Abstract

The degeneration of Fraunhofer diffraction conditions in the optical system with converging spherical wave illumination for bacteria species identification based on diffraction patterns is analyzed by digital holographic methods. The obtained results have shown that the colonies of analyzed bacteria species act as biological lenses with the time-dependent light focusing properties, which are characterized and monitored by means of phase retrieval from sequentially captured digital holograms. This significantly affects the location of Fraunhofer patterns observation plane, which is continuously shifted across optical axis in time.

© 2013 Optical Society of America

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2013 (5)

A. Suchwałko, I. Buzalewicz, and H. Podbielska, “Identification of bacteria species by using morphological and textural properties of bacterial colonies diffraction patterns,” Proc. SPIE 8791, 8791 (2013).

J. Kostencka, T. Kozacki, and K. Liżewski, “Autofocusing method for tilted image plane detection in digital holographic microscopy,” -,” Opt. Commun. 297, 20–26 (2013).
[Crossref]

T. Kozacki, K. Liżewski, and J. Kostencka, “Holographic method for topography measurement of highly tilted and high numerical aperture micro structures,” Opt. Laser Technol. 49, 38–46 (2013).
[Crossref]

A. Suchwałko, I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Bacteria species identification by the statistical analysis of bacterial colonies Fresnel patterns,” Opt. Express 21(9), 11322–11337 (2013).
[Crossref] [PubMed]

K. Liżewski, T. Kozacki, and J. Kostencka, “Digital holographic microscope for measurement of high gradient deep topography object based on superresolution concept,” Opt. Lett. 38(11), 1878–1880 (2013).
[Crossref] [PubMed]

2012 (2)

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE82120R, 82120R-13 (2012).
[Crossref]

K. Liżewski, T. Kozacki, M. Józwik, and J. Kostencka, “On topography characterization of micro-optical elements with large numerical aperture using digital holographic microscopy,” Proc. SPIE 8430, 8430 (2012).

2011 (3)

2010 (2)

I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Image processing guided analysis for estimation of bacteria colonies number by means of optical transforms,” Opt. Express 18(12), 12992–13005 (2010).
[Crossref] [PubMed]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[Crossref] [PubMed]

2009 (3)

I. Buzalewicz, K. Wysocka, and H. Podbielska, “„Exploiting of optical transforms for bacteria evaluation in vitro,” Proc. SPIE 7371, 73711H, 73711H-6 (2009).
[Crossref]

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

T. Kozacki, M. Józwik, and R. Jóźwicki, ““Determination of optical field generated by a microlens using digital holographic method,” Opto-Electron. Rev. 17, 58–63 (2009).

2008 (3)

2007 (3)

2006 (3)

2005 (1)

R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
[PubMed]

2004 (2)

S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12Suppl), S122–S129 (2004).
[Crossref] [PubMed]

J. Thomason, “Spectroscopy takes security into the field,” Photon. Spectra 38, 83–85 (2004).

2002 (1)

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[Crossref] [PubMed]

2001 (1)

2000 (1)

S. G. B. Amyes, “The rise in bacterial resistance,” BMJ 320(7229), 199–200 (2000).
[Crossref] [PubMed]

1999 (1)

D. Ivnitski, I. Abdel-Hamid, P. Atanasov, and E. Wilkins, “Biosensors for detection of pathogenic bacteria,” Biosens. Bioelectron. 14(7), 599–624 (1999).
[Crossref]

1997 (1)

Abdel-Hamid, I.

D. Ivnitski, I. Abdel-Hamid, P. Atanasov, and E. Wilkins, “Biosensors for detection of pathogenic bacteria,” Biosens. Bioelectron. 14(7), 599–624 (1999).
[Crossref]

Adil, A.

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

Alfano, R. R.

Alimova, A.

Amyes, S. G. B.

S. G. B. Amyes, “The rise in bacterial resistance,” BMJ 320(7229), 199–200 (2000).
[Crossref] [PubMed]

Aptowicz, K. B.

Aroonnual, A.

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophotonics 4(4), 236–243 (2011).
[Crossref] [PubMed]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[Crossref] [PubMed]

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

Atanasov, P.

