Kostencka, “Digital holographic microscope for measurement of high gradient deep topography object based on superresolution concept,” Opt. Lett. 38(11), 1878–1880 (2013).
[Crossref] [PubMed]

K. Falaggis, T. Kozacki, and M. Kujawinska, “Computation of highly off-axis diffracted fields using the band-limited angular spectrum method with suppressed Gibbs related artifacts,” Appl. Opt. 52(14), 3288–3297 (2013).
[Crossref] [PubMed]

Krauze, W.

Kühn, J.

Kujawa, I.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Kujawinska, M.

Kus, A.

Lai, X. J.

B. Vinoth, Y. C. Lin, X. J. Lai, and C. J. Cheng, “Resolution enhancement in digital holographic microscopy and tomography system,” Asian J. Phys. 2, 501–510 (2016).

Lambert, J.

Langehanenberg, P.

P. Langehanenberg, G. von Bally, and B. Kemper, “Autofocusing in digital holographic microscopy,” 3D Research 2(1), 11 (2011).
[Crossref]

Lee, K.

Lee, S.

S. Lee, H. Park, K. Kim, Y. Sohn, S. Jang, and Y. Park, “Refractive index tomograms and dynamic membrane fluctuations of red blood cells from patients with diabetes mellitus,” Sci. Rep. 7(1), 1039 (2017).
[Crossref] [PubMed]

Lei, M.

Li, S.

Z. Pan, Z. Liang, S. Li, J. Weng, and J. Zhong, “Microtomography of the polarization-maintaining fiber by digital holography,” Opt. Fiber Technol. 22, 46–51 (2015).
[Crossref]

Li, W.

Liang, Z.

Z. Pan, Z. Liang, S. Li, J. Weng, and J. Zhong, “Microtomography of the polarization-maintaining fiber by digital holography,” Opt. Fiber Technol. 22, 46–51 (2015).
[Crossref]

Liebling, M.

Lin, Y. C.

Y. C. Lin, H. C. Chen, H. Y. Tu, C. Y. Liu, and C. J. Cheng, “Optically driven full-angle sample rotation for tomographic imaging in digital holographic microscopy,” Opt. Lett. 42(7), 1321–1324 (2017).
[Crossref] [PubMed]

B. Vinoth, Y. C. Lin, X. J. Lai, and C. J. Cheng, “Resolution enhancement in digital holographic microscopy and tomography system,” Asian J. Phys. 2, 501–510 (2016).

Liu, C. Y.

Liu, H.

Lizewski, K.

Loomis, N. C.

Ma, B.

Magistretti, P.

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

Makowski, P.

Marquet, P.

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

Martinez-Carranza, J.

J. Martinez-Carranza, K. Falaggis, and T. Kozacki, “Enhanced lateral resolution for phase retrieval based on the transport of intensity equation with tilted illumination,” Proc. SPIE 9718, 97180H (2016).

Memmolo, P.

Mettler, S. C.

Michalska, A.

M. Dudek, M. Kujawińska, V. Parat, G. Baethge, A. Michalska, B. Dahmani, and H. Ottevaere, “Tomographic and numerical studies of polymer bridges between two optical fibers for telecommunication applications,” Opt. Eng. 53(1), 016113 (2014).
[Crossref]

Micó, V.

Min, J.

Mir, M.

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

Mudanyali, O.

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

Netti, P. A.

Osten, W.

C. Pruss, G. Baer, J. Schindler, and W. Osten, “Measuring aspheres quickly: tilted wave interferometry,” Opt. Eng. 56(11), 111713 (2017).
[Crossref]

W. Gorski and W. Osten, “Tomographic imaging of photonic crystal fibers,” Opt. Lett. 32(14), 1977–1979 (2007).
[Crossref] [PubMed]

Ottevaere, H.

M. Dudek, M. Kujawińska, V. Parat, G. Baethge, A. Michalska, B. Dahmani, and H. Ottevaere, “Tomographic and numerical studies of polymer bridges between two optical fibers for telecommunication applications,” Opt. Eng. 53(1), 016113 (2014).
[Crossref]

Ozcan, A.

