Abstract

Selective-plane illumination microscopy (SPIM) provides unparalleled advantages for the volumetric imaging of living organisms over extended times. However, the spatial configuration of a SPIM system often limits its compatibility with many widely used biological sample holders such as multi-well chambers and plates. To solve this problem, we developed a high numerical aperture (NA) open-top configuration that places both the excitation and detection objectives on the opposite of the sample coverglass. We carried out a theoretical calculation to analyze the structure of the system-induced aberrations. We then experimentally compensated the system aberrations using adaptive optics combined with static optical components, demonstrating near-diffraction-limited performance in imaging fluorescently labeled cells.

© 2017 Optical Society of America

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References

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  1. J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy,” Science 305, 1007–1009 (2004).
    [Crossref] [PubMed]
  2. L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
    [Crossref] [PubMed]
  3. S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
    [Crossref] [PubMed]
  4. Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
    [Crossref] [PubMed]
  5. B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
    [Crossref] [PubMed]
  6. T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
    [Crossref] [PubMed]
  7. M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
    [Crossref] [PubMed]
  8. P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
    [Crossref]
  9. R. McGorty, H. Liu, D. Kamiyama, Z. Dong, S. Guo, and B. Huang, “Open-top selective plane illumination microscope for conventionally mounted specimens,” Opt. Express 23, 16142 (2015).
    [Crossref] [PubMed]
  10. R. H. Freeman and J. E. Pearson, “Deformable mirrors for all seasons and reasons,” Appl. Opt. 21, 580–588 (1982).
    [Crossref] [PubMed]
  11. A. M. Weiner, “Femtosecond pulse shaping using spatial light modulators,” Rev. Sci. Instrum. 71, 1929–1960 (2000).
    [Crossref]
  12. M. J. Booth, “Adaptive optics in microscopy,” Philos. Trans. A Math. Phys. Eng. Sci. 365, 2829–2843 (2007).
    [Crossref] [PubMed]
  13. M. J. Booth, M. A. A. Neil, R. Juškaitis, and T. Wilson, “Adaptive aberration correction in a confocal microscope,” Proc. Nat. Acad. Sci. U.S.A. 99, 5788–5792 (2002).
    [Crossref] [PubMed]
  14. D. Débarre, T. Vieille, and E. Beaurepaire, “Simple characterisation of a deformable mirror inside a high numerical aperture microscope using phase diversity,” J. Microscopy 244, 136–143 (2011).
    [Crossref]
  15. P. Kner, J. Sedat, D. Agard, and Z. Kam, “High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing,” J. microscopy 237, 136–147 (2010).
    [Crossref]
  16. N. Ji, D. E. Milkie, and E. Betzig, “Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues,” Nat. Methods 7, 141–147 (2010).
    [Crossref]
  17. D. Débarre, E. J. Botcherby, T. Watanabe, S. Srinivas, M. J. Booth, and T. Wilson, “Image-based adaptive optics for two-photon microscopy,” Opt. Lett. 34, 2495 (2009).
    [Crossref] [PubMed]
  18. I. Izeddin, M. El Beheiry, J. Andilla, D. Ciepielewski, X. Darzacq, and M. Dahan, “PSF shaping using adaptive optics for three-dimensional single-molecule super-resolution imaging and tracking,” Opt. Express 20, 4957 (2012).
    [Crossref] [PubMed]
  19. D. Burke, B. Patton, F. Huang, J. Bewersdorf, and M. J. Booth, “Adaptive optics correction of specimen-induced aberrations in single-molecule switching microscopy,” Optica 2, 177–185 (2015).
    [Crossref]
  20. C. Bourgenot, C. D. Saunter, J. M. Taylor, J. M. Girkin, and G. D. Love, “3d adaptive optics in a light sheet microscope,” Opt. Express 20, 13252–13261 (2012).
    [Crossref] [PubMed]
  21. D. Turaga and T. E. Holy, “Aberrations and their correction in light-sheet microscopy: a low-dimensional parametrization,” Biomed. Opt. Express 4, 1654–1661 (2013).
    [Crossref] [PubMed]
  22. C. Dunsby, “Optically sectioned imaging by oblique plane microscopy,” Opt. Express 16, 20306–20316 (2008).
    [Crossref] [PubMed]
  23. M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
    [Crossref]
  24. B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase retrieval for high-numerical-aperture optical systems,” Opt. Lett. 28, 801–803 (2003).
    [Crossref] [PubMed]
  25. B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase-retrieved pupil functions in wide-field fluorescence microscopy,” J. Microscopy 216, 32–48 (2004).
    [Crossref]
  26. R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9, 755–763 (2012).
    [Crossref] [PubMed]