D. Ivnitski, I. Abdel-Hamid, P. Atanasov, and E. Wilkins, “Biosensors for detection of pathogenic bacteria,” Biosens. Bioelectron. 14(7), 599–624 (1999).
[Crossref]

Auger, J. C.

Bae, E.

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophotonics 4(4), 236–243 (2011).
[Crossref] [PubMed]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[Crossref] [PubMed]

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[Crossref] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

Bae, P. E.

Bai, N.

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[Crossref] [PubMed]

Banada, P. P.

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[Crossref] [PubMed]

M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
[Crossref] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

P. E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).

Bayraktar, B.

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

Bhunia, A. K.

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophotonics 4(4), 236–243 (2011).
[Crossref] [PubMed]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[Crossref] [PubMed]

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[Crossref] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

P. E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).

Bottiger, J.

Bronk, B. V.

Buzalewicz, I.

A. Suchwałko, I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Bacteria species identification by the statistical analysis of bacterial colonies Fresnel patterns,” Opt. Express 21(9), 11322–11337 (2013).
[Crossref] [PubMed]

A. Suchwałko, I. Buzalewicz, and H. Podbielska, “Identification of bacteria species by using morphological and textural properties of bacterial colonies diffraction patterns,” Proc. SPIE 8791, 8791 (2013).

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE82120R, 82120R-13 (2012).
[Crossref]

I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Influence of various growth conditions on Fresnel diffraction patterns of bacteria colonies examined in the optical system with converging spherical wave illumination,” Opt. Express 19(22), 21768–21785 (2011).
[Crossref] [PubMed]

I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Image processing guided analysis for estimation of bacteria colonies number by means of optical transforms,” Opt. Express 18(12), 12992–13005 (2010).
[Crossref] [PubMed]

I. Buzalewicz, K. Wysocka, and H. Podbielska, “„Exploiting of optical transforms for bacteria evaluation in vitro,” Proc. SPIE 7371, 73711H, 73711H-6 (2009).
[Crossref]

Chang, R. K.

Chen, S.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[Crossref] [PubMed]

Dostálek, J.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[Crossref] [PubMed]

Fell, N. F.

Gottlieb, P.

Guo, S.

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

Hernberg, R.

Hill, S. C.

Hilliard, L. R.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[Crossref] [PubMed]

Hirleman, E. D.

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophotonics 4(4), 236–243 (2011).
[Crossref] [PubMed]

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[Crossref] [PubMed]

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[Crossref] [PubMed]

M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
[Crossref] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

P. E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).

Holler, S.

Homola, J.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[Crossref] [PubMed]

Huff, K.

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[Crossref] [PubMed]

P. E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).

Ivnitski, D.

D. Ivnitski, I. Abdel-Hamid, P. Atanasov, and E. Wilkins, “Biosensors for detection of pathogenic bacteria,” Biosens. Bioelectron. 14(7), 599–624 (1999).
[Crossref]

Jiang, S.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[Crossref] [PubMed]

Józwicki, R.

T. Kozacki, M. Józwik, and R. Jóźwicki, ““Determination of optical field generated by a microlens using digital holographic method,” Opto-Electron. Rev. 17, 58–63 (2009).

Józwik, M.

K. Liżewski, T. Kozacki, M. Józwik, and J. Kostencka, “On topography characterization of micro-optical elements with large numerical aperture using digital holographic microscopy,” Proc. SPIE 8430, 8430 (2012).

T. Kozacki, M. Józwik, and K. Liżewski, “High-numerical-aperture microlens shape measurement with digital holographic microscopy,” Opt. Lett. 36(22), 4419–4421 (2011).
[Crossref] [PubMed]

T. Kozacki, M. Józwik, and R. Jóźwicki, ““Determination of optical field generated by a microlens using digital holographic method,” Opto-Electron. Rev. 17, 58–63 (2009).

Katz, A.

Keskinen, J.

Kostencka, J.