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

Oztoprak, C.

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

Pan, Z.

Z. Pan, Z. Liang, S. Li, J. Weng, and J. Zhong, “Microtomography of the polarization-maintaining fiber by digital holography,” Opt. Fiber Technol. 22, 46–51 (2015).
[Crossref]

Parat, V.

M. Dudek, M. Kujawińska, V. Parat, G. Baethge, A. Michalska, B. Dahmani, and H. Ottevaere, “Tomographic and numerical studies of polymer bridges between two optical fibers for telecommunication applications,” Opt. Eng. 53(1), 016113 (2014).
[Crossref]

Parent, J.

Park, H.

S. Lee, H. Park, K. Kim, Y. Sohn, S. Jang, and Y. Park, “Refractive index tomograms and dynamic membrane fluctuations of red blood cells from patients with diabetes mellitus,” Sci. Rep. 7(1), 1039 (2017).
[Crossref] [PubMed]

Park, Y.

S. Lee, H. Park, K. Kim, Y. Sohn, S. Jang, and Y. Park, “Refractive index tomograms and dynamic membrane fluctuations of red blood cells from patients with diabetes mellitus,” Sci. Rep. 7(1), 1039 (2017).
[Crossref] [PubMed]

K. Lee, K. Kim, G. Kim, S. Shin, and Y. Park, “Time-multiplexed structured illumination using a DMD for optical diffraction tomography,” Opt. Lett. 42(5), 999–1002 (2017).
[Crossref] [PubMed]

K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, “High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography,” J. Biomed. Opt. 19(1), 011005 (2013).
[Crossref] [PubMed]

Paturzo, M.

Pavillon, N.

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

Popescu, G.

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

Pruss, C.

C. Pruss, G. Baer, J. Schindler, and W. Osten, “Measuring aspheres quickly: tilted wave interferometry,” Opt. Eng. 56(11), 111713 (2017).
[Crossref]

Pysz, D.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Richard, S.

Riesenberg, R.

Roichman, Y.

Schindler, J.

C. Pruss, G. Baer, J. Schindler, and W. Osten, “Measuring aspheres quickly: tilted wave interferometry,” Opt. Eng. 56(11), 111713 (2017).
[Crossref]

Sencan, I.

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

Shaked, N. T.

Sheppard, C. J. R.

Shin, S.

Simon, B.

Sohn, Y.

S. Lee, H. Park, K. Kim, Y. Sohn, S. Jang, and Y. Park, “Refractive index tomograms and dynamic membrane fluctuations of red blood cells from patients with diabetes mellitus,” Sci. Rep. 7(1), 1039 (2017).
[Crossref] [PubMed]

Soppera, O.

Spangenberg, A.

Stamnes, J. J.

Stepien, R.

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Takeda, M.

Tan, Z.

C. Ding and Z. Tan, “Improved longitudinal resolution in tomographic diffractive microscopy with an ellipsoidal mirror,” J. Microsc. 262(1), 33–39 (2016).
[Crossref] [PubMed]

Tomczewski, S.

Toy, F.

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

Tseng, D.

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

Tu, H. Y.

Unser, M.

Vertu, S.

S. Vertu, J. Flugge, J.-J. Delaunay, and O. Haeberle, “Improved and isotropic resolution in tomographic diffractive microscopy combining sample and illumination rotation,” Cent. Eur. J. Phys. 9, 969–974 (2011).

Vinoth, B.

B. Vinoth, Y. C. Lin, X. J. Lai, and C. J. Cheng, “Resolution enhancement in digital holographic microscopy and tomography system,” Asian J. Phys. 2, 501–510 (2016).

von Bally, G.

P. Langehanenberg, G. von Bally, and B. Kemper, “Autofocusing in digital holographic microscopy,” 3D Research 2(1), 11 (2011).
[Crossref]

Waller, L.

Wax, A.

Weng, J.

