Light-sheet microscopy with digital Fourier analysis measures transport properties over large field-of-view

D. Germain, M. Leocmach, and T. Gibaud, “Differential dynamic microscopy to characterize Brownian motion and bacteria motility,” Am. J. Phys. 84(3), 202–210 (2016).
[Crossref]

F. Giavazzi, C. Haro-Pérez, and R. Cerbino, “Simultaneous characterization of rotational and translational diffusion of optically anisotropic particles by optical microscopy,” J. Phys. Condens. Matter 28(19), 195201 (2016).
[Crossref] [PubMed]

T. Sentjabrskaja, E. Zaccarelli, C. De Michele, F. Sciortino, P. Tartaglia, T. Voigtmann, S. U. Egelhaaf, and M. Laurati, “Anomalous dynamics of intruders in a crowded environment of mobile obstacles,” Nat. Commun. 7, 11133 (2016).
[Crossref] [PubMed]

A. V. Bayles, T. M. Squires, and M. E. Helgeson, “Dark-field differential dynamic microscopy,” Soft Matter 12(8), 2440–2452 (2016).
[Crossref] [PubMed]

C. D. Chapman, S. Gorczyca, and R. M. Robertson-Anderson, “Crowding induces complex ergodic diffusion and dynamic elongation of large DNA molecules,” Biophys. J. 108(5), 1220–1228 (2015).
[Crossref] [PubMed]

J. D. C. Jacob, K. He, S. T. Retterer, R. Krishnamoorti, and J. C. Conrad, “Diffusive dynamics of nanoparticles in ultra-confined media,” Soft Matter 11(38), 7515–7524 (2015).
[Crossref] [PubMed]

M. S. Safari, M. A. Vorontsova, R. Poling-Skutvik, P. G. Vekilov, and J. C. Conrad, “Differential dynamic microscopy of weakly scattering and polydisperse protein-rich clusters,” Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 92(4), 042712 (2015).
[Crossref] [PubMed]

C. Manzo and M. F. Garcia-Parajo, “A review of progress in single particle tracking: from methods to biophysical insights,” Rep. Prog. Phys. 78(12), 124601 (2015).
[Crossref] [PubMed]

E. H. K. Stelzer, “Light-sheet fluorescence microscopy for quantitative biology,” Nat. Methods 12(1), 23–26 (2015).
[Crossref] [PubMed]

L. Gao, “Extend the field of view of selective plan illumination microscopy by tiling the excitation light sheet,” Opt. Express 23(5), 6102–6111 (2015).
[Crossref] [PubMed]

R. McGorty, H. Liu, D. Kamiyama, Z. Dong, S. Guo, and B. Huang, “Open-top selective plane illumination microscope for conventionally mounted specimens,” Opt. Express 23(12), 16142–16153 (2015).
[Crossref] [PubMed]

K. M. Dean and R. Fiolka, “Uniform and scalable light-sheets generated by extended focusing,” Opt. Express 22(21), 26141–26152 (2014).
[Crossref] [PubMed]

A. D. Edelstein, M. A. Tsuchida, N. Amodaj, H. Pinkard, R. D. Vale, and N. Stuurman, “Advanced methods of microscope control using μManager software,” J. Biol. Methods 1(2), 10 (2014).
[Crossref] [PubMed]

F. Giavazzi and R. Cerbino, “Digital Fourier microscopy for soft matter dynamics,” J. Opt. 16(8), 083001 (2014).
[Crossref]

K. He, F. Babaye Khorasani, S. T. Retterer, D. K. Thomas, J. C. Conrad, and R. Krishnamoorti, “Diffusive dynamics of nanoparticles in arrays of nanoposts,” ACS Nano 7(6), 5122–5130 (2013).
[Crossref] [PubMed]

P. G. Pitrone, J. Schindelin, L. Stuyvenberg, S. Preibisch, M. Weber, K. W. Eliceiri, J. Huisken, and P. Tomancak, “OpenSPIM: an open-access light-sheet microscopy platform,” Nat. Methods 10(7), 598–599 (2013).
[Crossref] [PubMed]

J. Huisken, “Slicing embryos gently with laser light sheets,” BioEssays 34(5), 406–411 (2012).
[Crossref] [PubMed]

R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9(7), 755–763 (2012).
[Crossref] [PubMed]

