Abstract

Real-time high-throughput identification, screening, characterization, and processing of biological specimen is of great interest to a host of areas spanning from cell biology and medicine to security and defense. Much like human biometrics, microorganisms exhibit natural signatures that can be used for identification. In this paper, we first overview two optical techniques, namely digital holographic microscopy and holographic optical tweezers which can non-invasively image, manipulate, and identify microorganisms in three dimensions. The two methods bear similarities in their optics and implementation. Thus, we have proposed a new approach to identification of micro/nano organisms and cells by combining the two methods of digital holographic microscopy and holographic optical tweezers which can be integrated into a single compact hardware. The proposed system can simultaneously sense, control, identify, and track cells and microorganisms in three dimensions. New possibilities that arise from the proposed method are discussed.

© 2010 IEEE

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2009 (7)

I. Moon, M. Daneshpanah, B. Javidi, A. Stern, "Automated three-dimensional identification and tracking of micro/nanobiological organisms by computational holographic microscopy," Proc. IEEE 97, 990-1010 (2009).

M. Martnez-Corral, G. Saavedra, "The resolution challenge in 3D optical microscopy," Progress in Optics 53, 1-67 (2009).

S. Zwick, T. Haist, Y. Miyamoto, L. He, M. Warber, A. Hermerschmidt, W. Osten, "Holographic twin traps," J. Opt. A: Pure Appl. Opt. 11, 034011 (2009).

C. Kohler, T. Haist, W. Osten, "Model-free method for measuring the full jones matrix of reflective liquid-crystal displays," Opt. Eng. 48, 044002 (2009).

F. Schaal, M. Warber, S. Zwick, H. van der Kuip, T. Haist, W. Osten, "Marker-free cell discrimination by holographic optical tweezers," J. Eur. Opt. Soc. Rap. Public 4, 09028 (2009).

P. J. Rodrigo, L. Kelemen, D. Palima, C. A. Alonzo, P. Ormos, J. Gluckstad, "Optical microassembly platform for constructing reconfigurable microenvironments for biomedical studies," Opt. Express 17, 6578-6583 (2009).

C. Kohler, F. Zhang, W. Osten, "Characterization of a spatial light modulator and its application in phase retrieval," Appl. Opt. 48, 4003-4008 (2009).

2008 (3)

M. Henkes, H. van der Kuip, W. Aulitzky, "Therapeutic options for chronic myeloid leukemia: Focus on Imatinib," Therapeutics and Clinical Risk Management 4, 1-26 (2008).

C. Kohler, T. Haist, X. Schwab, W. Osten, "Hologram optimization for slm-based reconstruction with regard to polarization effects," Opt. Express 16, 14 853-14 861 (2008).

M. Debailleul, B. Simon, V. Georges, O. Haeberle, V. Lauer, "Holographic microscopy and diffractive microtomography of transparent samples," Meas. Sci. Technol. 19, 074009 (8pp) (2008).

2007 (4)

W. Choi, C. Fang-Yen, K. Badizadegan, S. Oh, N. Lue, R. R. Dasari, M. S. Feld, "Tomographic phase microscopy," Nat Meth 4, 717-719 (2007).

A. Stern, B. Javidi, "Theoretical analysis of three-dimensional imaging and recognition of microorganism technique using single-exposure on-line (seol) digital holography," J. Opt. Soc. Amer. A 24, 163-168 (2007).

M. DaneshPanah, B. Javidi, "Tracking biological microorganisms in sequence of 3d holographic microscopy images," Opt. Express 15, 10 761-10 766 (2007).

I. Moon, B. Javidi, "Three-dimensional identification of stem cells by computational holographic imaging," J. Roy. Soc. Interface 4, 315-313 (2007).

2006 (8)

Y. Frauel, T. Naughton, O. Matoba, E. Tajahuerce, B. Javidi, "Three-dimensional imaging and processing using computational holographic imaging," Proc. IEEE 94, 636-653 (2006).

B. Javidi, S. Yeom, I. Moon, M. Daneshpanah, "Real-time automated 3d sensing, detection, and recognition of dynamic biological micro-organic events," Opt Express 14, 3806-3829 (2006).

T. Haist, M. Reicherter, M. Wu, L. Seifert, "Using graphics boards to compute holograms," Comput. in Sci. Eng. 1, 8-13 (2006).