2016 (3)

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

2015 (4)

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

D. Burke, B. Patton, F. Huang, J. Bewersdorf, and M. J. Booth, “Adaptive optics correction of specimen-induced aberrations in single-molecule switching microscopy,” Optica 2, 177–185 (2015).
[Crossref]

R. McGorty, H. Liu, D. Kamiyama, Z. Dong, S. Guo, and B. Huang, “Open-top selective plane illumination microscope for conventionally mounted specimens,” Opt. Express 23, 16142 (2015).
[Crossref] [PubMed]

2014 (1)

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

2013 (1)

2012 (3)

2011 (3)

D. Débarre, T. Vieille, and E. Beaurepaire, “Simple characterisation of a deformable mirror inside a high numerical aperture microscope using phase diversity,” J. Microscopy 244, 136–143 (2011).
[Crossref]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

2010 (2)

P. Kner, J. Sedat, D. Agard, and Z. Kam, “High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing,” J. microscopy 237, 136–147 (2010).
[Crossref]

N. Ji, D. E. Milkie, and E. Betzig, “Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues,” Nat. Methods 7, 141–147 (2010).
[Crossref]

2009 (1)

2008 (1)

2007 (1)

M. J. Booth, “Adaptive optics in microscopy,” Philos. Trans. A Math. Phys. Eng. Sci. 365, 2829–2843 (2007).
[Crossref] [PubMed]

2004 (2)

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase-retrieved pupil functions in wide-field fluorescence microscopy,” J. Microscopy 216, 32–48 (2004).
[Crossref]

J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy,” Science 305, 1007–1009 (2004).
[Crossref] [PubMed]

2003 (1)

2002 (1)

M. J. Booth, M. A. A. Neil, R. Juškaitis, and T. Wilson, “Adaptive aberration correction in a confocal microscope,” Proc. Nat. Acad. Sci. U.S.A. 99, 5788–5792 (2002).
[Crossref] [PubMed]

2000 (1)

A. M. Weiner, “Femtosecond pulse shaping using spatial light modulators,” Rev. Sci. Instrum. 71, 1929–1960 (2000).
[Crossref]

1982 (1)

Agard, D.

P. Kner, J. Sedat, D. Agard, and Z. Kam, “High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing,” J. microscopy 237, 136–147 (2010).
[Crossref]

Agard, D. A.

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase-retrieved pupil functions in wide-field fluorescence microscopy,” J. Microscopy 216, 32–48 (2004).
[Crossref]

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase retrieval for high-numerical-aperture optical systems,” Opt. Lett. 28, 801–803 (2003).
[Crossref] [PubMed]

Amat, F.

R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9, 755–763 (2012).
[Crossref] [PubMed]

Andilla, J.

Balazs, B.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Bao, Z.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Beaurepaire, E.

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

D. Débarre, T. Vieille, and E. Beaurepaire, “Simple characterisation of a deformable mirror inside a high numerical aperture microscope using phase diversity,” J. Microscopy 244, 136–143 (2011).
[Crossref]

Beheiry, M. El

Bembenek, J. N.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Bene, F. D.

J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy,” Science 305, 1007–1009 (2004).
[Crossref] [PubMed]

Betzig, E.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

N. Ji, D. E. Milkie, and E. Betzig, “Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues,” Nat. Methods 7, 141–147 (2010).
[Crossref]

Bewersdorf, J.

Böhme, R.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Booth, M. J.

Botcherby, E. J.

Bouchard, M. B.

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

Bourgenot, C.

Bruno, R. M.

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

Burke, D.

Candelier, R.

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

Chen, B. C.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Chhetri, R. K.