R. Wang, L. Lei, Y. Wang, A. J. Levine, and G. Popescu, “Dispersion-relation fluorescence spectroscopy,” Phys. Rev. Lett. 109(18), 188104 (2012).
[Crossref] [PubMed]

P. J. Lu, F. Giavazzi, T. E. Angelini, E. Zaccarelli, F. Jargstorff, A. B. Schofield, J. N. Wilking, M. B. Romanowsky, D. A. Weitz, and R. Cerbino, “Characterizing concentrated, multiply scattering, and actively driven fluorescent systems with confocal differential dynamic microscopy,” Phys. Rev. Lett. 108(21), 218103 (2012).
[Crossref] [PubMed]

K. He, M. Spannuth, J. C. Conrad, and R. Krishnamoorti, “Diffusive dynamics of nanoparticles in aqueous dispersions,” Soft Matter 8(47), 11933–11938 (2012).
[Crossref]

M. Reufer, V. A. Martinez, P. Schurtenberger, and W. C. K. Poon, “Differential dynamic microscopy for anisotropic colloidal dynamics,” Langmuir 28(10), 4618–4624 (2012).
[Crossref] [PubMed]

L. G. Wilson, V. A. Martinez, J. Schwarz-Linek, J. Tailleur, G. Bryant, P. N. Pusey, and W. C. K. Poon, “Differential dynamic microscopy of bacterial motility,” Phys. Rev. Lett. 106(1), 018101 (2011).
[Crossref] [PubMed]

T. V. Truong, W. Supatto, D. S. Koos, J. M. Choi, and S. E. Fraser, “Deep and fast live imaging with two-photon scanned light-sheet microscopy,” Nat. Methods 8(9), 757–760 (2011).
[Crossref] [PubMed]

T. Kalwarczyk, N. Ziȩbacz, A. Bielejewska, E. Zaboklicka, K. Koynov, J. Szymański, A. Wilk, A. Patkowski, J. Gapiński, H.-J. Butt, and R. Hołyst, “Comparative analysis of viscosity of complex liquids and cytoplasm of mammalian cells at the nanoscale,” Nano Lett. 11(5), 2157–2163 (2011).
[Crossref] [PubMed]

J. Capoulade, M. Wachsmuth, L. Hufnagel, and M. Knop, “Quantitative fluorescence imaging of protein diffusion and interaction in living cells,” Nat. Biotechnol. 29(9), 835–839 (2011).
[Crossref] [PubMed]

E. L. Elson, “Fluorescence correlation spectroscopy: past, present, future,” Biophys. J. 101(12), 2855–2870 (2011).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8(5), 417–423 (2011).
[Crossref] [PubMed]

T. Wohland, X. Shi, J. Sankaran, and E. H. K. Stelzer, “Single Plane Illumination Fluorescence Correlation Spectroscopy (SPIM-FCS) probes inhomogeneous three-dimensional environments,” Opt. Express 18(10), 10627–10641 (2010).
[Crossref] [PubMed]

J. G. Ritter, R. Veith, A. Veenendaal, J. P. Siebrasse, and U. Kubitscheck, “Light sheet microscopy for single molecule tracking in living tissue,” PLoS One 5(7), e11639 (2010).
[Crossref] [PubMed]

Z. Zhang, N. Xu, D. T. N. Chen, P. Yunker, A. M. Alsayed, K. B. Aptowicz, P. Habdas, A. J. Liu, S. R. Nagel, and A. G. Yodh, “Thermal vestige of the zero-temperature jamming transition,” Nature 459(7244), 230–233 (2009).
[Crossref] [PubMed]

F. Giavazzi, D. Brogioli, V. Trappe, T. Bellini, and R. Cerbino, “Scattering information obtained by optical microscopy: differential dynamic microscopy and beyond,” Phys. Rev. E 80(3 Pt 1), 031403 (2009).
[Crossref] [PubMed]

Y. Gao and M. L. Kilfoil, “Accurate detection and complete tracking of large populations of features in three dimensions,” Opt. Express 17(6), 4685–4704 (2009).
[Crossref] [PubMed]

C. P. Brangwynne, G. H. Koenderink, F. C. MacKintosh, and D. A. Weitz, “Cytoplasmic diffusion: molecular motors mix it up,” J. Cell Biol. 183(4), 583–587 (2008).
[Crossref] [PubMed]