Z. Pan, Z. Liang, S. Li, J. Weng, and J. Zhong, “Microtomography of the polarization-maintaining fiber by digital holography,” Opt. Fiber Technol. 22, 46–51 (2015).
[Crossref]

Wolf, E.

E. Wolf, “Three-dimensional structure determination of semi-transparent objects from holographic data,” Opt. Commun. 1(4), 153–156 (1969).
[Crossref]

Yaglidere, O.

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

Yan, S.

Yao, B.

Ye, T.

Yoon, H.

K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, “High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography,” J. Biomed. Opt. 19(1), 011005 (2013).
[Crossref] [PubMed]

Yu, L.

Zalevsky, Z.

Zheng, J.

Zhong, J.

Z. Pan, Z. Liang, S. Li, J. Weng, and J. Zhong, “Microtomography of the polarization-maintaining fiber by digital holography,” Opt. Fiber Technol. 22, 46–51 (2015).
[Crossref]

Zhou, R.

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

3D Research (1)

P. Langehanenberg, G. von Bally, and B. Kemper, “Autofocusing in digital holographic microscopy,” 3D Research 2(1), 11 (2011).
[Crossref]

Appl. Opt. (4)

Asian J. Phys. (1)

B. Vinoth, Y. C. Lin, X. J. Lai, and C. J. Cheng, “Resolution enhancement in digital holographic microscopy and tomography system,” Asian J. Phys. 2, 501–510 (2016).

Biomed. Opt. Express (1)

Bull. Pol. Acad. Sci. Tech. Sci. (1)

D. Pysz, I. Kujawa, R. Stępień, M. Klimczak, A. Filipkowski, M. Franczyk, L. Kociszewski, J. Buźniak, K. Haraśny, and R. Buczyński, “Stack and draw fabrication of soft glass microstructured fiber optics,” Bull. Pol. Acad. Sci. Tech. Sci. 62(4), 667–683 (2014).
[Crossref]

Cent. Eur. J. Phys. (1)

S. Vertu, J. Flugge, J.-J. Delaunay, and O. Haeberle, “Improved and isotropic resolution in tomographic diffractive microscopy combining sample and illumination rotation,” Cent. Eur. J. Phys. 9, 969–974 (2011).

J. Biomed. Opt. (1)

K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, “High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography,” J. Biomed. Opt. 19(1), 011005 (2013).
[Crossref] [PubMed]

J. Microsc. (1)

C. Ding and Z. Tan, “Improved longitudinal resolution in tomographic diffractive microscopy with an ellipsoidal mirror,” J. Microsc. 262(1), 33–39 (2016).
[Crossref] [PubMed]

J. Opt. Soc. Am. (1)

J. Opt. Soc. Am. A (3)

Lab Chip (1)

D. Tseng, O. Mudanyali, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lensfree microscopy on a cellphone,” Lab Chip 10(14), 1787–1792 (2010).
[Crossref] [PubMed]

Nat. Photonics (2)

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 10, 1787–1792 (2010).

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss, P. Magistretti, P. Marquet, and C. Depeursinge, “Marker-free phase nanoscopy,” Nat. Photonics 7(5), 418 (2013).
[Crossref]

Opt. Commun. (1)

E. Wolf, “Three-dimensional structure determination of semi-transparent objects from holographic data,” Opt. Commun. 1(4), 153–156 (1969).
[Crossref]

Opt. Eng. (3)

M. Dudek, M. Kujawińska, V. Parat, G. Baethge, A. Michalska, B. Dahmani, and H. Ottevaere, “Tomographic and numerical studies of polymer bridges between two optical fibers for telecommunication applications,” Opt. Eng. 53(1), 016113 (2014).
[Crossref]

Y. Jeon and C. K. Hong, “Rotation error correction by numerical focus adjustment in tomographic phase microscopy,” Opt. Eng. 48(10), 105801 (2009).
[Crossref]

C. Pruss, G. Baer, J. Schindler, and W. Osten, “Measuring aspheres quickly: tilted wave interferometry,” Opt. Eng. 56(11), 111713 (2017).
[Crossref]

