Abstract

The development of imaging techniques beyond the diffraction limit has paved the way for detailed studies of nanostructures and molecular mechanisms in biological systems. Imaging thicker samples, such as mammalian cells and tissue, in all three dimensions, is challenging due to increased background and volumes to image. Light sheet illumination is a method that allows for selective irradiation of the image plane, and its inherent optical sectioning capability allows for imaging of biological samples with reduced background, photobleaching, and photodamage. In this review, we discuss the advantage of combining single-molecule imaging with light sheet illumination. We begin by describing the principles of single-molecule localization microscopy and of light sheet illumination. Finally, we present examples of designs that successfully have married single-molecule super-resolution imaging with light sheet illumination for improved precision in mammalian cells.

© 2018 Optical Society of America under the terms of the OSA Open Access Publishing Agreement

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  190. J. Nixon-Abell, C. J. Obara, A. V. Weigel, D. Li, W. R. Legant, C. S. Xu, H. A. Pasolli, K. Harvey, H. F. Hess, E. Betzig, C. Blackstone, and J. Lippincott-Schwartz, “Increased spatiotemporal resolution reveals highly dynamic dense tubular matrices in the peripheral ER,” Science 354, 3928 (2016).
  191. J. D. Manton and E. J. Rees, “triSPIM: light sheet microscopy with isotropic super-resolution,” Opt. Lett. 41(18), 4170–4173 (2016).
    [Crossref] [PubMed]
  192. T. Zhao, S. C. Lau, Y. Wang, Y. Su, H. Wang, A. Cheng, K. Herrup, N. Y. Ip, S. Du, and M. M. T. Loy, “Multicolor 4D Fluorescence Microscopy using Ultrathin Bessel Light Sheets,” Sci. Rep. 6(1), 26159 (2016).
    [Crossref] [PubMed]
  193. E. Zagato, T. Brans, S. Verstuyft, D. van Thourhout, J. Missinne, G. van Steenberge, J. Demeester, S. De Smedt, K. Remaut, K. Neyts, and K. Braeckmans, “Microfabricated devices for single objective single plane illumination microscopy (SoSPIM),” Opt. Express 25(3), 1732–1745 (2017).
    [Crossref] [PubMed]
  194. N. Ji, “Adaptive optical fluorescence microscopy,” Nat. Methods 14(4), 374–380 (2017).
    [Crossref] [PubMed]
  195. D. Wilding, P. Pozzi, O. Soloviev, G. Vdovin, and M. Verhaegen, “Adaptive illumination based on direct wavefront sensing in a light-sheet fluorescence microscope,” Opt. Express 24(22), 24896–24906 (2016).
    [Crossref] [PubMed]
  196. R. Mcgorty, D. Xie, and B. Huang, “High-NA open-top selective-plane illumination microscopy for biological imaging,” Opt. Express 25(15), 17798–17810 (2017).
    [Crossref] [PubMed]
  197. D. Burke, B. Patton, F. Huang, J. Bewersdorf, and M. Booth, “Adaptive optics correction of specimen-induced aberrations in single-molecule switching microscopy,” Optica 2(2), 177–185 (2015).
    [Crossref]

2018 (2)

A. K. Gustavsson, P. N. Petrov, M. Y. Lee, Y. Shechtman, and W. E. Moerner, “3D single-molecule super-resolution microscopy with a tilted light sheet,” Nat. Commun. 9(1), 123 (2018).
[Crossref] [PubMed]

M. Siemons, C. N. Hulleman, R. Ø. Thorsen, C. S. Smith, and S. Stallinga, “High precision wavefront control in point spread function engineering for single emitter localization,” Opt. Express 26(7), 8397–8416 (2018).
[Crossref]

2017 (19)

Y. Shechtman, A. K. Gustavsson, P. N. Petrov, E. Dultz, M. Y. Lee, K. Weis, and W. E. Moerner, “Observation of live chromatin dynamics in cells via 3D localization microscopy using Tetrapod point spread functions,” Biomed. Opt. Express 8(12), 5735–5748 (2017).
[Crossref] [PubMed]

P. N. Petrov, Y. Shechtman, and W. E. Moerner, “Measurement-based estimation of global pupil functions in 3D localization microscopy,” Opt. Express 25(7), 7945–7959 (2017).
[Crossref] [PubMed]

H. P. Babcock and X. Zhuang, “Analyzing single molecule localization microscopy data using cubic splines,” Sci. Rep. 7(1), 552 (2017).
[Crossref] [PubMed]

A. R. Carr, A. Ponjavic, S. Basu, J. McColl, A. M. Santos, S. Davis, E. D. Laue, D. Klenerman, and S. F. Lee, “Three-Dimensional Super-Resolution in Eukaryotic Cells Using the Double-Helix Point Spread Function,” Biophys. J. 112(7), 1444–1454 (2017).
[Crossref] [PubMed]

D. Wang, A. Agrawal, R. Piestun, and D. K. Schwartz, “Enhanced information content for three-dimensional localization and tracking using the double-helix point spread function with variable-angle illumination epifluorescence microscopy,” Appl. Phys. Lett. 110(21), 211107 (2017).
[Crossref]

S. J. Sahl, S. W. Hell, and S. Jakobs, “Fluorescence nanoscopy in cell biology,” Nat. Rev. Mol. Cell Biol. 18(11), 685–701 (2017).
[Crossref] [PubMed]

A. von Diezmann, Y. Shechtman, and W. E. Moerner, “Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking,” Chem. Rev. 117(11), 7244–7275 (2017).
[Crossref] [PubMed]

F. Schueder, J. Lara-Gutiérrez, B. J. Beliveau, S. K. Saka, H. M. Sasaki, J. B. Woehrstein, M. T. Strauss, H. Grabmayr, P. Yin, and R. Jungmann, “Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT,” Nat. Commun. 8(1), 2090 (2017).
[Crossref] [PubMed]

R. M. Power and J. Huisken, “A guide to light-sheet fluorescence microscopy for multiscale imaging,” Nat. Methods 14(4), 360–373 (2017).
[Crossref] [PubMed]

M. Duocastella, C. B. Arnold, and J. Puchalla, “Selectable light-sheet uniformity using tuned axial scanning,” Microsc. Res. Tech. 80(2), 250–259 (2017).
[Crossref] [PubMed]

K. M. Dean and R. Fiolka, “Lossless Three-Dimensional Parallelization in Digitally Scanned Light-Sheet Fluorescence Microscopy,” Sci. Rep. 7(1), 9332 (2017).
[Crossref] [PubMed]

Y. Wu, A. Kumar, C. Smith, E. Ardiel, P. Chandris, R. Christensen, I. Rey-Suarez, M. Guo, H. D. Vishwasrao, J. Chen, J. Tang, A. Upadhyaya, P. J. La Riviere, and H. Shroff, “Reflective imaging improves spatiotemporal resolution and collection efficiency in light sheet microscopy,” Nat. Commun. 8(1), 1452 (2017).
[Crossref] [PubMed]