P. J. Keller, A. D. Schmidt, J. Wittbrodt, and E. H. K. Stelzer, “Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy,” Science 322(5904), 1065–1069 (2008).
[Crossref] [PubMed]

T. F. Holekamp, D. Turaga, and T. E. Holy, “Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy,” Neuron 57(5), 661–672 (2008).
[Crossref] [PubMed]

R. Cerbino and V. Trappe, “Differential dynamic microscopy: probing wave vector dependent dynamics with a microscope,” Phys. Rev. Lett. 100(18), 188102 (2008).
[Crossref] [PubMed]

F. Scheffold and R. Cerbino, “New trends in light scattering,” Curr. Opin. Colloid Interface Sci. 12(1), 50–57 (2007).
[Crossref]

J. Huisken and D. Y. R. Stainier, “Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM),” Opt. Lett. 32(17), 2608–2610 (2007).
[Crossref] [PubMed]

R. M. Robertson, S. Laib, and D. E. Smith, “Diffusion of isolated DNA molecules: dependence on length and topology,” Proc. Natl. Acad. Sci. U.S.A. 103(19), 7310–7314 (2006).
[Crossref] [PubMed]

D. L. Kolin, D. Ronis, and P. W. Wiseman, “k-Space image correlation spectroscopy: a method for accurate transport measurements independent of fluorophore photophysics,” Biophys. J. 91(8), 3061–3075 (2006).
[Crossref] [PubMed]

F. Croccolo, D. Brogioli, A. Vailati, M. Giglio, and D. S. Cannell, “Use of dynamic Schlieren interferometry to study fluctuations during free diffusion,” Appl. Opt. 45(10), 2166–2173 (2006).
[Crossref] [PubMed]

S. Laib, R. M. Robertson, and D. E. Smith, “Preparation and characterization of a set of linear DNA molecules for polymer physics and rheology studies,” Macromolecules 39(12), 4115–4119 (2006).
[Crossref]

J. Huisken, J. Swoger, F. Del Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical sectioning deep inside live embryos by selective plane illumination microscopy,” Science 305(5686), 1007–1009 (2004).
[Crossref] [PubMed]

W. K. Kegel and A. Blaaderen, “Direct observation of dynamical heterogeneities in colloidal hard-sphere suspensions,” Science 287(5451), 290–293 (2000).
[Crossref] [PubMed]

T. G. Mason and D. A. Weitz, “Optical measurements of frequency-dependent linear viscoelastic moduli of complex fluids,” Phys. Rev. Lett. 74(7), 1250–1253 (1995).
[Crossref] [PubMed]

D. N. Petsev and N. D. Denkov, “Diffusion of charged colloidal particles at low volume fraction: Theoretical model and light scattering experiments,” J. Colloid Interface Sci. 149(2), 329–344 (1992).
[Crossref]

S. H. Chen and J. S. Huang, “Dynamic slowing-down and nonexponential decay of the density correlation function in dense microemulsions,” Phys. Rev. Lett. 55(18), 1888–1891 (1985).
[Crossref] [PubMed]

Z. Zhang, N. Xu, D. T. N. Chen, P. Yunker, A. M. Alsayed, K. B. Aptowicz, P. Habdas, A. J. Liu, S. R. Nagel, and A. G. Yodh, “Thermal vestige of the zero-temperature jamming transition,” Nature 459(7244), 230–233 (2009).
[Crossref] [PubMed]

R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9(7), 755–763 (2012).
[Crossref] [PubMed]

A. D. Edelstein, M. A. Tsuchida, N. Amodaj, H. Pinkard, R. D. Vale, and N. Stuurman, “Advanced methods of microscope control using μManager software,” J. Biol. Methods 1(2), 10 (2014).
[Crossref] [PubMed]

P. J. Lu, F. Giavazzi, T. E. Angelini, E. Zaccarelli, F. Jargstorff, A. B. Schofield, J. N. Wilking, M. B. Romanowsky, D. A. Weitz, and R. Cerbino, “Characterizing concentrated, multiply scattering, and actively driven fluorescent systems with confocal differential dynamic microscopy,” Phys. Rev. Lett. 108(21), 218103 (2012).
[Crossref] [PubMed]