T. Haist, S. Zwick, M. Warber, W. Osten, "Spatial light modulators – versatile tools for holography," J. Holography Speckle 3, 125-36 (2006).

C. Kohler, X. Schwab, W. Osten, "Optimally tuned spatial light modulators for digital holography," Appl. Opt. 45, 960-967 (2006).

M. T. Wei, K. T. Yang, A. Karmenyan, A. Chiou, "Three-dimensional optical force field on a chinese hamster ovary cell in a fiber-optical dual-beam trap," Opt. Express 14, 3056-3064 (2006).

K. D. Wulff, D. G. Cole, R. L. Clark, R. DiLeonardo, J. Leach, J. Cooper, G. Gibson, M. J. Padgett, "Aberration correction in holographic optical tweezers," Opt. Express 14, 4169-4174 (2006).

P. R. T. Jess, V. Garcs-Chvez, D. Smith, M. Mazilu, L. Paterson, A. Riches, C. S. Herrington, W. Sibbett, K. Dholakia, "Dual beam fibre trap for Raman micro-spectroscopy of single cells," Opt. Express 14, 5779-5791 (2006).

2005 (1)

2004 (2)

J. Dharmadhikari, S. Roy, J. Dharmadhikari, S. Sharma, D. Mathur, "Torque-generating malaria-infected red blood cells in an optical trap," Opt. Express 12, 1179 (2004).

J. Liesener, M. Reicherter, H. Tiziani, "Determination and compensation of aberrations using slms," Opt. Commun. 233, 161-166 (2004).

2003 (2)

M. MacDonald, G. Spalding, K. Dholakia, "Microfluidic sorting in an optical lattice," Nature 426, 421-424 (2003).

M. Wang, "Optical forces for non-invasive cellular analysis," Appl. Opt. 42, 5765-5773 (2003).

2002 (2)

J. E. Curtis, B. A. Koss, D. Grier, "Dynamic holographic optical tweezers," Opt. Commun. 207, 169-75 (2002).

U. Schnars, W. Jüptner, "Digital recording and numerical reconstruction of holograms," Meas. Sci. Technol. 13, 85-101 (2002).

2001 (2)

S. C. Grover, A. G. Skirtach, R. C. Gauthier, C. Grover, "Automated single-cell sorting system based on optical trapping," J. Biomed. Opt. 6, 14-22 (2001).

J. Guck, R. Ananthakrishnan, H. Mahmood, T. Moon, C. Cunningham, J. Kaes, "The optical stretcher: A novel laser tool to micromanipulate cells," Biophys. J. 81, 767-784 (2001).

2000 (1)

1999 (2)

M. Reicherter, T. Haist, E. Wagemann, H. Tiziani, "Optical particle trapping with computer-generated holograms written on a liquid-crystal display," Opt. Lett. 24, 608-610 (1999).

E. Cuche, F. Bevilacqua, C. Depeursinge, "Digital holography for quantitative phase-contrast imaging," Opt Lett. 24, 291-293 (1999).

1998 (1)

1997 (1)

1996 (2)

Y. Hayasaki, S. Sumi, K. Mutoh, S. Suzuki, M. Itoh, T. Yataga, N. Nishida, "Optical manipulation of microparticles using diffractive optical elements," Opt. Sci. & New Technol. 27778, 229 (1996).

R. Simmons, J. Finer, S. Chu, J. Spudich, "Quantitative measurements of force and displacement using an optical trap," Biophys. J. 70, 1813-1822 (1996).

1995 (1)

H. He, N. R. Heckenberg, H. Rubinsztein-Dunlop, "Optical particle trapping with higher-order doughnut beams produced using high efficiency computer generated holograms," J. Modern Opt. 42, 217-23 (1995).

1994 (2)

K. Svoboda, S. Block, "Biological applications of optical forces," Annu. Rev. Biophys. Biomol. Struct. 23, 257-85 (1994).

U. Schnars, W. Jüptner, "Direct recording of holograms by a ccd target and numerical reconstruction," Appl. Opt. 33, 179-181 (1994).