M. Duocastella, G. Sancataldo, P. Saggau, P. Ramoino, P. Bianchini, and A. Diaspro, “Fast Inertia-Free Volumetric Light-Sheet Microscope,” ACS Photonics 4(7), 1797–1804 (2017).
[Crossref]

Z. Cao, C. Zhai, J. Li, F. Xian, and S. Pei, “Light sheet based on one-dimensional Airy beam generated by single cylindrical lens,” Opt. Commun. 393, 11–16 (2017).
[Crossref]

B. J. Chang, V. D. Perez Meza, and E. H. K. Stelzer, “csiLSFM combines light-sheet fluorescence microscopy and coherent structured illumination for a lateral resolution below 100 nm,” Proc. Natl. Acad. Sci. U.S.A. 114(19), 4869–4874 (2017).
[Crossref] [PubMed]

C. Gohn-Kreutz and A. Rohrbach, “Light needles in scattering media using selfreconstructing beams and the STED principle,” Optica 4(9), 1134–1142 (2017).
[Crossref]

E. Zagato, T. Brans, S. Verstuyft, D. van Thourhout, J. Missinne, G. van Steenberge, J. Demeester, S. De Smedt, K. Remaut, K. Neyts, and K. Braeckmans, “Microfabricated devices for single objective single plane illumination microscopy (SoSPIM),” Opt. Express 25(3), 1732–1745 (2017).
[Crossref] [PubMed]

N. Ji, “Adaptive optical fluorescence microscopy,” Nat. Methods 14(4), 374–380 (2017).
[Crossref] [PubMed]

R. Mcgorty, D. Xie, and B. Huang, “High-NA open-top selective-plane illumination microscopy for biological imaging,” Opt. Express 25(15), 17798–17810 (2017).
[Crossref] [PubMed]

2016 (28)

D. Wilding, P. Pozzi, O. Soloviev, G. Vdovin, and M. Verhaegen, “Adaptive illumination based on direct wavefront sensing in a light-sheet fluorescence microscope,” Opt. Express 24(22), 24896–24906 (2016).
[Crossref] [PubMed]

P. Theer, D. Dragneva, and M. Knop, “πSPIM: high NA high resolution isotropic light-sheet imaging in cell culture dishes,” Sci. Rep. 6(1), 32880 (2016).
[Crossref] [PubMed]

F. Greiss, M. Deligiannaki, C. Jung, U. Gaul, and D. Braun, “Single-Molecule Imaging in Living Drosophila Embryos with Reflected Light-Sheet Microscopy,” Biophys. J. 110(4), 939–946 (2016).
[Crossref] [PubMed]

Y. S. Hu, H. Cang, and B. F. Lillemeier, “Superresolution imaging reveals nanometer- and micrometer-scale spatial distributions of T-cell receptors in lymph nodes,” Proc. Natl. Acad. Sci. U.S.A. 113(26), 7201–7206 (2016).
[Crossref] [PubMed]

J. Nixon-Abell, C. J. Obara, A. V. Weigel, D. Li, W. R. Legant, C. S. Xu, H. A. Pasolli, K. Harvey, H. F. Hess, E. Betzig, C. Blackstone, and J. Lippincott-Schwartz, “Increased spatiotemporal resolution reveals highly dynamic dense tubular matrices in the peripheral ER,” Science 354, 3928 (2016).

J. D. Manton and E. J. Rees, “triSPIM: light sheet microscopy with isotropic super-resolution,” Opt. Lett. 41(18), 4170–4173 (2016).
[Crossref] [PubMed]

T. Zhao, S. C. Lau, Y. Wang, Y. Su, H. Wang, A. Cheng, K. Herrup, N. Y. Ip, S. Du, and M. M. T. Loy, “Multicolor 4D Fluorescence Microscopy using Ultrathin Bessel Light Sheets,” Sci. Rep. 6(1), 26159 (2016).
[Crossref] [PubMed]

P. Hoyer, G. de Medeiros, B. Balázs, N. Norlin, C. Besir, J. Hanne, H. G. Kräusslich, J. Engelhardt, S. J. Sahl, S. W. Hell, and L. Hufnagel, “Breaking the diffraction limit of light-sheet fluorescence microscopy by RESOLFT,” Proc. Natl. Acad. Sci. U.S.A. 113(13), 3442–3446 (2016).
[Crossref] [PubMed]

P. Strnad, S. Gunther, J. Reichmann, U. Krzic, B. Balazs, G. de Medeiros, N. Norlin, T. Hiiragi, L. Hufnagel, and J. Ellenberg, “Inverted light-sheet microscope for imaging mouse pre-implantation development,” Nat. Methods 13(2), 139–142 (2016).
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M. Plöschner, V. Kollárová, Z. Dostál, J. Nylk, T. Barton-Owen, D. E. K. Ferrier, R. Chmelík, K. Dholakia, and T. Čižmár, “Multimode fibre: Light-sheet microscopy at the tip of a needle,” Sci. Rep. 5(1), 18050 (2016).
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C. Gohn-Kreuz and A. Rohrbach, “Light-sheet generation in inhomogeneous media using self-reconstructing beams and the STED-principle,” Opt. Express 24(6), 5855–5865 (2016).
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V. Maioli, G. Chennell, H. Sparks, T. Lana, S. Kumar, D. Carling, A. Sardini, and C. Dunsby, “Time-lapse 3-D measurements of a glucose biosensor in multicellular spheroids by light sheet fluorescence microscopy in commercial 96-well plates,” Sci. Rep. 6(1), 37777 (2016).
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R. Itoh, J. R. Landry, S. S. Hamann, and O. Solgaard, “Light sheet fluorescence microscopy using high-speed structured and pivoting illumination,” Opt. Lett. 41(21), 5015–5018 (2016).
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K. M. Dean, P. Roudot, C. R. Reis, E. S. Welf, M. Mettlen, and R. Fiolka, “Diagonally Scanned Light-Sheet Microscopy for Fast Volumetric Imaging of Adherent Cells,” Biophys. J. 110(6), 1456–1465 (2016).
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P. Zhang, M. E. Phipps, P. M. Goodwin, and J. H. Werner, “Light-sheet microscopy by confocal line scanning of dual-Bessel beams,” J. Biomed. Opt. 21(10), 100502 (2016).
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W. R. Legant, L. Shao, J. B. Grimm, T. A. Brown, D. E. Milkie, B. B. Avants, L. D. Lavis, and E. Betzig, “High-density three-dimensional localization microscopy across large volumes,” Nat. Methods 13(4), 359–365 (2016).
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M. B. Meddens, S. Liu, P. S. Finnegan, T. L. Edwards, C. D. James, and K. A. Lidke, “Single objective light-sheet microscopy for high-speed whole-cell 3D super-resolution,” Biomed. Opt. Express 7(6), 2219–2236 (2016).
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D. Wilding, P. Pozzi, O. Soloviev, G. Vdovin, C. J. Sheppard, and M. Verhaegen, “Pupil filters for extending the field-of-view in light-sheet microscopy,” Opt. Lett. 41(6), 1205–1208 (2016).
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S. Quirin, N. Vladimirov, C. T. Yang, D. S. Peterka, R. Yuste, and M. B. Ahrens, “Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy,” Opt. Lett. 41(5), 855–858 (2016).
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A. Kumar, R. Christensen, M. Guo, P. Chandris, W. Duncan, Y. Wu, A. Santella, M. Moyle, P. W. Winter, D. Colón-Ramos, Z. Bao, and H. Shroff, “Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM),” Biol. Bull. 231(1), 26–39 (2016).
[Crossref] [PubMed]