Z. Zhang, N. Xu, D. T. N. Chen, P. Yunker, A. M. Alsayed, K. B. Aptowicz, P. Habdas, A. J. Liu, S. R. Nagel, and A. G. Yodh, “Thermal vestige of the zero-temperature jamming transition,” Nature 459(7244), 230–233 (2009).
[Crossref] [PubMed]

K. He, F. Babaye Khorasani, S. T. Retterer, D. K. Thomas, J. C. Conrad, and R. Krishnamoorti, “Diffusive dynamics of nanoparticles in arrays of nanoposts,” ACS Nano 7(6), 5122–5130 (2013).
[Crossref] [PubMed]

A. V. Bayles, T. M. Squires, and M. E. Helgeson, “Dark-field differential dynamic microscopy,” Soft Matter 12(8), 2440–2452 (2016).
[Crossref] [PubMed]

F. Giavazzi, D. Brogioli, V. Trappe, T. Bellini, and R. Cerbino, “Scattering information obtained by optical microscopy: differential dynamic microscopy and beyond,” Phys. Rev. E 80(3 Pt 1), 031403 (2009).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8(5), 417–423 (2011).
[Crossref] [PubMed]

T. Kalwarczyk, N. Ziȩbacz, A. Bielejewska, E. Zaboklicka, K. Koynov, J. Szymański, A. Wilk, A. Patkowski, J. Gapiński, H.-J. Butt, and R. Hołyst, “Comparative analysis of viscosity of complex liquids and cytoplasm of mammalian cells at the nanoscale,” Nano Lett. 11(5), 2157–2163 (2011).
[Crossref] [PubMed]

W. K. Kegel and A. Blaaderen, “Direct observation of dynamical heterogeneities in colloidal hard-sphere suspensions,” Science 287(5451), 290–293 (2000).
[Crossref] [PubMed]

C. P. Brangwynne, G. H. Koenderink, F. C. MacKintosh, and D. A. Weitz, “Cytoplasmic diffusion: molecular motors mix it up,” J. Cell Biol. 183(4), 583–587 (2008).
[Crossref] [PubMed]

F. Giavazzi, D. Brogioli, V. Trappe, T. Bellini, and R. Cerbino, “Scattering information obtained by optical microscopy: differential dynamic microscopy and beyond,” Phys. Rev. E 80(3 Pt 1), 031403 (2009).
[Crossref] [PubMed]

F. Croccolo, D. Brogioli, A. Vailati, M. Giglio, and D. S. Cannell, “Use of dynamic Schlieren interferometry to study fluctuations during free diffusion,” Appl. Opt. 45(10), 2166–2173 (2006).
[Crossref] [PubMed]

L. G. Wilson, V. A. Martinez, J. Schwarz-Linek, J. Tailleur, G. Bryant, P. N. Pusey, and W. C. K. Poon, “Differential dynamic microscopy of bacterial motility,” Phys. Rev. Lett. 106(1), 018101 (2011).
[Crossref] [PubMed]

T. Kalwarczyk, N. Ziȩbacz, A. Bielejewska, E. Zaboklicka, K. Koynov, J. Szymański, A. Wilk, A. Patkowski, J. Gapiński, H.-J. Butt, and R. Hołyst, “Comparative analysis of viscosity of complex liquids and cytoplasm of mammalian cells at the nanoscale,” Nano Lett. 11(5), 2157–2163 (2011).
[Crossref] [PubMed]

F. Croccolo, D. Brogioli, A. Vailati, M. Giglio, and D. S. Cannell, “Use of dynamic Schlieren interferometry to study fluctuations during free diffusion,” Appl. Opt. 45(10), 2166–2173 (2006).
[Crossref] [PubMed]

J. Capoulade, M. Wachsmuth, L. Hufnagel, and M. Knop, “Quantitative fluorescence imaging of protein diffusion and interaction in living cells,” Nat. Biotechnol. 29(9), 835–839 (2011).
[Crossref] [PubMed]

F. Giavazzi, C. Haro-Pérez, and R. Cerbino, “Simultaneous characterization of rotational and translational diffusion of optically anisotropic particles by optical microscopy,” J. Phys. Condens. Matter 28(19), 195201 (2016).
[Crossref] [PubMed]