1993 (1)

1992 (1)

1991 (1)

S. Chu, "Laser manipulation of atoms and particles," Science 253, 861-66 (1991).

1986 (1)

1970 (1)

A. Ashkin, "Acceleration and trapping of particles by radiation pressure," Phys. Rev. Lett. 24, 156 (1970).

1948 (1)

D. Gabor, "A new microscopic principle," Nature 161, 777-778 (1948).

Annu. Rev. Biophys. Biomol. Struct. (1)

K. Svoboda, S. Block, "Biological applications of optical forces," Annu. Rev. Biophys. Biomol. Struct. 23, 257-85 (1994).

Appl. Opt. (6)

Biophys. J. (2)

J. Guck, R. Ananthakrishnan, H. Mahmood, T. Moon, C. Cunningham, J. Kaes, "The optical stretcher: A novel laser tool to micromanipulate cells," Biophys. J. 81, 767-784 (2001).

R. Simmons, J. Finer, S. Chu, J. Spudich, "Quantitative measurements of force and displacement using an optical trap," Biophys. J. 70, 1813-1822 (1996).

Comput. in Sci. Eng. (1)

T. Haist, M. Reicherter, M. Wu, L. Seifert, "Using graphics boards to compute holograms," Comput. in Sci. Eng. 1, 8-13 (2006).

J. Biomed. Opt. (1)

S. C. Grover, A. G. Skirtach, R. C. Gauthier, C. Grover, "Automated single-cell sorting system based on optical trapping," J. Biomed. Opt. 6, 14-22 (2001).

J. Eur. Opt. Soc. Rap. Public (1)

F. Schaal, M. Warber, S. Zwick, H. van der Kuip, T. Haist, W. Osten, "Marker-free cell discrimination by holographic optical tweezers," J. Eur. Opt. Soc. Rap. Public 4, 09028 (2009).

J. Holography Speckle (1)

T. Haist, S. Zwick, M. Warber, W. Osten, "Spatial light modulators – versatile tools for holography," J. Holography Speckle 3, 125-36 (2006).

J. Modern Opt. (1)

H. He, N. R. Heckenberg, H. Rubinsztein-Dunlop, "Optical particle trapping with higher-order doughnut beams produced using high efficiency computer generated holograms," J. Modern Opt. 42, 217-23 (1995).

J. Opt. A: Pure Appl. Opt. (1)

S. Zwick, T. Haist, Y. Miyamoto, L. He, M. Warber, A. Hermerschmidt, W. Osten, "Holographic twin traps," J. Opt. A: Pure Appl. Opt. 11, 034011 (2009).

J. Opt. Soc. Amer. A (1)

A. Stern, B. Javidi, "Theoretical analysis of three-dimensional imaging and recognition of microorganism technique using single-exposure on-line (seol) digital holography," J. Opt. Soc. Amer. A 24, 163-168 (2007).

J. Roy. Soc. Interface (1)

I. Moon, B. Javidi, "Three-dimensional identification of stem cells by computational holographic imaging," J. Roy. Soc. Interface 4, 315-313 (2007).

Meas. Sci. Technol. (2)

U. Schnars, W. Jüptner, "Digital recording and numerical reconstruction of holograms," Meas. Sci. Technol. 13, 85-101 (2002).

M. Debailleul, B. Simon, V. Georges, O. Haeberle, V. Lauer, "Holographic microscopy and diffractive microtomography of transparent samples," Meas. Sci. Technol. 19, 074009 (8pp) (2008).

Nat Meth (1)

W. Choi, C. Fang-Yen, K. Badizadegan, S. Oh, N. Lue, R. R. Dasari, M. S. Feld, "Tomographic phase microscopy," Nat Meth 4, 717-719 (2007).

Nature (2)

D. Gabor, "A new microscopic principle," Nature 161, 777-778 (1948).

M. MacDonald, G. Spalding, K. Dholakia, "Microfluidic sorting in an optical lattice," Nature 426, 421-424 (2003).

Opt Express (1)

B. Javidi, S. Yeom, I. Moon, M. Daneshpanah, "Real-time automated 3d sensing, detection, and recognition of dynamic biological micro-organic events," Opt Express 14, 3806-3829 (2006).

Opt Lett. (1)

E. Cuche, F. Bevilacqua, C. Depeursinge, "Digital holography for quantitative phase-contrast imaging," Opt Lett. 24, 291-293 (1999).