B. Hajj, M. El Beheiry, and M. Dahan, “PSF engineering in multifocus microscopy for increased depth volumetric imaging,” Biomed. Opt. Express 7(3), 726–731 (2016).
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L. Oudjedi, J. B. Fiche, S. Abrahamsson, L. Mazenq, A. Lecestre, P. F. Calmon, A. Cerf, and M. Nöllmann, “Astigmatic multifocus microscopy enables deep 3D super-resolved imaging,” Biomed. Opt. Express 7(6), 2163–2173 (2016).
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J. B. Grimm, T. Klein, B. G. Kopek, G. Shtengel, H. F. Hess, M. Sauer, and L. D. Lavis, “Synthesis of a far-red photoactivatable silicon-containing rhodamine for super-resolution microscopy,” Angew. Chem. Int. Ed. Engl. 55(5), 1723–1727 (2016).
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J. B. Grimm, B. P. English, H. Choi, A. K. Muthusamy, B. P. Mehl, P. Dong, T. A. Brown, J. Lippincott-Schwartz, Z. Liu, T. Lionnet, and L. D. Lavis, “Bright photoactivatable fluorophores for single-molecule imaging,” Nat. Methods 13(12), 985–988 (2016).
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F. Huang, G. Sirinakis, E. S. Allgeyer, L. K. Schroeder, W. C. Duim, E. B. Kromann, T. Phan, F. E. Rivera-Molina, J. R. Myers, I. Irnov, M. Lessard, Y. Zhang, M. A. Handel, C. Jacobs-Wagner, C. P. Lusk, J. E. Rothman, D. Toomre, M. J. Booth, and J. Bewersdorf, “Ultra-High Resolution 3D Imaging of Whole Cells,” Cell 166(4), 1028–1040 (2016).
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B. Yu, J. Yu, W. Li, B. Cao, H. Li, D. Chen, and H. Niu, “Nanoscale three-dimensional single particle tracking by light-sheet-based double-helix point spread function microscopy,” Appl. Opt. 55(3), 449–453 (2016).
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Y. Shechtman, L. E. Weiss, A. S. Backer, M. Y. Lee, and W. E. Moerner, “Multicolour localization microscopy by point-spread-function engineering,” Nat. Photonics 10(9), 590–594 (2016).
[Crossref] [PubMed]

C. Smith, M. Huisman, M. Siemons, D. Grünwald, and S. Stallinga, “Simultaneous measurement of emission color and 3D position of single molecules,” Opt. Express 24(5), 4996–5013 (2016).
[Crossref] [PubMed]

2015 (22)

Y. Shechtman, L. E. Weiss, A. S. Backer, S. J. Sahl, and W. E. Moerner, “Precise 3D scan-free multiple-particle tracking over large axial ranges with Tetrapod point spread functions,” Nano Lett. 15, 4194–4199 (2015).
[Crossref] [PubMed]

A. Barsic, G. Grover, and R. Piestun, “Three-dimensional super-resolution and localization of dense clusters of single molecules,” Sci. Rep. 4(1), 5388 (2015).
[Crossref] [PubMed]

J. Huang, M. Sun, K. Gumpper, Y. Chi, and J. Ma, “3D multifocus astigmatism and compressed sensing (3D MACS) based superresolution reconstruction,” Biomed. Opt. Express 6(3), 902–917 (2015).
[Crossref] [PubMed]

Z. Liu, L. D. Lavis, and E. Betzig, “Imaging Live-Cell Dynamics and Structure at the Single-Molecule Level,” Mol. Cell 58(4), 644–659 (2015).
[Crossref] [PubMed]

W. E. Moerner, Y. Shechtman, and Q. Wang, “Single-molecule spectroscopy and imaging over the decades,” Faraday Discuss. 184, 9–36 (2015).
[Crossref] [PubMed]

L. Carlini, S. J. Holden, K. M. Douglass, and S. Manley, “Correction of a depth-dependent lateral distortion in 3D super-resolution imaging,” PLoS One 10(11), e0142949 (2015).
[Crossref] [PubMed]

J. B. Grimm, B. P. English, J. Chen, J. P. Slaughter, Z. Zhang, A. Revyakin, R. Patel, J. J. Macklin, D. Normanno, R. H. Singer, T. Lionnet, and L. D. Lavis, “A general method to improve fluorophores for live-cell and single-molecule microscopy,” Nat. Methods 12(3), 244–250 (2015).
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X. Chen, Z. Zeng, H. Wang, and P. Xi, “Three-dimensional multimodal sub-diffraction imaging with spinning-disk confocal microscopy using blinking/fluctuating probes,” Nano Res. 8(7), 2251–2260 (2015).
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W. C. Lemon and P. J. Keller, “Live Imaging of Nervous System Development and Function Using Light-Sheet Microscopy,” Mol. Reprod. Dev. 82(7-8), 605–618 (2015).
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R. K. Chhetri, F. Amat, Y. Wan, B. Höckendorf, W. C. Lemon, and P. J. Keller, “Whole-animal functional and developmental imaging with isotropic spatial resolution,” Nat. Methods 12(12), 1171–1178 (2015).
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G. de Medeiros, N. Norlin, S. Gunther, M. Albert, L. Panavaite, U. M. Fiuza, F. Peri, T. Hiiragi, U. Krzic, and L. Hufnagel, “Confocal multiview light-sheet microscopy,” Nat. Commun. 6(1), 8881 (2015).
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W. C. Lemon, S. R. Pulver, B. Höckendorf, K. McDole, K. Branson, J. Freeman, and P. J. Keller, “Whole-central nervous system functional imaging in larval Drosophila,” Nat. Commun. 6(1), 7924 (2015).
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R. Tomer, M. Lovett-Barron, I. Kauvar, A. Andalman, V. M. Burns, S. Sankaran, L. Grosenick, M. Broxton, S. Yang, and K. Deisseroth, “SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function,” Cell 163(7), 1796–1806 (2015).
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O. E. Olarte, J. Andilla, D. Artigas, and P. Loza-Alvarez, “Decoupled illumination detection in light sheet microscopy for fast volumetric imaging,” Optica 2(8), 702–705 (2015).
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I. Golub, B. Chebbi, and J. Golub, “Toward the optical “magic carpet”: reducing the divergence of a light sheet below the diffraction limit,” Opt. Lett. 40(21), 5121–5124 (2015).
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W. Zong, J. Zhao, X. Chen, Y. Lin, H. Ren, Y. Zhang, M. Fan, Z. Zhou, H. Cheng, Y. Sun, and L. Chen, “Large-field high-resolution two-photon digital scanned light-sheet microscopy,” Cell Res. 25(2), 254–257 (2015).
[Crossref] [PubMed]