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

Christensen, R.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Ciepielewski, D.

Coleman, M.

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

Colón-Ramos, D.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Dahan, M.

Darzacq, X.

Davidson, M. W.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

de Medeiros, G.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Débarre, D.

D. Débarre, T. Vieille, and E. Beaurepaire, “Simple characterisation of a deformable mirror inside a high numerical aperture microscope using phase diversity,” J. Microscopy 244, 136–143 (2011).
[Crossref]

D. Débarre, E. J. Botcherby, T. Watanabe, S. Srinivas, M. J. Booth, and T. Wilson, “Image-based adaptive optics for two-photon microscopy,” Opt. Lett. 34, 2495 (2009).
[Crossref] [PubMed]

Debrégeas, G.

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

Dong, Z.

Du, Z.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Dunsby, C.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

C. Dunsby, “Optically sectioned imaging by oblique plane microscopy,” Opt. Express 16, 20306–20316 (2008).
[Crossref] [PubMed]

Ellenberg, J.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

English, B. P.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Freeman, R. H.

Fritz-Laylin, L.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Galbraith, C. G.

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

Galbraith, J. A.

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

Gao, L.

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

Ghitani, A.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Girkin, J. M.

Gordon, F.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

Grill, S. W.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Grueber, W. B.

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

Gunther, S.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Guo, S.

Gustafsson, M. G. L.

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase-retrieved pupil functions in wide-field fluorescence microscopy,” J. Microscopy 216, 32–48 (2004).
[Crossref]

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase retrieval for high-numerical-aperture optical systems,” Opt. Lett. 28, 801–803 (2003).
[Crossref] [PubMed]

Hammer, J. A.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Hanser, B. M.

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase-retrieved pupil functions in wide-field fluorescence microscopy,” J. Microscopy 216, 32–48 (2004).
[Crossref]

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase retrieval for high-numerical-aperture optical systems,” Opt. Lett. 28, 801–803 (2003).
[Crossref] [PubMed]

Harding, S. E.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

Hiiragi, T.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Hillman, E. M. C.

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

Holy, T. E.

Huang, B.

Huang, F.

Hufnagel, L.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Huisken, J.

J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy,” Science 305, 1007–1009 (2004).
[Crossref] [PubMed]

Izeddin, I.

Janetopoulos, C.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Ji, N.

N. Ji, D. E. Milkie, and E. Betzig, “Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues,” Nat. Methods 7, 141–147 (2010).
[Crossref]

Juškaitis, R.

M. J. Booth, M. A. A. Neil, R. Juškaitis, and T. Wilson, “Adaptive aberration correction in a confocal microscope,” Proc. Nat. Acad. Sci. U.S.A. 99, 5788–5792 (2002).
[Crossref] [PubMed]

Kam, Z.

P. Kner, J. Sedat, D. Agard, and Z. Kam, “High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing,” J. microscopy 237, 136–147 (2010).
[Crossref]

Kamiyama, D.

Keller, P. J.

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9, 755–763 (2012).
[Crossref] [PubMed]

Khairy, K.

R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9, 755–763 (2012).
[Crossref] [PubMed]

Kiehart, D. P.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Kner, P.

P. Kner, J. Sedat, D. Agard, and Z. Kam, “High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing,” J. microscopy 237, 136–147 (2010).
[Crossref]

Kruglik, S. G.

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

Krzic, U.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Kumar, S.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

Lacefield, C.

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

Legant, W. R.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Lemon, W. C.

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

Lippincott-Schwartz, J.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Liu, H.

Liu, Z.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Love, G. D.

Lyon, A. R.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

MacLeod, K. T.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

Mahou, P.

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

Maioli, V.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

Mann, R. S.

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

McGorty, R.

Mendes, C. S.

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

Milkie, D. E.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

N. Ji, D. E. Milkie, and E. Betzig, “Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues,” Nat. Methods 7, 141–147 (2010).
[Crossref]

Mimori-Kiyosue, Y.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Mitchell, D. M.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Mullins, R. D.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Myers, E. W.

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

Neil, M. A. A.