T. Kozacki, K. Liżewski, and J. Kostencka, “Holographic method for topography measurement of highly tilted and high numerical aperture micro structures,” Opt. Laser Technol. 49, 38–46 (2013).
[Crossref]

J. Kostencka, T. Kozacki, and K. Liżewski, “Autofocusing method for tilted image plane detection in digital holographic microscopy,” -,” Opt. Commun. 297, 20–26 (2013).
[Crossref]

K. Liżewski, T. Kozacki, and J. Kostencka, “Digital holographic microscope for measurement of high gradient deep topography object based on superresolution concept,” Opt. Lett. 38(11), 1878–1880 (2013).
[Crossref] [PubMed]

K. Liżewski, T. Kozacki, M. Józwik, and J. Kostencka, “On topography characterization of micro-optical elements with large numerical aperture using digital holographic microscopy,” Proc. SPIE 8430, 8430 (2012).

Kozacki, T.

J. Kostencka, T. Kozacki, and K. Liżewski, “Autofocusing method for tilted image plane detection in digital holographic microscopy,” -,” Opt. Commun. 297, 20–26 (2013).
[Crossref]

K. Liżewski, T. Kozacki, and J. Kostencka, “Digital holographic microscope for measurement of high gradient deep topography object based on superresolution concept,” Opt. Lett. 38(11), 1878–1880 (2013).
[Crossref] [PubMed]

T. Kozacki, K. Liżewski, and J. Kostencka, “Holographic method for topography measurement of highly tilted and high numerical aperture micro structures,” Opt. Laser Technol. 49, 38–46 (2013).
[Crossref]

K. Liżewski, T. Kozacki, M. Józwik, and J. Kostencka, “On topography characterization of micro-optical elements with large numerical aperture using digital holographic microscopy,” Proc. SPIE 8430, 8430 (2012).

T. Kozacki, M. Józwik, and K. Liżewski, “High-numerical-aperture microlens shape measurement with digital holographic microscopy,” Opt. Lett. 36(22), 4419–4421 (2011).
[Crossref] [PubMed]

T. Kozacki, M. Józwik, and R. Jóźwicki, ““Determination of optical field generated by a microlens using digital holographic method,” Opto-Electron. Rev. 17, 58–63 (2009).

Lary, T.

Laurila, T.

Levy, S. B.

S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12Suppl), S122–S129 (2004).
[Crossref] [PubMed]

Lizewski, K.

K. Liżewski, T. Kozacki, and J. Kostencka, “Digital holographic microscope for measurement of high gradient deep topography object based on superresolution concept,” Opt. Lett. 38(11), 1878–1880 (2013).
[Crossref] [PubMed]

J. Kostencka, T. Kozacki, and K. Liżewski, “Autofocusing method for tilted image plane detection in digital holographic microscopy,” -,” Opt. Commun. 297, 20–26 (2013).
[Crossref]

T. Kozacki, K. Liżewski, and J. Kostencka, “Holographic method for topography measurement of highly tilted and high numerical aperture micro structures,” Opt. Laser Technol. 49, 38–46 (2013).
[Crossref]

K. Liżewski, T. Kozacki, M. Józwik, and J. Kostencka, “On topography characterization of micro-optical elements with large numerical aperture using digital holographic microscopy,” Proc. SPIE 8430, 8430 (2012).

T. Kozacki, M. Józwik, and K. Liżewski, “High-numerical-aperture microlens shape measurement with digital holographic microscopy,” Opt. Lett. 36(22), 4419–4421 (2011).
[Crossref] [PubMed]

Maninen, A.

Marjam?ki, M.

Marshall, B.

S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12Suppl), S122–S129 (2004).
[Crossref] [PubMed]

Mechery, S. J.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[Crossref] [PubMed]

Munteanu, A.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[Crossref] [PubMed]

Niles, S.

Noble, R. T.

R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
[PubMed]

Pan, Y. L.

Pan, Y.-L.

Pinnick, R. G.

Podbielska, H.

A. Suchwałko, I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Bacteria species identification by the statistical analysis of bacterial colonies Fresnel patterns,” Opt. Express 21(9), 11322–11337 (2013).
[Crossref] [PubMed]

A. Suchwałko, I. Buzalewicz, and H. Podbielska, “Identification of bacteria species by using morphological and textural properties of bacterial colonies diffraction patterns,” Proc. SPIE 8791, 8791 (2013).