L. Gao, “Extend the field of view of selective plan illumination microscopy by tiling the excitation light sheet,” Opt. Express 23(5), 6102–6111 (2015).
[Crossref] [PubMed]

K. M. Dean, P. Roudot, E. S. Welf, G. Danuser, and R. Fiolka, “Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy,” Biophys. J. 108(12), 2807–2815 (2015).
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D. Li, L. Shao, B. C. Chen, X. Zhang, M. Zhang, B. Moses, D. E. Milkie, J. R. Beach, J. A. Hammer, M. Pasham, T. Kirchhausen, M. A. Baird, M. W. Davidson, P. Xu, and E. Betzig, “Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics,” Science 349(6251), 3500 (2015).
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M. B. Bouchard, V. Voleti, C. S. Mendes, C. Lacefield, W. B. Grueber, R. S. Mann, R. M. Bruno, and E. M. C. Hillman, “Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms,” Nat. Photonics 9(2), 113–119 (2015).
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R. Galland, G. Grenci, A. Aravind, V. Viasnoff, V. Studer, and J. B. Sibarita, “3D high- and super-resolution imaging using single-objective SPIM,” Nat. Methods 12(7), 641–644 (2015).
[Crossref] [PubMed]

D. Burke, B. Patton, F. Huang, J. Bewersdorf, and M. Booth, “Adaptive optics correction of specimen-induced aberrations in single-molecule switching microscopy,” Optica 2(2), 177–185 (2015).
[Crossref]

2014 (19)

B. C. Chen, W. R. Legant, K. Wang, L. Shao, D. E. Milkie, M. W. Davidson, C. Janetopoulos, X. S. Wu, J. A. Hammer, Z. Liu, B. P. English, Y. Mimori-Kiyosue, D. P. Romero, A. T. Ritter, J. Lippincott-Schwartz, L. Fritz-Laylin, R. D. Mullins, D. M. Mitchell, J. N. Bembenek, A. C. Reymann, R. Böhme, S. W. Grill, J. T. Wang, G. Seydoux, U. S. Tulu, D. P. Kiehart, and E. Betzig, “Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution,” Science 346(6208), 1257998 (2014).
[Crossref] [PubMed]

T. Vettenburg, H. I. C. Dalgarno, J. Nylk, C. Coll-Lladó, D. E. K. Ferrier, T. Čižmár, F. J. Gunn-Moore, and K. Dholakia, “Light-sheet microscopy using an Airy beam,” Nat. Methods 11(5), 541–544 (2014).
[Crossref] [PubMed]

Z. Yang, M. Prokopas, J. Nylk, C. Coll-Lladó, F. J. Gunn-Moore, D. E. K. Ferrier, T. Vettenburg, and K. Dholakia, “A compact Airy beam light sheet microscope with a tilted cylindrical lens,” Biomed. Opt. Express 5(10), 3434–3442 (2014).
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M. Zhao, H. Zhang, Y. Li, A. Ashok, R. Liang, W. Zhou, and L. Peng, “Cellular imaging of deep organ using two-photon Bessel light-sheet nonlinear structured illumination microscopy,” Biomed. Opt. Express 5(5), 1296–1308 (2014).
[Crossref] [PubMed]

K. M. Dean and R. Fiolka, “Uniform and scalable light-sheets generated by extended focusing,” Opt. Express 22(21), 26141–26152 (2014).
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M. Mickoleit, B. Schmid, M. Weber, F. O. Fahrbach, S. Hombach, S. Reischauer, and J. Huisken, “High-resolution reconstruction of the beating zebrafish heart,” Nat. Methods 11(9), 919–922 (2014).
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S. Saghafi, K. Becker, C. Hahn, and H. U. Dodt, “3D-ultramicroscopy utilizing aspheric optics,” J. Biophotonics 7(1-2), 117–125 (2014).
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F. Strobl and E. H. K. Stelzer, “Non-invasive long-term fluorescence live imaging of Tribolium castaneum embryos,” Development 141(11), 2331–2338 (2014).
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T. J. Chozinski, L. A. Gagnon, and J. C. Vaughan, “Twinkle, twinkle little star: Photoswitchable fluorophores for super-resolution imaging,” FEBS Lett. 588(19), 3603–3612 (2014).
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R. Jungmann, M. S. Avendaño, J. B. Woehrstein, M. Dai, W. M. Shih, and P. Yin, “Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT,” Nat. Methods 11(3), 313–318 (2014).
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R. McGorty, J. Schnitzbauer, W. Zhang, and B. Huang, “Correction of depth-dependent aberrations in 3D single-molecule localization and super-resolution microscopy,” Opt. Lett. 39(2), 275–278 (2014).
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B. Rieger and S. Stallinga, “The Lateral and Axial Localization Uncertainty in Super-Resolution Light Microscopy,” ChemPhysChem 15(4), 664–670 (2014).
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A. Small and S. Stahlheber, “Fluorophore localization algorithms for super-resolution microscopy,” Nat. Methods 11(3), 267–279 (2014).
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H. Deschout, F. Cella Zanacchi, M. Mlodzianoski, A. Diaspro, J. Bewersdorf, S. T. Hess, and K. Braeckmans, “Precisely and accurately localizing single emitters in fluorescence microscopy,” Nat. Methods 11(3), 253–266 (2014).
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J. Min, S. J. Holden, L. Carlini, M. Unser, S. Manley, and J. C. Ye, “3D high-density localization microscopy using hybrid astigmatic/ biplane imaging and sparse image reconstruction,” Biomed. Opt. Express 5(11), 3935–3948 (2014).
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J. Broeken, B. Rieger, and S. Stallinga, “Simultaneous measurement of position and color of single fluorescent emitters using diffractive optics,” Opt. Lett. 39(11), 3352–3355 (2014).
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S. Jia, J. C. Vaughan, and X. Zhuang, “Isotropic three-dimensional super-resolution imaging with a self-bending point spread function,” Nat. Photonics 8(4), 302–306 (2014).
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Y. Shechtman, S. J. Sahl, A. S. Backer, and W. E. Moerner, “Optimal Point Spread Function Design for 3D Imaging,” Phys. Rev. Lett. 113(13), 133902 (2014).
[Crossref] [PubMed]

A. S. Backer and W. E. Moerner, “Extending Single-Molecule Microscopy Using Optical Fourier Processing,” J. Phys. Chem. B 118(28), 8313–8329 (2014).
[Crossref] [PubMed]

2013 (14)

A. Gahlmann, J. L. Ptacin, G. Grover, S. Quirin, A. R. S. von Diezmann, M. K. Lee, M. P. Backlund, L. Shapiro, R. Piestun, and W. E. Moerner, “Quantitative multicolor subdiffraction imaging of bacterial protein ultrastructures in three dimensions,” Nano Lett. 13(3), 987–993 (2013).
[Crossref] [PubMed]

R. P. J. Nieuwenhuizen, K. A. Lidke, M. Bates, D. L. Puig, D. Grünwald, S. Stallinga, and B. Rieger, “Measuring image resolution in optical nanoscopy,” Nat. Methods 10(6), 557–562 (2013).
[Crossref] [PubMed]