F. Giavazzi and R. Cerbino, “Digital Fourier microscopy for soft matter dynamics,” J. Opt. 16(8), 083001 (2014).
[Crossref]

P. J. Lu, F. Giavazzi, T. E. Angelini, E. Zaccarelli, F. Jargstorff, A. B. Schofield, J. N. Wilking, M. B. Romanowsky, D. A. Weitz, and R. Cerbino, “Characterizing concentrated, multiply scattering, and actively driven fluorescent systems with confocal differential dynamic microscopy,” Phys. Rev. Lett. 108(21), 218103 (2012).
[Crossref] [PubMed]

F. Giavazzi, D. Brogioli, V. Trappe, T. Bellini, and R. Cerbino, “Scattering information obtained by optical microscopy: differential dynamic microscopy and beyond,” Phys. Rev. E 80(3 Pt 1), 031403 (2009).
[Crossref] [PubMed]

R. Cerbino and V. Trappe, “Differential dynamic microscopy: probing wave vector dependent dynamics with a microscope,” Phys. Rev. Lett. 100(18), 188102 (2008).
[Crossref] [PubMed]

F. Scheffold and R. Cerbino, “New trends in light scattering,” Curr. Opin. Colloid Interface Sci. 12(1), 50–57 (2007).
[Crossref]

C. D. Chapman, S. Gorczyca, and R. M. Robertson-Anderson, “Crowding induces complex ergodic diffusion and dynamic elongation of large DNA molecules,” Biophys. J. 108(5), 1220–1228 (2015).
[Crossref] [PubMed]

Z. Zhang, N. Xu, D. T. N. Chen, P. Yunker, A. M. Alsayed, K. B. Aptowicz, P. Habdas, A. J. Liu, S. R. Nagel, and A. G. Yodh, “Thermal vestige of the zero-temperature jamming transition,” Nature 459(7244), 230–233 (2009).
[Crossref] [PubMed]

S. H. Chen and J. S. Huang, “Dynamic slowing-down and nonexponential decay of the density correlation function in dense microemulsions,” Phys. Rev. Lett. 55(18), 1888–1891 (1985).
[Crossref] [PubMed]

T. V. Truong, W. Supatto, D. S. Koos, J. M. Choi, and S. E. Fraser, “Deep and fast live imaging with two-photon scanned light-sheet microscopy,” Nat. Methods 8(9), 757–760 (2011).
[Crossref] [PubMed]

M. S. Safari, M. A. Vorontsova, R. Poling-Skutvik, P. G. Vekilov, and J. C. Conrad, “Differential dynamic microscopy of weakly scattering and polydisperse protein-rich clusters,” Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 92(4), 042712 (2015).
[Crossref] [PubMed]

J. D. C. Jacob, K. He, S. T. Retterer, R. Krishnamoorti, and J. C. Conrad, “Diffusive dynamics of nanoparticles in ultra-confined media,” Soft Matter 11(38), 7515–7524 (2015).
[Crossref] [PubMed]

K. He, F. Babaye Khorasani, S. T. Retterer, D. K. Thomas, J. C. Conrad, and R. Krishnamoorti, “Diffusive dynamics of nanoparticles in arrays of nanoposts,” ACS Nano 7(6), 5122–5130 (2013).
[Crossref] [PubMed]

K. He, M. Spannuth, J. C. Conrad, and R. Krishnamoorti, “Diffusive dynamics of nanoparticles in aqueous dispersions,” Soft Matter 8(47), 11933–11938 (2012).
[Crossref]

F. Croccolo, D. Brogioli, A. Vailati, M. Giglio, and D. S. Cannell, “Use of dynamic Schlieren interferometry to study fluctuations during free diffusion,” Appl. Opt. 45(10), 2166–2173 (2006).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8(5), 417–423 (2011).
[Crossref] [PubMed]

T. Sentjabrskaja, E. Zaccarelli, C. De Michele, F. Sciortino, P. Tartaglia, T. Voigtmann, S. U. Egelhaaf, and M. Laurati, “Anomalous dynamics of intruders in a crowded environment of mobile obstacles,” Nat. Commun. 7, 11133 (2016).
[Crossref] [PubMed]

K. M. Dean and R. Fiolka, “Uniform and scalable light-sheets generated by extended focusing,” Opt. Express 22(21), 26141–26152 (2014).
[Crossref] [PubMed]