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE82120R, 82120R-13 (2012).
[Crossref]

I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Influence of various growth conditions on Fresnel diffraction patterns of bacteria colonies examined in the optical system with converging spherical wave illumination,” Opt. Express 19(22), 21768–21785 (2011).
[Crossref] [PubMed]

I. Buzalewicz, K. Wysocka-Król, and H. Podbielska, “Image processing guided analysis for estimation of bacteria colonies number by means of optical transforms,” Opt. Express 18(12), 12992–13005 (2010).
[Crossref] [PubMed]

I. Buzalewicz, K. Wysocka, and H. Podbielska, “„Exploiting of optical transforms for bacteria evaluation in vitro,” Proc. SPIE 7371, 73711H, 73711H-6 (2009).
[Crossref]

Putkiranta, M.

Ragheb, K.

Rajwa, B.

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
[Crossref] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

Rasooly, A.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[Crossref] [PubMed]

Robinson, J. P.

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[Crossref] [PubMed]

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

M. Venkatapathi, B. Rajwa, K. Ragheb, P. P. Banada, T. Lary, J. P. Robinson, and E. D. Hirleman, “High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics,” Appl. Opt. 47(5), 678–686 (2008).
[Crossref] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[Crossref] [PubMed]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

P. E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Biophysical modeling of forward scattering from bacterial colonies using scalar diffraction theory,” Appl. Opt. 46(17), 3639–3648 (2007).

Rosen, D. L.

Rostedt, A.

Saarela, J.

Suchwalko, A.

A. Suchwałko, I. Buzalewicz, and H. Podbielska, “Identification of bacteria species by using morphological and textural properties of bacterial colonies diffraction patterns,” Proc. SPIE 8791, 8791 (2013).

A. Suchwałko, I. Buzalewicz, A. Wieliczko, and H. Podbielska, “Bacteria species identification by the statistical analysis of bacterial colonies Fresnel patterns,” Opt. Express 21(9), 11322–11337 (2013).
[Crossref] [PubMed]

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE82120R, 82120R-13 (2012).
[Crossref]

Tan, W.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[Crossref] [PubMed]

Thomason, J.

J. Thomason, “Spectroscopy takes security into the field,” Photon. Spectra 38, 83–85 (2004).

Venkatapathi, M.

Wang, L.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[Crossref] [PubMed]

Weisberg, S. B.

R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
[PubMed]

Wieliczko, A.

Wilkins, E.

D. Ivnitski, I. Abdel-Hamid, P. Atanasov, and E. Wilkins, “Biosensors for detection of pathogenic bacteria,” Biosens. Bioelectron. 14(7), 599–624 (1999).
[Crossref]

Wysocka, K.

I. Buzalewicz, K. Wysocka, and H. Podbielska, “„Exploiting of optical transforms for bacteria evaluation in vitro,” Proc. SPIE 7371, 73711H, 73711H-6 (2009).
[Crossref]

Wysocka-Król, K.

Yamaguchi, I.

Yee, S. S.

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[Crossref] [PubMed]

Zhang, T.

Zhao, X. J.

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[Crossref] [PubMed]

Appl. Opt. (6)

Biosens. Bioelectron. (3)

D. Ivnitski, I. Abdel-Hamid, P. Atanasov, and E. Wilkins, “Biosensors for detection of pathogenic bacteria,” Biosens. Bioelectron. 14(7), 599–624 (1999).
[Crossref]

P. P. Banada, S. Guo, B. Bayraktar, E. Bae, B. Rajwa, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species,” Biosens. Bioelectron. 22(8), 1664–1671 (2007).
[Crossref] [PubMed]

P. P. Banada, K. Huff, E. Bae, B. Rajwa, A. Aroonnual, B. Bayraktar, A. Adil, J. P. Robinson, E. D. Hirleman, and A. K. Bhunia, “Label-free detection of multiple bacterial pathogens using light-scattering sensor,” Biosens. Bioelectron. 24(6), 1685–1692 (2009).
[Crossref] [PubMed]