M. J. Booth, M. A. A. Neil, R. Juškaitis, and T. Wilson, “Adaptive aberration correction in a confocal microscope,” Proc. Nat. Acad. Sci. U.S.A. 99, 5788–5792 (2002).
[Crossref] [PubMed]

Norlin, N.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Patton, B.

Pearson, J. E.

Planchon, T. A.

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

Reichmann, J.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Reymann, A.-C.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Ritter, A. T.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Romero, D. P.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Rondeau, G.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Rowlands, C.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

Royer, L. A.

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

Santella, A.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Saunter, C. D.

Sedat, J.

P. Kner, J. Sedat, D. Agard, and Z. Kam, “High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing,” J. microscopy 237, 136–147 (2010).
[Crossref]

Sedat, J. W.

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase-retrieved pupil functions in wide-field fluorescence microscopy,” J. Microscopy 216, 32–48 (2004).
[Crossref]

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase retrieval for high-numerical-aperture optical systems,” Opt. Lett. 28, 801–803 (2003).
[Crossref] [PubMed]

Seydoux, G.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Shao, L.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Shroff, H.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Sikkel, M. B.

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

Sintes, J.-M.

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

Srinivas, S.

Stelzer, E. H. K.

J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy,” Science 305, 1007–1009 (2004).
[Crossref] [PubMed]

Strnad, P.

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

Supatto, W.

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

Swoger, J.

J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy,” Science 305, 1007–1009 (2004).
[Crossref] [PubMed]

Taylor, J. M.

Tomer, R.

R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9, 755–763 (2012).
[Crossref] [PubMed]

Tulu, U. S.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Turaga, D.

Vieille, T.

D. Débarre, T. Vieille, and E. Beaurepaire, “Simple characterisation of a deformable mirror inside a high numerical aperture microscope using phase diversity,” J. Microscopy 244, 136–143 (2011).
[Crossref]

Voleti, V.

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

Wan, Y.

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

Wang, J. T.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Wang, K.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Watanabe, T.

Weiner, A. M.

A. M. Weiner, “Femtosecond pulse shaping using spatial light modulators,” Rev. Sci. Instrum. 71, 1929–1960 (2000).
[Crossref]

Wilson, T.

D. Débarre, E. J. Botcherby, T. Watanabe, S. Srinivas, M. J. Booth, and T. Wilson, “Image-based adaptive optics for two-photon microscopy,” Opt. Lett. 34, 2495 (2009).
[Crossref] [PubMed]

M. J. Booth, M. A. A. Neil, R. Juškaitis, and T. Wilson, “Adaptive aberration correction in a confocal microscope,” Proc. Nat. Acad. Sci. U.S.A. 99, 5788–5792 (2002).
[Crossref] [PubMed]

Wittbrodt, J.

J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy,” Science 305, 1007–1009 (2004).
[Crossref] [PubMed]

Wolf, S.

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

Wu, X. S.

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

Wu, Y.

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Appl. Opt. (1)

Biomed. Opt. Express (1)

J. Biophotonics (1)

M. B. Sikkel, S. Kumar, V. Maioli, C. Rowlands, F. Gordon, S. E. Harding, A. R. Lyon, K. T. MacLeod, and C. Dunsby, “High speed sCMOS-based oblique plane microscopy applied to the study of calcium dynamics in cardiac myocytes,” J. Biophotonics 9, 311–323 (2016).
[Crossref]

J. Microscopy (2)

B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, “Phase-retrieved pupil functions in wide-field fluorescence microscopy,” J. Microscopy 216, 32–48 (2004).
[Crossref]

D. Débarre, T. Vieille, and E. Beaurepaire, “Simple characterisation of a deformable mirror inside a high numerical aperture microscope using phase diversity,” J. Microscopy 244, 136–143 (2011).
[Crossref]

P. Kner, J. Sedat, D. Agard, and Z. Kam, “High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing,” J. microscopy 237, 136–147 (2010).
[Crossref]

Nat. Biotechnol. (1)

L. A. Royer, W. C. Lemon, R. K. Chhetri, Y. Wan, M. Coleman, E. W. Myers, and P. J. Keller, “Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms,” Nat. Biotechnol. 34, 1267–1278 (2016).
[Crossref] [PubMed]

Nat. Methods (5)