J. Huisken, J. Swoger, F. Del Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical sectioning deep inside live embryos by selective plane illumination microscopy,” Science 305(5686), 1007–1009 (2004).
[Crossref] [PubMed]

D. N. Petsev and N. D. Denkov, “Diffusion of charged colloidal particles at low volume fraction: Theoretical model and light scattering experiments,” J. Colloid Interface Sci. 149(2), 329–344 (1992).
[Crossref]

R. McGorty, H. Liu, D. Kamiyama, Z. Dong, S. Guo, and B. Huang, “Open-top selective plane illumination microscope for conventionally mounted specimens,” Opt. Express 23(12), 16142–16153 (2015).
[Crossref] [PubMed]

A. D. Edelstein, M. A. Tsuchida, N. Amodaj, H. Pinkard, R. D. Vale, and N. Stuurman, “Advanced methods of microscope control using μManager software,” J. Biol. Methods 1(2), 10 (2014).
[Crossref] [PubMed]

T. Sentjabrskaja, E. Zaccarelli, C. De Michele, F. Sciortino, P. Tartaglia, T. Voigtmann, S. U. Egelhaaf, and M. Laurati, “Anomalous dynamics of intruders in a crowded environment of mobile obstacles,” Nat. Commun. 7, 11133 (2016).
[Crossref] [PubMed]

P. G. Pitrone, J. Schindelin, L. Stuyvenberg, S. Preibisch, M. Weber, K. W. Eliceiri, J. Huisken, and P. Tomancak, “OpenSPIM: an open-access light-sheet microscopy platform,” Nat. Methods 10(7), 598–599 (2013).
[Crossref] [PubMed]

E. L. Elson, “Fluorescence correlation spectroscopy: past, present, future,” Biophys. J. 101(12), 2855–2870 (2011).
[Crossref] [PubMed]

K. M. Dean and R. Fiolka, “Uniform and scalable light-sheets generated by extended focusing,” Opt. Express 22(21), 26141–26152 (2014).
[Crossref] [PubMed]

T. V. Truong, W. Supatto, D. S. Koos, J. M. Choi, and S. E. Fraser, “Deep and fast live imaging with two-photon scanned light-sheet microscopy,” Nat. Methods 8(9), 757–760 (2011).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8(5), 417–423 (2011).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8(5), 417–423 (2011).
[Crossref] [PubMed]

L. Gao, “Extend the field of view of selective plan illumination microscopy by tiling the excitation light sheet,” Opt. Express 23(5), 6102–6111 (2015).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8(5), 417–423 (2011).
[Crossref] [PubMed]

Y. Gao and M. L. Kilfoil, “Accurate detection and complete tracking of large populations of features in three dimensions,” Opt. Express 17(6), 4685–4704 (2009).
[Crossref] [PubMed]

T. Kalwarczyk, N. Ziȩbacz, A. Bielejewska, E. Zaboklicka, K. Koynov, J. Szymański, A. Wilk, A. Patkowski, J. Gapiński, H.-J. Butt, and R. Hołyst, “Comparative analysis of viscosity of complex liquids and cytoplasm of mammalian cells at the nanoscale,” Nano Lett. 11(5), 2157–2163 (2011).
[Crossref] [PubMed]

C. Manzo and M. F. Garcia-Parajo, “A review of progress in single particle tracking: from methods to biophysical insights,” Rep. Prog. Phys. 78(12), 124601 (2015).
[Crossref] [PubMed]

D. Germain, M. Leocmach, and T. Gibaud, “Differential dynamic microscopy to characterize Brownian motion and bacteria motility,” Am. J. Phys. 84(3), 202–210 (2016).
[Crossref]

F. Giavazzi, C. Haro-Pérez, and R. Cerbino, “Simultaneous characterization of rotational and translational diffusion of optically anisotropic particles by optical microscopy,” J. Phys. Condens. Matter 28(19), 195201 (2016).
[Crossref] [PubMed]

F. Giavazzi and R. Cerbino, “Digital Fourier microscopy for soft matter dynamics,” J. Opt. 16(8), 083001 (2014).
[Crossref]