S. J. Sahl and W. E. Moerner, “Super-resolution fluorescence imaging with single molecules,” Curr. Opin. Struct. Biol. 23(5), 778–787 (2013).
[Crossref] [PubMed]

N. A. Hosny, M. Song, J. T. Connelly, S. Ameer-Beg, M. M. Knight, and A. P. Wheeler, “Super-Resolution Imaging Strategies for Cell Biologists Using a Spinning Disk Microscope,” PLoS One 8(10), e74604 (2013).
[Crossref] [PubMed]

T. Ichikawa, K. Nakazato, P. J. Keller, H. Kajiura-Kobayashi, E. H. K. Stelzer, A. Mochizuki, and S. Nonaka, “Live Imaging of Whole Mouse Embryos during Gastrulation: Migration Analyses of Epiblast and Mesodermal Cells,” PLoS One 8(7), e64506 (2013).
[Crossref] [PubMed]

P. J. Keller, “Imaging morphogenesis: technological advances and biological insights,” Science 340, 1234168 (2013).

F. O. Fahrbach, F. F. Voigt, B. Schmid, F. Helmchen, and J. Huisken, “Rapid 3D light-sheet microscopy with a tunable lens,” Opt. Express 21(18), 21010–21026 (2013).
[Crossref] [PubMed]

M. B. Ahrens, M. B. Orger, D. N. Robson, J. M. Li, and P. J. Keller, “Whole-brain functional imaging at cellular resolution using light-sheet microscopy,” Nat. Methods 10(5), 413–420 (2013).
[Crossref] [PubMed]

B. Schmid, G. Shah, N. Scherf, M. Weber, K. Thierbach, C. P. Campos, I. Roeder, P. Aanstad, and J. Huisken, “High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics,” Nat. Commun. 4, 2207 (2013).
[Crossref] [PubMed]

Y. Wu, P. Wawrzusin, J. Senseney, R. S. Fischer, R. Christensen, A. Santella, A. G. York, P. W. Winter, C. M. Waterman, Z. Bao, D. A. Colón-Ramos, M. McAuliffe, and H. Shroff, “Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy,” Nat. Biotechnol. 31(11), 1032–1038 (2013).
[Crossref] [PubMed]

J. C. Gebhardt, D. M. Suter, R. Roy, Z. W. Zhao, A. R. Chapman, S. Basu, T. Maniatis, and X. S. Xie, “Single-molecule imaging of transcription factor binding to DNA in live mammalian cells,” Nat. Methods 10(5), 421–426 (2013).
[Crossref] [PubMed]

Y. S. Hu, Q. Zhu, K. Elkins, K. Tse, Y. Li, J. A. Fitzpatrick, I. M. Verma, and H. Cang, “Light-sheet Bayesian microscopy enables deep-cell super-resolution imaging of heterochromatin in live human embryonic stem cells,” Opt. Nanoscopy 2(1), 7 (2013).
[Crossref] [PubMed]

E. Rosten, G. E. Jones, and S. Cox, “ImageJ plug-in for Bayesian analysis of blinking and bleaching,” Nat. Methods 10(2), 97–98 (2013).
[Crossref] [PubMed]

F. Cella Zanacchi, Z. Lavagnino, M. Faretta, L. Furia, and A. Diaspro, “Light-Sheet Confined Super-Resolution Using Two-Photon Photoactivation,” PLoS One 8(7), e67667 (2013).
[Crossref] [PubMed]

2012 (14)

S. Cox, E. Rosten, J. Monypenny, T. Jovanovic-Talisman, D. T. Burnette, J. Lippincott-Schwartz, G. E. Jones, and R. Heintzmann, “Bayesian localization microscopy reveals nanoscale podosome dynamics,” Nat. Methods 9(2), 195–200 (2012).
[Crossref] [PubMed]

F. O. Fahrbach and A. Rohrbach, “Propagation stability of self-reconstructing Bessel beams enables contrast-enhanced imaging in thick media,” Nat. Commun. 3(1), 632 (2012).
[Crossref] [PubMed]

L. Gao, L. Shao, C. D. Higgins, J. S. Poulton, M. Peifer, M. W. Davidson, X. Wu, B. Goldstein, and E. Betzig, “Noninvasive imaging beyond the diffraction limit of 3D dynamics in thickly fluorescent specimens,” Cell 151(6), 1370–1385 (2012).
[Crossref] [PubMed]

U. Krzic, S. Gunther, T. E. Saunders, S. J. Streichan, and L. Hufnagel, “Multiview light-sheet microscope for rapid in toto imaging,” Nat. Methods 9(7), 730–733 (2012).
[Crossref] [PubMed]

E. Baumgart and U. Kubitscheck, “Scanned light sheet microscopy with confocal slit detection,” Opt. Express 20(19), 21805–21814 (2012).
[Crossref] [PubMed]

L. Silvestri, A. Bria, L. Sacconi, G. Iannello, and F. S. Pavone, “Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain,” Opt. Express 20(18), 20582–20598 (2012).
[Crossref] [PubMed]

R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nat. Methods 9(7), 755–763 (2012).
[Crossref] [PubMed]

O. E. Olarte, J. Licea-Rodriguez, J. A. Palero, E. J. Gualda, D. Artigas, J. Mayer, J. Swoger, J. Sharpe, I. Rocha-Mendoza, R. Rangel-Rojo, and P. Loza-Alvarez, “Image formation by linear and nonlinear digital scanned light-sheet fluorescence microscopy with Gaussian and Bessel beam profiles,” Biomed. Opt. Express 3(7), 1492–1505 (2012).
[Crossref] [PubMed]

J. J. Schmied, A. Gietl, P. Holzmeister, C. Forthmann, C. Steinhauer, T. Dammeyer, and P. Tinnefeld, “Fluorescence and super-resolution standards based on DNA origami,” Nat. Methods 9(12), 1133–1134 (2012).
[Crossref] [PubMed]

R. Parthasarathy, “Rapid, accurate particle tracking by calculation of radial symmetry centers,” Nat. Methods 9(7), 724–726 (2012).
[Crossref] [PubMed]

I. Izeddin, M. El Beheiry, J. Andilla, D. Ciepielewski, X. Darzacq, and M. Dahan, “PSF shaping using adaptive optics for three-dimensional single-molecule super-resolution imaging and tracking,” Opt. Express 20(5), 4957–4967 (2012).
[Crossref] [PubMed]

M. P. Backlund, M. D. Lew, A. S. Backer, S. J. Sahl, G. Grover, A. Agrawal, R. Piestun, and W. E. Moerner, “Simultaneous, accurate measurement of the 3D position and orientation of single molecules,” Proc. Natl. Acad. Sci. U.S.A. 109(47), 19087–19092 (2012).
[Crossref] [PubMed]

G. Grover, K. DeLuca, S. Quirin, J. DeLuca, and R. Piestun, “Super-resolution photon-efficient imaging by nanometric double-helix point spread function localization of emitters (SPINDLE),” Opt. Express 20(24), 26681–26695 (2012).
[Crossref] [PubMed]