S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S. G. Kruglik, J.-M. Sintes, E. Beaurepaire, and R. Candelier, “Whole-brain functional imaging with two-photon light-sheet microscopy,” Nat. Methods 12, 379–380 (2015).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8, 417–423 (2011).
[Crossref] [PubMed]

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13, 139–142 (2016).
[Crossref]

N. Ji, D. E. Milkie, and E. Betzig, “Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues,” Nat. Methods 7, 141–147 (2010).
[Crossref]

R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9, 755–763 (2012).
[Crossref] [PubMed]

Nat. Photonics (1)

M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms,” Nat. Photonics 9, 113–119 (2015).
[Crossref] [PubMed]

Opt. Express (4)

Opt. Lett. (2)

Optica (1)

Philos. Trans. A Math. Phys. Eng. Sci. (1)

M. J. Booth, “Adaptive optics in microscopy,” Philos. Trans. A Math. Phys. Eng. Sci. 365, 2829–2843 (2007).
[Crossref] [PubMed]

Proc. Nat. Acad. Sci. U.S.A. (2)

M. J. Booth, M. A. A. Neil, R. Juškaitis, and T. Wilson, “Adaptive aberration correction in a confocal microscope,” Proc. Nat. Acad. Sci. U.S.A. 99, 5788–5792 (2002).
[Crossref] [PubMed]

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Nat. Acad. Sci. U.S.A. 108, 17708–17713 (2011).
[Crossref] [PubMed]

Rev. Sci. Instrum. (1)

A. M. Weiner, “Femtosecond pulse shaping using spatial light modulators,” Rev. Sci. Instrum. 71, 1929–1960 (2000).
[Crossref]

Science (2)

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A.-C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution,” Science 346, 1257998 (2014).
[Crossref] [PubMed]

J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy,” Science 305, 1007–1009 (2004).
[Crossref] [PubMed]

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Figures (8)

Fig. 1
Fig. 1

(a) The layout of the excitation and imaging paths of our previously described open-top SPIM. The sample sits on top of a cover-glass bottomed holder which is carried by a motorized stage. To allow for the water-dipping imaging objective and to partially mitigate the effects of imaging across a tilted coverslip, a water-holding triangular prism is placed directly underneath the sample holder. Note that the optical layout used for collecting the images and data shown here is modified to more easily understand and to test methods for compensating the aberrations associated with imaging across a tilted coverslip. Additionally, while one could compensate for aberrations in both the imaging and excitation objectives we choose to focus only on the aberrations in the imaging path and therefore use a lower NA air objective for excitation. (b) The geometry of the imaging system. The ray of incidence (green line) crosses the upper surface of a coverslip; the normal vector n ^ of the coverslip plane is tilted by angle γ from z-axis in the x-z plane. The ray is refracted at the interface, travels inside the coverslip(red line), exits from the bottom interface and propagates in the original direction. Without the coverslip, the ray is supposed to propagate along the dashed line.

Fig. 2
Fig. 2

(a) Optical aberrations on the pupil plane of a NA=1.0 objective under 0°, 15°, 35°, 45° coverslip tilt. The linear non-aberrational components (piston, tip/tilt) are subtracted from the phase difference calculated with Eq. (20). The white dashed circle represents 0.8 NA. At 45° coverslip tilt, the pupil function is cropped to NA = 0.8 because of objective geometric constraint. The left column shows the absolute aberration in each case, and the right column shows the relative aberration with respect to that in the zero-tilt case in order to remove the spherical aberrations resulting from imaging across a glass coverslip. Color bar unit: wavelengths. (b) Cross sections of the absolute (left column) and relative (right column) aberrations. Unit: wavelength.

Fig. 3
Fig. 3

Total transmittance of rays within the collection cone at γ = 0°, 15°, 35°, 45° degrees, calculated for NA = 0.8 (white, dashed circle) and 1.0 (full circle). The cross sections along the x-direction are shown in the bottom row.

Fig. 4
Fig. 4

(a) Experimental setup. (b) Results of simulating our optical design with Zemax. We simulate a point-source situated behind a coverglass tilted around 40° to the optical axis. The first few optical elements of a 40× water dipping objective are shown. Light rays are shown emerging from the point source and being refracted at the water-glass and glass-water interfaces. The simulated point spread function is shown. We incorporated a cylindrical lens downstream from the objective in this simulation to counter some of the aberrations.