P. J. Lu, F. Giavazzi, T. E. Angelini, E. Zaccarelli, F. Jargstorff, A. B. Schofield, J. N. Wilking, M. B. Romanowsky, D. A. Weitz, and R. Cerbino, “Characterizing concentrated, multiply scattering, and actively driven fluorescent systems with confocal differential dynamic microscopy,” Phys. Rev. Lett. 108(21), 218103 (2012).
[Crossref] [PubMed]

F. Giavazzi, D. Brogioli, V. Trappe, T. Bellini, and R. Cerbino, “Scattering information obtained by optical microscopy: differential dynamic microscopy and beyond,” Phys. Rev. E 80(3 Pt 1), 031403 (2009).
[Crossref] [PubMed]

D. Germain, M. Leocmach, and T. Gibaud, “Differential dynamic microscopy to characterize Brownian motion and bacteria motility,” Am. J. Phys. 84(3), 202–210 (2016).
[Crossref]

F. Croccolo, D. Brogioli, A. Vailati, M. Giglio, and D. S. Cannell, “Use of dynamic Schlieren interferometry to study fluctuations during free diffusion,” Appl. Opt. 45(10), 2166–2173 (2006).
[Crossref] [PubMed]

C. D. Chapman, S. Gorczyca, and R. M. Robertson-Anderson, “Crowding induces complex ergodic diffusion and dynamic elongation of large DNA molecules,” Biophys. J. 108(5), 1220–1228 (2015).
[Crossref] [PubMed]

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[Crossref] [PubMed]

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[Crossref] [PubMed]

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[Crossref] [PubMed]

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[Crossref] [PubMed]

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[Crossref] [PubMed]

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[Crossref]

R. M. Robertson, S. Laib, and D. E. Smith, “Diffusion of isolated DNA molecules: dependence on length and topology,” Proc. Natl. Acad. Sci. U.S.A. 103(19), 7310–7314 (2006).
[Crossref] [PubMed]

K. He, M. Spannuth, J. C. Conrad, and R. Krishnamoorti, “Diffusive dynamics of nanoparticles in aqueous dispersions,” Soft Matter 8(47), 11933–11938 (2012).
[Crossref]

A. V. Bayles, T. M. Squires, and M. E. Helgeson, “Dark-field differential dynamic microscopy,” Soft Matter 12(8), 2440–2452 (2016).
[Crossref] [PubMed]

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[Crossref] [PubMed]

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[Crossref] [PubMed]

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[Crossref] [PubMed]

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[Crossref] [PubMed]

T. V. Truong, W. Supatto, D. S. Koos, J. M. Choi, and S. E. Fraser, “Deep and fast live imaging with two-photon scanned light-sheet microscopy,” Nat. Methods 8(9), 757–760 (2011).
[Crossref] [PubMed]

J. Huisken, J. Swoger, F. Del Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical sectioning deep inside live embryos by selective plane illumination microscopy,” Science 305(5686), 1007–1009 (2004).
[Crossref] [PubMed]

T. Kalwarczyk, N. Ziȩbacz, A. Bielejewska, E. Zaboklicka, K. Koynov, J. Szymański, A. Wilk, A. Patkowski, J. Gapiński, H.-J. Butt, and R. Hołyst, “Comparative analysis of viscosity of complex liquids and cytoplasm of mammalian cells at the nanoscale,” Nano Lett. 11(5), 2157–2163 (2011).
[Crossref] [PubMed]

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[Crossref] [PubMed]

T. Sentjabrskaja, E. Zaccarelli, C. De Michele, F. Sciortino, P. Tartaglia, T. Voigtmann, S. U. Egelhaaf, and M. Laurati, “Anomalous dynamics of intruders in a crowded environment of mobile obstacles,” Nat. Commun. 7, 11133 (2016).
[Crossref] [PubMed]

K. He, F. Babaye Khorasani, S. T. Retterer, D. K. Thomas, J. C. Conrad, and R. Krishnamoorti, “Diffusive dynamics of nanoparticles in arrays of nanoposts,” ACS Nano 7(6), 5122–5130 (2013).
[Crossref] [PubMed]

P. G. Pitrone, J. Schindelin, L. Stuyvenberg, S. Preibisch, M. Weber, K. W. Eliceiri, J. Huisken, and P. Tomancak, “OpenSPIM: an open-access light-sheet microscopy platform,” Nat. Methods 10(7), 598–599 (2013).
[Crossref] [PubMed]

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