Opt. Commun. (2)

J. E. Curtis, B. A. Koss, D. Grier, "Dynamic holographic optical tweezers," Opt. Commun. 207, 169-75 (2002).

J. Liesener, M. Reicherter, H. Tiziani, "Determination and compensation of aberrations using slms," Opt. Commun. 233, 161-166 (2004).

Opt. Eng. (1)

C. Kohler, T. Haist, W. Osten, "Model-free method for measuring the full jones matrix of reflective liquid-crystal displays," Opt. Eng. 48, 044002 (2009).

Opt. Express (8)

C. Kohler, T. Haist, X. Schwab, W. Osten, "Hologram optimization for slm-based reconstruction with regard to polarization effects," Opt. Express 16, 14 853-14 861 (2008).

M. DaneshPanah, B. Javidi, "Tracking biological microorganisms in sequence of 3d holographic microscopy images," Opt. Express 15, 10 761-10 766 (2007).

J. Dharmadhikari, S. Roy, J. Dharmadhikari, S. Sharma, D. Mathur, "Torque-generating malaria-infected red blood cells in an optical trap," Opt. Express 12, 1179 (2004).

B. Javidi, I. Moon, S. Yeom, E. Carapezza, "Three-dimensional imaging and recognition of microorganism using single-exposure on-line (seol) digital holography," Opt. Express 13, 4492-4506 (2005).

M. T. Wei, K. T. Yang, A. Karmenyan, A. Chiou, "Three-dimensional optical force field on a chinese hamster ovary cell in a fiber-optical dual-beam trap," Opt. Express 14, 3056-3064 (2006).

K. D. Wulff, D. G. Cole, R. L. Clark, R. DiLeonardo, J. Leach, J. Cooper, G. Gibson, M. J. Padgett, "Aberration correction in holographic optical tweezers," Opt. Express 14, 4169-4174 (2006).

P. R. T. Jess, V. Garcs-Chvez, D. Smith, M. Mazilu, L. Paterson, A. Riches, C. S. Herrington, W. Sibbett, K. Dholakia, "Dual beam fibre trap for Raman micro-spectroscopy of single cells," Opt. Express 14, 5779-5791 (2006).

P. J. Rodrigo, L. Kelemen, D. Palima, C. A. Alonzo, P. Ormos, J. Gluckstad, "Optical microassembly platform for constructing reconfigurable microenvironments for biomedical studies," Opt. Express 17, 6578-6583 (2009).

Opt. Lett. (5)

Opt. Sci. & New Technol. (1)

Y. Hayasaki, S. Sumi, K. Mutoh, S. Suzuki, M. Itoh, T. Yataga, N. Nishida, "Optical manipulation of microparticles using diffractive optical elements," Opt. Sci. & New Technol. 27778, 229 (1996).

Phys. Rev. Lett. (1)

A. Ashkin, "Acceleration and trapping of particles by radiation pressure," Phys. Rev. Lett. 24, 156 (1970).

Proc. IEEE (2)

Y. Frauel, T. Naughton, O. Matoba, E. Tajahuerce, B. Javidi, "Three-dimensional imaging and processing using computational holographic imaging," Proc. IEEE 94, 636-653 (2006).

I. Moon, M. Daneshpanah, B. Javidi, A. Stern, "Automated three-dimensional identification and tracking of micro/nanobiological organisms by computational holographic microscopy," Proc. IEEE 97, 990-1010 (2009).

Progress in Optics (1)

M. Martnez-Corral, G. Saavedra, "The resolution challenge in 3D optical microscopy," Progress in Optics 53, 1-67 (2009).

Science (1)

S. Chu, "Laser manipulation of atoms and particles," Science 253, 861-66 (1991).

Therapeutics and Clinical Risk Management (1)

M. Henkes, H. van der Kuip, W. Aulitzky, "Therapeutic options for chronic myeloid leukemia: Focus on Imatinib," Therapeutics and Clinical Risk Management 4, 1-26 (2008).

Other (4)

S. A. Benton, V. M. Bove, Holographic Imaging (Wiley-Interscience, 2008).

J. W. Goodman, Introduction to Fourier Optics (Roberts & Company, 2004).

E. Lueder, Liquid Crystal Displays (Wiley, 2001).

D. Dudley, W. M. Duncan, J. Slaughter, "Emerging digital micromirror device (dmd) applications," Proc. SPIE (2003) pp. 14-25.

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