Fig. 5
Fig. 5

(a) The final pupil function retrieved after 7 iterations. In each iteration, the retrieved pupil function is reversed and discretized into 12×12 segments, then scaled up and applied to the 140-segment deformable mirror. The overall correction pattern added on the deformable mirror is shown in (b). (c) With the correction in (b) applied to the deformable mirror, a majority of the system aberration is eliminated except at the rightmost edge of the pupil plane as shown in this retrieved pupil function. (d) The coefficients of 5–22 zernike components in the retrieved system aberration (a).

Fig. 6
Fig. 6

The PSF of our microscope without and with aberration corrections from the deformable mirror, all displayed with log scaling. All scale bars are 1 μm. In (a)–(c), only the cylindrical lens placed in the imaging path corrects some of the aberrations. The deformable mirror is flat. In (d)–(f), a pattern is placed on the deformable mirror found through iteratively finding the pupil function and adjusting the deformable mirror. In (g)–(i), a sheet of excitation light coming from an orthogonally placed objective is used rather than using wide-field illumination as in the previous cases. (a), (d), and (g) display slices of the PSF in the x-y plane. (b), (e), and (h) display slices in the z-y plane. (c), (f), and (i) display slices in the z-x plane. (j), (k): Cross sections of the PSFs in x, y, and z directions before and after the aberration correction.

Fig. 7
Fig. 7

HEK cells with fluorescently labeled nuclear lamina were imaged with our SPIM using a cylindrical lens and a deformable mirror to reduce aberrations. (a) Upper left: an x-y frame of the acquired stack. Upper right and bottom: y-z and x-z view of the slices along the dashed lines. The displayed volume covers 22 μm along the z-axis. (b) Upper panel: the intensity profiles along the horizontal and vertical dashed lines, respectively. Lower panel: the z-profile along the cross section.

Fig. 8
Fig. 8

Images of a Drosophila embryo before and after a preconfigured correction pattern was applied on the deformable mirror. Two 8-μm line cuts (1 and 2) are made across the same structures in both cases, and their intensity profiles are shown in (b).

Equations (25)

Equations on this page are rendered with MathJax. Learn more.

NA = n 1 sin α ,
n ^ = sin γ e ^ x + cos γ e ^ z ,
k ^ = sin θ cos φ e ^ x + sin θ sin φ e ^ y + cos θ e ^ z ,
sin ϕ = | k ^ × n ^ | ,
cos ϕ = | k ^ n ^ | .
s ^ = ( k ^ × n ^ ) / | k ^ × n ^ | = c s c ϕ ( k ^ × n ^ ) ,
p ^ = s ^ × k ^ .
n 1 sin ϕ = n 2 sin ϕ ,
k ^ = cos β k ^ sin β p ^ .
( r r 0 ) n ^ = 0 ,
x sin γ + z cos γ = 0 .
( r r d ) n ^ = 0 ,
r n ^ = d .
x x 0 k x = y y 0 k y , y y 0 k y = z z 0 k z ,
M r e = b ,
M = [ k z 0 k x 0 k z k y sin γ 0 cos γ ] ,
OPL c = n 2 | r e r 0 | = n 2 | r e | .
Δ l = n 1 sin θ | r e ( z e z 0 ) k ^ / k z | .
OPL r = OPL c + Δ l ,
OPL i = n 1 | ( z e z 0 ) k ^ / k z | .
Δ Φ = OPL r OPL i λ .
R s = | n 1 cos ϕ n 2 cos ϕ n 1 cos ϕ + n 2 cos ϕ | 2 ,
R p = | n 1 cos ϕ n 2 cos ϕ n 1 cos ϕ + n 2 cos ϕ | 2 ,
P t ( ϕ ) = P s ( 1 R s ) 2 + P p ( 1 R p ) 2 = P 0 [ 1 ( R s + R p ) + R s 2 + R p 2 2 ] ,
T c = 1 ( R s + R p ) + R s 2 + R p 2 2 .

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