H. Babcock, Y. M. Sigal, and X. Zhuang, “A high-density 3D localization algorithm for stochastic optical reconstruction microscopy,” Opt. Nanoscopy 1(1), 6 (2012).
[Crossref] [PubMed]

2011 (14)

D. Baddeley, M. B. Cannell, and C. Soeller, “Three-dimensional sub-100 nm super-resolution imaging of biological samples using a phase ramp in the objective pupil,” Nano Res. 4(6), 589–598 (2011).
[Crossref]

M. D. Lew, S. F. Lee, M. Badieirostami, and W. E. Moerner, “Corkscrew point spread function for far-field three-dimensional nanoscale localization of pointlike objects,” Opt. Lett. 36(2), 202–204 (2011).
[Crossref] [PubMed]

M. D. Lew, S. F. Lee, J. L. Ptacin, M. K. Lee, R. J. Twieg, L. Shapiro, and W. E. Moerner, “Three-dimensional superresolution colocalization of intracellular protein superstructures and the cell surface in live Caulobacter crescentus,” Proc. Natl. Acad. Sci. U.S.A. 108(46), E1102–E1110 (2011).
[Crossref] [PubMed]

B. Yu, D. Chen, J. Qu, and H. Niu, “Fast Fourier domain localization algorithm of a single molecule with nanometer precision,” Opt. Lett. 36(22), 4317–4319 (2011).
[Crossref] [PubMed]

R. Tomer, K. Khairy, and P. J. Keller, “Shedding light on the system: Studying embryonic development with light sheet microscopy,” Curr. Opin. Genet. Dev. 21(5), 558–565 (2011).
[Crossref] [PubMed]

Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proc. Natl. Acad. Sci. U.S.A. 108(43), 17708–17713 (2011).
[Crossref] [PubMed]

A. Maizel, D. von Wangenheim, F. Federici, J. Haseloff, and E. H. K. Stelzer, “High-resolution live imaging of plant growth in near physiological bright conditions using light sheet fluorescence microscopy,” Plant J. 68(2), 377–385 (2011).
[Crossref] [PubMed]

P. A. Santi, “Light Sheet Fluorescence Microscopy: A Review,” J. Histochem. Cytochem. 59(2), 129–138 (2011).
[Crossref] [PubMed]

G. J. Kremers, S. G. Gilbert, P. J. Cranfill, M. W. Davidson, and D. W. Piston, “Fluorescent proteins at a glance,” J. Cell Sci. 124(2), 157–160 (2011).
[Crossref] [PubMed]

G. T. Dempsey, J. C. Vaughan, K. H. Chen, M. Bates, and X. Zhuang, “Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging,” Nat. Methods 8(12), 1027–1036 (2011).
[Crossref] [PubMed]

T. V. Truong, W. Supatto, D. S. Koos, J. M. Choi, and S. E. Fraser, “Deep and fast live imaging with two-photon scanned light-sheet microscopy,” Nat. Methods 8(9), 757–760 (2011).
[Crossref] [PubMed]

T. A. Planchon, L. Gao, D. E. Milkie, M. W. Davidson, J. A. Galbraith, C. G. Galbraith, and E. Betzig, “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination,” Nat. Methods 8(5), 417–423 (2011).
[Crossref] [PubMed]

M. Friedrich, Q. Gan, V. Ermolayev, and G. S. Harms, “STED-SPIM: Stimulated Emission Depletion Improves Sheet Illumination Microscopy Resolution,” Biophys. J. 100(8), L43–L45 (2011).
[Crossref] [PubMed]

F. Cella Zanacchi, Z. Lavagnino, M. Perrone Donnorso, A. Del Bue, L. Furia, M. Faretta, and A. Diaspro, “Live-cell 3D super-resolution imaging in thick biological samples,” Nat. Methods 8(12), 1047–1049 (2011).
[Crossref] [PubMed]

2010 (14)

J. G. Ritter, R. Veith, A. Veenendaal, J. P. Siebrasse, and U. Kubitscheck, “Light sheet microscopy for single molecule tracking in living tissue,” PLoS One 5(7), e11639 (2010).
[Crossref] [PubMed]

J. Palero, S. I. C. O. Santos, D. Artigas, and P. Loza-Alvarez, “A simple scanless two-photon fluorescence microscope using selective plane illumination,” Opt. Express 18(8), 8491–8498 (2010).
[Crossref] [PubMed]

J. Mertz and J. Kim, “Scanning light-sheet microscopy in the whole mouse brain with HiLo background rejection,” J. Biomed. Opt. 15(1), 016027 (2010).
[Crossref] [PubMed]

M. Lei and A. Zumbusch, “Structured light sheet fluorescence microscopy based on four beam interference,” Opt. Express 18(18), 19232–19241 (2010).
[Crossref] [PubMed]

R. Jungmann, C. Steinhauer, M. Scheible, A. Kuzyk, P. Tinnefeld, and F. C. Simmel, “Single-Molecule Kinetics and Super-Resolution Microscopy by Fluorescence Imaging of Transient Binding on DNA Origami,” Nano Lett. 10(11), 4756–4761 (2010).
[Crossref] [PubMed]

P. J. Keller, A. D. Schmidt, A. Santella, K. Khairy, Z. Bao, J. Wittbrodt, and E. H. K. Stelzer, “Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy,” Nat. Methods 7(8), 637–642 (2010).
[Crossref] [PubMed]

F. O. Fahrbach, P. Simon, and A. Rohrbach, “Microscopy with self-reconstructing beams,” Nat. Photonics 4(11), 780–785 (2010).
[Crossref]

F. O. Fahrbach and A. Rohrbach, “A line scanned light-sheet microscope with phase shaped self-reconstructing beams,” Opt. Express 18(23), 24229–24244 (2010).
[Crossref] [PubMed]

P. Schacht, S. B. Johnson, and P. A. Santi, “Implementation of a continuous scanning procedure and a line scan camera for thin-sheet laser imaging microscopy,” Biomed. Opt. Express 1(2), 598–609 (2010).
[Crossref] [PubMed]

K. I. Mortensen, L. S. Churchman, J. A. Spudich, and H. Flyvbjerg, “Optimized localization analysis for single-molecule tracking and super-resolution microscopy,” Nat. Methods 7(5), 377–381 (2010).
[Crossref] [PubMed]

C. S. Smith, N. Joseph, B. Rieger, and K. A. Lidke, “Fast, single-molecule localization that achieves theoretically minimum uncertainty,” Nat. Methods 7(5), 373–375 (2010).
[Crossref] [PubMed]

B. Huang, H. Babcock, and X. Zhuang, “Breaking the diffraction barrier: super-resolution imaging of cells,” Cell 143(7), 1047–1058 (2010).
[Crossref] [PubMed]

M. A. Thompson, M. D. Lew, M. Badieirostami, and W. E. Moerner, “Localizing and tracking single nanoscale emitters in three dimensions with high spatiotemporal resolution using a double-helix point spread function,” Nano Lett. 10(1), 211–218 (2010).
[Crossref] [PubMed]