Opt. Express (4)

Opt. Fiber Technol. (1)

Z. Pan, Z. Liang, S. Li, J. Weng, and J. Zhong, “Microtomography of the polarization-maintaining fiber by digital holography,” Opt. Fiber Technol. 22, 46–51 (2015).
[Crossref]

Opt. Lett. (11)

W. Gorski and W. Osten, “Tomographic imaging of photonic crystal fibers,” Opt. Lett. 32(14), 1977–1979 (2007).
[Crossref] [PubMed]

L. Granero, Z. Zalevsky, and V. Micó, “Single-exposure two-dimensional superresolution in digital holography using a vertical cavity surface-emitting laser source array,” Opt. Lett. 36(7), 1149–1151 (2011).
[Crossref] [PubMed]

K. Liżewski, T. Kozacki, and J. Kostencka, “Digital holographic microscope for measurement of high gradient deep topography object based on superresolution concept,” Opt. Lett. 38(11), 1878–1880 (2013).
[Crossref] [PubMed]

M. Kanka and R. Riesenberg, “Lens-free inline holographic microscopy with numerical correction of layers with different refractive index,” Opt. Lett. 40(5), 752–755 (2015).
[Crossref] [PubMed]

P. Gao, B. Yao, J. Min, R. Guo, B. Ma, J. Zheng, M. Lei, S. Yan, D. Dan, and T. Ye, “Autofocusing of digital holographic microscopy based on off-axis illuminations,” Opt. Lett. 37(17), 3630–3632 (2012).
[Crossref] [PubMed]

B. L. Bachim, T. K. Gaylord, and S. C. Mettler, “Refractive-index profiling of azimuthally asymmetric optical fibers by microinterferometric optical phase tomography,” Opt. Lett. 30(10), 1126–1128 (2005).
[Crossref] [PubMed]

Y. C. Lin, H. C. Chen, H. Y. Tu, C. Y. Liu, and C. J. Cheng, “Optically driven full-angle sample rotation for tomographic imaging in digital holographic microscopy,” Opt. Lett. 42(7), 1321–1324 (2017).
[Crossref] [PubMed]

M. Habaza, B. Gilboa, Y. Roichman, and N. T. Shaked, “Tomographic phase microscopy with 180° rotation of live cells in suspension by holographic optical tweezers,” Opt. Lett. 40(8), 1881–1884 (2015).
[Crossref] [PubMed]

P. Memmolo, M. Paturzo, B. Javidi, P. A. Netti, and P. Ferraro, “Refocusing criterion via sparsity measurements in digital holography,” Opt. Lett. 39(16), 4719–4722 (2014).
[Crossref] [PubMed]

K. Lee, K. Kim, G. Kim, S. Shin, and Y. Park, “Time-multiplexed structured illumination using a DMD for optical diffraction tomography,” Opt. Lett. 42(5), 999–1002 (2017).
[Crossref] [PubMed]

M. Fatih Toy, J. Kühn, S. Richard, J. Parent, M. Egli, and C. Depeursinge, “Accelerated autofocusing of off-axis holograms using critical sampling,” Opt. Lett. 37(24), 5094–5096 (2012).
[Crossref] [PubMed]

Optica (2)

Pattern Recognit. Lett. (1)

J. Gillespie and R. A. King, “The use of self-entropy as a focus measure in digital holography,” Pattern Recognit. Lett. 9(1), 19–25 (1989).
[Crossref]

Proc. SPIE (2)

J. Martinez-Carranza, K. Falaggis, and T. Kozacki, “Enhanced lateral resolution for phase retrieval based on the transport of intensity equation with tilted illumination,” Proc. SPIE 9718, 97180H (2016).

J. Kostencka and T. Kozacki, “Off-axis illumination in object-rotation diffraction tomography for enhanced alignment and resolution,” Proc. SPIE 9525, 95250M (2015).