BMJ (1)

S. G. B. Amyes, “The rise in bacterial resistance,” BMJ 320(7229), 199–200 (2000).
[Crossref] [PubMed]

Chem. Asian J. (1)

S. J. Mechery, X. J. Zhao, L. Wang, L. R. Hilliard, A. Munteanu, and W. Tan, “Using bioconjugated nanoparticles to monitor E. coli in a flow channel,” Chem. Asian J. 1(3), 384–390 (2006).
[Crossref] [PubMed]

Int. J. Food Microbiol. (1)

J. Homola, J. Dostálek, S. Chen, A. Rasooly, S. Jiang, and S. S. Yee, “Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk,” Int. J. Food Microbiol. 75(1-2), 61–69 (2002).
[Crossref] [PubMed]

J Biophotonics (1)

E. Bae, A. Aroonnual, A. K. Bhunia, and E. D. Hirleman, “On the sensitivity of forward scattering patterns from bacterial colonies to media composition,” J Biophotonics 4(4), 236–243 (2011).
[Crossref] [PubMed]

J. Biomed. Opt. (2)

E. Bae, N. Bai, A. Aroonnual, J. P. Robinson, A. K. Bhunia, and E. D. Hirleman, “Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns,” J. Biomed. Opt. 15(4), 045001 (2010).
[Crossref] [PubMed]

E. Bae, P. P. Banada, K. Huff, A. K. Bhunia, J. P. Robinson, and E. D. Hirleman, “Analysis of time-resolved scattering from macroscale bacterial colonies,” J. Biomed. Opt. 13(1), 014010 (2008).
[Crossref] [PubMed]

J. Water Health (1)

R. T. Noble and S. B. Weisberg, “A review of technologies for rapid detection of bacteria in recreational waters,” J. Water Health 3(4), 381–392 (2005).
[PubMed]

Nat. Med. (1)

S. B. Levy and B. Marshall, “Antibacterial resistance worldwide: causes, challenges and responses,” Nat. Med. 10(12Suppl), S122–S129 (2004).
[Crossref] [PubMed]

Opt. Commun. (1)

J. Kostencka, T. Kozacki, and K. Liżewski, “Autofocusing method for tilted image plane detection in digital holographic microscopy,” -,” Opt. Commun. 297, 20–26 (2013).
[Crossref]

Opt. Express (3)

Opt. Laser Technol. (1)

T. Kozacki, K. Liżewski, and J. Kostencka, “Holographic method for topography measurement of highly tilted and high numerical aperture micro structures,” Opt. Laser Technol. 49, 38–46 (2013).
[Crossref]

Opt. Lett. (4)

Opto-Electron. Rev. (1)

T. Kozacki, M. Józwik, and R. Jóźwicki, ““Determination of optical field generated by a microlens using digital holographic method,” Opto-Electron. Rev. 17, 58–63 (2009).

Photon. Spectra (1)

J. Thomason, “Spectroscopy takes security into the field,” Photon. Spectra 38, 83–85 (2004).

Proc. SPIE (4)

A. Suchwałko, I. Buzalewicz, and H. Podbielska, “Identification of bacteria species by using morphological and textural properties of bacterial colonies diffraction patterns,” Proc. SPIE 8791, 8791 (2013).

A. Suchwalko, I. Buzalewicz, and H. Podbielska, “Computer-based classification of bacteria species by analysis of their colonies Fresnel diffraction patterns,” Proc. SPIE82120R, 82120R-13 (2012).
[Crossref]

I. Buzalewicz, K. Wysocka, and H. Podbielska, “„Exploiting of optical transforms for bacteria evaluation in vitro,” Proc. SPIE 7371, 73711H, 73711H-6 (2009).
[Crossref]

K. Liżewski, T. Kozacki, M. Józwik, and J. Kostencka, “On topography characterization of micro-optical elements with large numerical aperture using digital holographic microscopy,” Proc. SPIE 8430, 8430 (2012).