M. Badieirostami, M. D. Lew, M. A. Thompson, and W. E. Moerner, “Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane,” Appl. Phys. Lett. 97(16), 161103 (2010).
[Crossref] [PubMed]

2009 (5)

S. R. P. Pavani, M. A. Thompson, J. S. Biteen, S. J. Lord, N. Liu, R. J. Twieg, R. Piestun, and W. E. Moerner, “Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function,” Proc. Natl. Acad. Sci. U.S.A. 106(9), 2995–2999 (2009).
[Crossref] [PubMed]

G. Shtengel, J. A. Galbraith, C. G. Galbraith, J. Lippincott-Schwartz, J. M. Gillette, S. Manley, R. Sougrat, C. M. Waterman, P. Kanchanawong, M. W. Davidson, R. D. Fetter, and H. F. Hess, “Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure,” Proc. Natl. Acad. Sci. U.S.A. 106(9), 3125–3130 (2009).
[Crossref] [PubMed]

A. V. Abraham, S. Ram, J. Chao, E. S. Ward, and R. J. Ober, “Quantitative study of single molecule location estimation techniques,” Opt. Express 17(26), 23352–23373 (2009).
[Crossref] [PubMed]

P. A. Santi, S. B. Johnson, M. Hillenbrand, P. Z. GrandPre, T. J. Glass, and J. R. Leger, “Thin-sheet laser imaging microscopy for optical sectioning of thick tissues,” Biotechniques 46(4), 287–294 (2009).
[PubMed]

J. Huisken and D. Y. R. Stainier, “Selective plane illumination microscopy techniques in developmental biology,” Development 136(12), 1963–1975 (2009).
[Crossref] [PubMed]

2008 (12)

P. J. Keller, A. D. Schmidt, J. Wittbrodt, and E. H. Stelzer, “Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy,” Science 322(5904), 1065–1069 (2008).
[Crossref] [PubMed]

J. G. Ritter, R. Veith, J. P. Siebrasse, and U. Kubitscheck, “High-contrast single-particle tracking by selective focal plane illumination microscopy,” Opt. Express 16(10), 7142–7152 (2008).
[Crossref] [PubMed]

T. F. Holekamp, D. Turaga, and T. E. Holy, “Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy,” Neuron 57(5), 661–672 (2008).
[Crossref] [PubMed]

A. J. Berglund, M. D. McMahon, J. J. McClelland, and J. A. Liddle, “Fast, bias-free algorithm for tracking single particles with variable size and shape,” Opt. Express 16(18), 14064–14075 (2008).
[Crossref] [PubMed]

M. F. Juette, T. J. Gould, M. D. Lessard, M. J. Mlodzianoski, B. S. Nagpure, B. T. Bennett, S. T. Hess, and J. Bewersdorf, “Three-dimensional sub-100 nm resolution fluorescence microscopy of thick samples,” Nat. Methods 5(6), 527–529 (2008).
[Crossref] [PubMed]

H. Shroff, C. G. Galbraith, J. A. Galbraith, and E. Betzig, “Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics,” Nat. Methods 5(5), 417–423 (2008).
[Crossref] [PubMed]

J. S. Biteen, M. A. Thompson, N. K. Tselentis, G. R. Bowman, L. Shapiro, and W. E. Moerner, “Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP,” Nat. Methods 5(11), 947–949 (2008).
[Crossref] [PubMed]

B. Huang, W. Wang, M. Bates, and X. Zhuang, “Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy,” Science 319(5864), 810–813 (2008).
[Crossref] [PubMed]

S. Ram, P. Prabhat, J. Chao, E. S. Ward, and R. J. Ober, “High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells,” Biophys. J. 95(12), 6025–6043 (2008).
[Crossref] [PubMed]

M. Tokunaga, N. Imamoto, and K. Sakata-Sogawa, “Highly inclined thin illumination enables clear single-molecule imaging in cells,” Nat. Methods 5(2), 159–161 (2008).
[Crossref] [PubMed]

C. A. Konopka and S. Y. Bednarek, “Variable-angle epifluorescence microscopy: a new way to look at protein dynamics in the plant cell cortex,” Plant J. 53(1), 186–196 (2008).
[Crossref] [PubMed]

C. Dunsby, “Optically sectioned imaging by oblique plane microscopy,” Opt. Express 16(25), 20306–20316 (2008).
[Crossref] [PubMed]

2007 (11)

T. Breuninger, K. Greger, and E. H. Stelzer, “Lateral modulation boosts image quality in single plane illumination fluorescence microscopy,” Opt. Lett. 32(13), 1938–1940 (2007).
[Crossref] [PubMed]

W. E. Moerner, “New directions in single-molecule imaging and analysis,” Proc. Natl. Acad. Sci. U.S.A. 104(31), 12596–12602 (2007).
[Crossref] [PubMed]

L. Holtzer, T. Meckel, and T. Schmidt, “Nanometric three-dimensional tracking of individual quantum dots in cells,” Appl. Phys. Lett. 90(5), 053902 (2007).
[Crossref]

J. Huisken and D. Y. R. Stainier, “Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM),” Opt. Lett. 32(17), 2608–2610 (2007).
[Crossref] [PubMed]

H. U. Dodt, U. Leischner, A. Schierloh, N. Jährling, C. P. Mauch, K. Deininger, J. M. Deussing, M. Eder, W. Zieglgänsberger, and K. Becker, “Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain,” Nat. Methods 4(4), 331–336 (2007).
[Crossref] [PubMed]

J. Swoger, P. Verveer, K. Greger, J. Huisken, and E. H. K. Stelzer, “Multi-view image fusion improves resolution in three-dimensional microscopy,” Opt. Express 15(13), 8029–8042 (2007).
[Crossref] [PubMed]

P. J. Verveer, J. Swoger, F. Pampaloni, K. Greger, M. Marcello, and E. H. K. Stelzer, “High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy,” Nat. Methods 4(4), 311–313 (2007).
[Crossref] [PubMed]

J. A. N. Buytaert and J. J. J. Dirckx, “Design and quantitative resolution measurements of an optical virtual sectioning three-dimensional imaging technique for biomedical specimens, featuring two-micrometer slicing resolution,” J. Biomed. Opt. 12(1), 014039 (2007).
[Crossref] [PubMed]

M. Bates, B. Huang, G. T. Dempsey, and X. Zhuang, “Multicolor super-resolution imaging with photo-switchable fluorescent probes,” Science 317(5845), 1749–1753 (2007).
[Crossref] [PubMed]

H. Shroff, C. G. Galbraith, J. A. Galbraith, H. White, J. Gillette, S. Olenych, M. W. Davidson, and E. Betzig, “Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes,” Proc. Natl. Acad. Sci. U.S.A. 104(51), 20308–20313 (2007).
[Crossref] [PubMed]

R. Arnaout, T. Ferrer, J. Huisken, K. Spitzer, D. Y. R. Stainier, M. Tristani-Firouzi, and N. C. Chi, “Zebrafish model for human long QT syndrome,” Proc. Natl. Acad. Sci. U.S.A. 104(27), 11316–11321 (2007).
[Crossref] [PubMed]

2006 (4)