Sci. Rep. (1)

S. Lee, H. Park, K. Kim, Y. Sohn, S. Jang, and Y. Park, “Refractive index tomograms and dynamic membrane fluctuations of red blood cells from patients with diabetes mellitus,” Sci. Rep. 7(1), 1039 (2017).
[Crossref] [PubMed]

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Figures (14)

Fig. 1
Fig. 1 The MI-ORC system with the object rotation and two-directional illumination.
Fig. 2
Fig. 2 Illustration of the Fourier diffraction theorem: (a) the object wave registration; (b) corresponding Ewald sphere in the object spectrum.
Fig. 3
Fig. 3 Transfer functions of (a) ISC, (b) ORC, (c) MI-ORC; (d) the Fx-Fz cross-sections.
Fig. 4
Fig. 4 The determination of the non-centric rotation error.
Fig. 5
Fig. 5 (a) The MI-ORC setup: L– laser, SP– spatial filter, C– collimator, BS– beam splitter, M – mirrors, G– diffraction grating, S– rotating sample in a cuvette, MO– microscope objective, BC– beam combiner, IL– imaging lens; (b) wave vectors of the object (red) and reference (green) beams incident at angles ± β and γ, respectively.
Fig. 6
Fig. 6 Spectra of holograms captured for sequential (a) and simultaneous (b) two-directional illumination; uθ, ± β, uREF – object and reference waves, * – complex conjugation; fILL, fREF – illumination and reference spatial frequencies; fNA – radius of the spectral area corresponding to NA.
Fig. 7
Fig. 7 Compensation of the wave aberration.
Fig. 8
Fig. 8 Compensation of defocusing with the MIA-autofocusing.
Fig. 9
Fig. 9 Focus curves obtained with various autofocusing approaches: AA (blue, dashed line); MIA (red, solid line) and MIA without aberration compensations (red, dotted line).
Fig. 10
Fig. 10 Fragments of the object beams at the in-focus locations determined with various autofocusing approaches: AA (a-c amplitudes, d-f phases); MIA (g-l); MIA without aberration compensation (m-s).
Fig. 11
Fig. 11 The results for ORC (a) fragment of an example hologram; (b) hologram spectrum, (c) reconstruction of the object spectrum with the DI algorithm; (d-f) reconstructed refractive index distribution (three zoom levels); (g) cross-section along dashed lines in Fig. 11(f).
Fig. 12
Fig. 12 The measurement results for the MI-ORC with sequential, two-directional illumination: (a) fragment an example hologram; (b) hologram spectrum, (c) reconstruction of the object spectrum with the DI algorithm; (d-f) reconstructed refractive index distribution (three zoom levels); (g) cross-section along the dashed lines in Fig. 12(f).
Fig. 13
Fig. 13 The measurement results for the MI-ORC with simultaneous, two-directional illumination: (a) fragment of an example hologram; (b) hologram spectrum, (c) reconstruction of the object spectrum with the DI algorithm; (d-f) reconstructed refractive index distribution (three zoom levels); (g) cross-section along the dashed lines in Fig. 13(f).
Fig. 14
Fig. 14 The refractive index reconstructions for MI-ORC with sequential, two-directional illumination obtained without: (a-d) the aberration correction; (e-h) the defocusing correction; (a-c, e-g) 2D maps of the refractive index reconstruction for various zoom levels; (d,h) cross-sections along the dashed lines in Fig. 14(c,g).

Tables (1)

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Table 1 The limits of the transferred spatial frequencies for three HT configurations (in the case of the ISC configuration, β denotes the maximum illumination angle).

Equations (4)

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u ^ c o r r = F T 1 { F T [ u ^ ] H } ,
H = exp { i k 0 ( L 1 [ λ ( f t f c ) ] 2 L n 0 2 [ λ ( f t f c ) ] 2 ) } ,
u ^ z = F T 1 { F T [ u ^ z = 0 ] exp ( i k 0 z n 0 2 [ λ ( f t f c ) ] 2 ) } .
R M S D ( z ) = ( φ θ , + β ( x , y ; z ) φ θ , - β ( x , y ; z ) ) 2 .

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