Other (5)

J. W. Goodman, Introduction to Fourier Optics, Third edition, (Robert & Company Publishers, 2005).

J. D. Gaskill, Linear systems, Fourier transform and optics, (John Wiley & Sons, New York, 1978).

A. B. Forbes, A.B. 1989, “Least-Squares Best-Fit Geometric Elements,” National Physical Laboratory Report DITC 140/89 (1989).

I. Buzalewicz, K. Wysocka–Król, K. Kowal, and H. Podbielska, “Evaluation of antibacterial agents efficiency” in Information Technologies in Biomedicine 2, E. Pietka, J. Kawa ed. (Springer-Verlag, Berlin, 2010).

H. Podbielska, I. Buzalewicz, and A. Suchwalko, “Bacteria Classification by Means of the Statistical Analysis of Fresnel Diffraction Patterns of Bacteria Colonies,” Biomedical Optics (BIOMED) (2012).

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Figures (10)

Fig. 1
Fig. 1 The proposed optical system configuration for characterization of bacteria colonies diffraction patterns: L0 transforming lens in (x0,y0) plane, bacteria colonies on Petri dish in (x1,y1) plane, observation plane (x2,y2) [23].

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Fig. 2
Fig. 2 Exemplary Fresnel diffraction patterns of Escherichia coli colony recorded in different location of the observation plane: (a) 2cm, (b) 3cm, (c) 4 cm (bacteria colony diameter: approx. 0.9 mm, beam diameter: approx. 1 mm).

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Fig. 3
Fig. 3 Experimental DHM setup based on Mach-Zehnder interferometer: (a) full system, (b) the configuration of an object arm. P1,P2- polarizer’s; HWPP1,HWPP2 - half wave plates; M1,M2,M3 - mirrors; C - colimator; BS1,BS2 - beam splitter cubes; MO - microscope objective; IL - imaging lens; PZT - piezotransducer, MS- translation stage.

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Fig. 4
Fig. 4 Exemplary profile of Escherichia coli colony obtained by the confocal laser scanning microscope.

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Fig. 5
Fig. 5 The exemplary fringe pattern of Escherichia coli colony limited by rectangular aperture (a), phase modulo 2π (b) and topography reconstruction (c) obtained by LRA algorithm.

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Fig. 6
Fig. 6 The cross-sectional representations of intensity of integrated optical field transformed by bacterial colony in consecutive planes (zrange = 500-800µm) as obtained for six measurements separated by 30 min. time slot.

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Fig. 7
Fig. 7 The exemplary fitting of Escherichia coli colony profile by 10-th order polynomial performed for the colony measured in t = 0 min.

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Fig. 8
Fig. 8 The exemplary comparison of the experimentally reconstructed Escherichia coli colony profile and approximated ideal spherical surface (a) and the quantitative analysis of the deviation between them (b) performed for the colony measured in t = 0 min.

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Fig. 9
Fig. 9 Profiles of colony shape for t = 0 min. used for determination of the influence of bacterial colony profile variations on the simulated location of the focal point.

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Fig. 10
Fig. 10 Location of the focal point in function of ROC (a) and refractive index n (b).

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Tables (1)

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Table 1 Changes of Bacterial Colony Properties in Time

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Equations (7)

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ϕ( x 1 , y 1 ,t )=kn h MAX (t)−k( n −1) x 1 2 + y 1 2 2 ( 1 r ∞ − 1 r b (t) )=kn h MAX (t)−k x 1 2 + y 1 2 2 F b (t),
t b ( x ,y,t )= t b 0 ( x,y,t )exp{ iϕ( x,y,t ) }= t b 0 ( x,y,t )exp{ kn h MAX (t) }exp{ −k x 2 + y 2 2 F b (t) },
h LRA (x')=φ(x) (n k 0 − k 0 2 k z n −1 ) −1 ,
x s =φ(x)∇φ(x) k 0 −1 (n k z n − k 0 ) −1 ,
r i = ( x− x 0 ) 2 + ( y− y 0 ) 2 + ( z− z 0 ) 2 ,
U 2 (ξ,η)= ℑ −1 { ℑ{ U 1 (x,y) }⋅ℑ{ h LRA ( x,y ) } },
h (x,y)= 1 2π exp( ikr ) r z r ( 1 r −i 2π λ ),

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