A. Sharonov and R. M. Hochstrasser, “Wide-field subdiffraction imaging by accumulated binding of diffusing probes,” Proc. Natl. Acad. Sci. U.S.A. 103(50), 18911–18916 (2006).
[Crossref] [PubMed]

E. Betzig, G. H. Patterson, R. Sougrat, O. W. Lindwasser, S. Olenych, J. S. Bonifacino, M. W. Davidson, J. Lippincott-Schwartz, and H. F. Hess, “Imaging intracellular fluorescent proteins at nanometer resolution,” Science 313(5793), 1642–1645 (2006).
[Crossref] [PubMed]

S. T. Hess, T. P. K. Girirajan, and M. D. Mason, “Ultra-high resolution imaging by fluorescence photoactivation localization microscopy,” Biophys. J. 91(11), 4258–4272 (2006).
[Crossref] [PubMed]

M. J. Rust, M. Bates, and X. Zhuang, “Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM),” Nat. Methods 3(10), 793–796 (2006).
[Crossref] [PubMed]

2005 (2)

M. G. L. Gustafsson, “Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution,” Proc. Natl. Acad. Sci. U.S.A. 102(37), 13081–13086 (2005).
[Crossref] [PubMed]

E. Betzig, “Excitation strategies for optical lattice microscopy,” Opt. Express 13(8), 3021–3036 (2005).
[Crossref] [PubMed]

2004 (2)

J. Huisken, J. Swoger, F. Del Bene, J. Wittbrodt, and E. H. Stelzer, “Optical sectioning deep inside live embryos by selective plane illumination microscopy,” Science 305(5686), 1007–1009 (2004).
[Crossref] [PubMed]

R. J. Ober, S. Ram, and E. S. Ward, “Localization accuracy in single-molecule microscopy,” Biophys. J. 86(2), 1185–1200 (2004).
[Crossref] [PubMed]

2002 (2)

R. E. Thompson, D. R. Larson, and W. W. Webb, “Precise nanometer localization analysis for individual fluorescent probes,” Biophys. J. 82(5), 2775–2783 (2002).
[Crossref] [PubMed]

E. Fuchs, J. Jaffe, R. Long, and F. Azam, “Thin laser light sheet microscope for microbial oceanography,” Opt. Express 10(2), 145–154 (2002).
[Crossref] [PubMed]

2001 (2)

M. K. Cheezum, W. F. Walker, and W. H. Guilford, “Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles,” Biophys. J. 81(4), 2378–2388 (2001).
[Crossref] [PubMed]

M. F. Paige, E. J. Bjerneld, and W. E. Moerner, “A comparison of through-the-objective total internal reflection microscopy and epi-fluorescence microscopy for single-molecule fluorescence imaging,” Single Molecules 2(3), 191–201 (2001).
[Crossref]

2000 (1)

M. G. L. Gustafsson, “Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy,” J. Microsc. 198(2), 82–87 (2000).
[Crossref] [PubMed]

1999 (3)

S. Weiss, “Fluorescence Spectroscopy of Single Biomolecules,” Science 283(5408), 1676–1683 (1999).
[Crossref] [PubMed]

W. E. Moerner and M. Orrit, “Illuminating Single Molecules in Condensed Matter,” Science 283(5408), 1670–1676 (1999).
[Crossref] [PubMed]

T. A. Klar and S. W. Hell, “Subdiffraction resolution in far-field fluorescence microscopy,” Opt. Lett. 24(14), 954–956 (1999).
[Crossref] [PubMed]

1994 (2)

S. W. Hell and J. Wichmann, “Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy,” Opt. Lett. 19(11), 780–782 (1994).
[Crossref] [PubMed]

H. P. Kao and A. S. Verkman, “Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position,” Biophys. J. 67(3), 1291–1300 (1994).
[Crossref] [PubMed]

1993 (1)

A. H. Voie, D. H. Burns, and F. A. Spelman, “Orthogonal-plane fluorescence optical sectioning: three-dimensional imaging of macroscopic biological specimens,” J. Microsc. 170(3), 229–236 (1993).
[Crossref] [PubMed]

1991 (1)

W. P. Ambrose, T. Basché, and W. E. Moerner, “Detection and Spectroscopy of Single Pentacene Molecules in a p-Terphenyl Crystal by Means of Fluorescence Excitation,” J. Chem. Phys. 95(10), 7150–7163 (1991).
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1984 (1)

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P. N. Petrov, Y. Shechtman, and W. E. Moerner, “Measurement-based estimation of global pupil functions in 3D localization microscopy,” Opt. Express 25(7), 7945–7959 (2017).
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Y. Shechtman, A. K. Gustavsson, P. N. Petrov, E. Dultz, M. Y. Lee, K. Weis, and W. E. Moerner, “Observation of live chromatin dynamics in cells via 3D localization microscopy using Tetrapod point spread functions,” Biomed. Opt. Express 8(12), 5735–5748 (2017).
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Y. Shechtman, L. E. Weiss, A. S. Backer, M. Y. Lee, and W. E. Moerner, “Multicolour localization microscopy by point-spread-function engineering,” Nat. Photonics 10(9), 590–594 (2016).
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Y. Shechtman, L. E. Weiss, A. S. Backer, S. J. Sahl, and W. E. Moerner, “Precise 3D scan-free multiple-particle tracking over large axial ranges with Tetrapod point spread functions,” Nano Lett. 15, 4194–4199 (2015).
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W. E. Moerner, Y. Shechtman, and Q. Wang, “Single-molecule spectroscopy and imaging over the decades,” Faraday Discuss. 184, 9–36 (2015).
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A. S. Backer and W. E. Moerner, “Extending Single-Molecule Microscopy Using Optical Fourier Processing,” J. Phys. Chem. B 118(28), 8313–8329 (2014).
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S. J. Sahl and W. E. Moerner, “Super-resolution fluorescence imaging with single molecules,” Curr. Opin. Struct. Biol. 23(5), 778–787 (2013).
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M. P. Backlund, M. D. Lew, A. S. Backer, S. J. Sahl, G. Grover, A. Agrawal, R. Piestun, and W. E. Moerner, “Simultaneous, accurate measurement of the 3D position and orientation of single molecules,” Proc. Natl. Acad. Sci. U.S.A. 109(47), 19087–19092 (2012).
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M. D. Lew, S. F. Lee, J. L. Ptacin, M. K. Lee, R. J. Twieg, L. Shapiro, and W. E. Moerner, “Three-dimensional superresolution colocalization of intracellular protein superstructures and the cell surface in live Caulobacter crescentus,” Proc. Natl. Acad. Sci. U.S.A. 108(46), E1102–E1110 (2011).
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M. D. Lew, S. F. Lee, M. Badieirostami, and W. E. Moerner, “Corkscrew point spread function for far-field three-dimensional nanoscale localization of pointlike objects,” Opt. Lett. 36(2), 202–204 (2011).
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M. A. Thompson, M. D. Lew, M. Badieirostami, and W. E. Moerner, “Localizing and tracking single nanoscale emitters in three dimensions with high spatiotemporal resolution using a double-helix point spread function,” Nano Lett. 10(1), 211–218 (2010).
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