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Microscopy

Mueller matrix polarimetry and polar decomposition of articular cartilage imaged in reflectance

Biomed. Opt. Express 12(8), 5160-5178 (2021)  View: HTML | PDF

Label-free microscopy of mitotic chromosomes using the polarization orthogonality breaking technique

Biomed. Opt. Express 12(8), 5290-5304 (2021)  View: HTML | PDF

Tissue Optics and Spectroscopy

Stokes polarization imaging applied for monitoring dynamic tissue optical clearing

Biomed. Opt. Express 12(8), 4821-4836 (2021)  View: HTML | PDF

Polarimetric data-based model for tissue recognition

Biomed. Opt. Express 12(8), 4852-4872 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Diffuse and Fluorescence Tomography

Three-compartment-breast (3CB) prior-guided diffuse optical tomography based on dual-energy digital breast tomosynthesis (DBT)

Biomed. Opt. Express 12(8), 4837-4851 (2021)  View: HTML | PDF

Endoscopy and Fiber Optics

Fiber optic probe with functional polymer composites for hyperthermia

Biomed. Opt. Express 12(8), 4730-4744 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Ultrafast laser surgery probe with a calcium fluoride miniaturized objective for bone ablation

Biomed. Opt. Express 12(8), 4779-4794 (2021)  View: HTML | PDF

Microscopy

Brightfield, fluorescence, and phase-contrast whole slide imaging via dual-LED autofocusing

Biomed. Opt. Express 12(8), 4651-4660 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

Single-laser-based simultaneous four-wavelength excitation source for femtosecond two-photon fluorescence microscopy

Biomed. Opt. Express 12(8), 4661-4679 (2021)  View: HTML | PDF

Computational framework for generating large panoramic super-resolution images from localization microscopy

Biomed. Opt. Express 12(8), 4759-4778 (2021)  View: HTML | PDF

Real-time 3D single-molecule localization microscopy analysis using lookup tables

Biomed. Opt. Express 12(8), 4955-4968 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy

Biomed. Opt. Express 12(8), 5214-5226 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Parametric comparison between sparsity-based and deep learning-based image reconstruction of super-resolution fluorescence microscopy

Biomed. Opt. Express 12(8), 5246-5260 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

PhaseRMiC: phase real-time microscope camera for live cell imaging

Biomed. Opt. Express 12(8), 5261-5271 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Quantification of scar collagen texture and prediction of scar development via second harmonic generation images and a generative adversarial network

Biomed. Opt. Express 12(8), 5305-5319 (2021)  View: HTML | PDF

Optical Biosensors

A compact photonic resonator absorption microscope for point of care digital resolution nucleic acid molecular diagnostics

Biomed. Opt. Express 12(8), 4637-4650 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

High-fidelity and rapid cellular-level Mueller matrix imaging for tissue identification with unstained sections

Biomed. Opt. Express 12(8), 4745-4758 (2021)  View: HTML | PDF

Cellular-resolution monitoring of ischemic stroke pathologies in the rat cortex

Biomed. Opt. Express 12(8), 4901-4919 (2021)  View: HTML | PDF  [Suppl. Mat. (5)]

Specific detection of glucose by an optical weak measurement sensor

Biomed. Opt. Express 12(8), 5128-5138 (2021)  View: HTML | PDF

Optical Coherence Tomography

Noninvasive OCT angiography-based blood attenuation measurements correlate with blood glucose level in the mouse retina

Biomed. Opt. Express 12(8), 4680-4688 (2021)  View: HTML | PDF

Weakly supervised anomaly segmentation in retinal OCT images using an adversarial learning approach

Biomed. Opt. Express 12(8), 4713-4729 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

An end-to-end network for segmenting the vasculature of three retinal capillary plexuses from OCT angiographic volumes

Biomed. Opt. Express 12(8), 4889-4900 (2021)  View: HTML | PDF

Closed-loop wavefront sensing and correction in the mouse brain with computed optical coherence microscopy

Biomed. Opt. Express 12(8), 4934-4954 (2021)  View: HTML | PDF

Framework for quantitative three-dimensional choroidal vasculature analysis using optical coherence tomography

Biomed. Opt. Express 12(8), 4982-4996 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

Layer-based, depth-resolved computation of attenuation coefficients and backscattering fractions in tissue using optical coherence tomography

Biomed. Opt. Express 12(8), 5037-5056 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Investigating the depolarization property of skin tissue by degree of polarization uniformity contrast using polarization-sensitive optical coherence tomography

Biomed. Opt. Express 12(8), 5073-5088 (2021)  View: HTML | PDF

In vivo measurement of the attenuation coefficient of the sclera and ciliary muscle

Biomed. Opt. Express 12(8), 5089-5106 (2021)  View: HTML | PDF

Rapid pseudo-H&E imaging using a fluorescence-inbuilt optical coherence microscopic imaging system

Biomed. Opt. Express 12(8), 5139-5158 (2021)  View: HTML | PDF

In vivo functional imaging of the human middle ear with a hand-held optical coherence tomography device

Biomed. Opt. Express 12(8), 5196-5213 (2021)  View: HTML | PDF

Optical Diagnostics

Exoscope-based videocapillaroscopy system for in vivo skin microcirculation imaging of various body areas

Biomed. Opt. Express 12(8), 4627-4636 (2021)  View: HTML | PDF

Deep learning classification of cervical dysplasia using depth-resolved angular light scattering profiles

Biomed. Opt. Express 12(8), 4997-5007 (2021)  View: HTML | PDF

Clinical assessment of W-band spectroscopy for non-invasive detection and monitoring of sustained hyperglycemia

Biomed. Opt. Express 12(8), 5008-5022 (2021)  View: HTML | PDF

Handheld spatial frequency domain imager for noninvasive Sjögren's syndrome labial salivary gland biopsy

Biomed. Opt. Express 12(8), 5057-5072 (2021)  View: HTML | PDF

Hyperspectral imaging and robust statistics in non-melanoma skin cancer analysis

Biomed. Opt. Express 12(8), 5107-5127 (2021)  View: HTML | PDF

Optical Therapies

Optical dosimeter for selective retinal therapy based on multi-port fiber-optic interferometry

Biomed. Opt. Express 12(8), 4920-4933 (2021)  View: HTML | PDF

Optics in Biotechnology

Automated microscope-independent fluorescence-guided micropipette

Biomed. Opt. Express 12(8), 4689-4699 (2021)  View: HTML | PDF

High-performance surface-enhanced Raman spectroscopy chip integrated with a micro-optical system for the rapid detection of creatinine in serum

Biomed. Opt. Express 12(8), 4795-4806 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Photoacoustic Imaging and Spectroscopy

Characterizing the aggressiveness of prostate cancer using an all-optical needle photoacoustic sensing probe: feasibility study

Biomed. Opt. Express 12(8), 4873-4888 (2021)  View: HTML | PDF

Terahertz Spectroscopy and Imaging

Hybrid reflection retrieval method for terahertz dielectric imaging of human bone

Biomed. Opt. Express 12(8), 4807-4820 (2021)  View: HTML | PDF

Terahertz dielectric spectroscopy and solid immersion microscopy of ex vivo glioma model 101.8: brain tissue heterogeneity

Biomed. Opt. Express 12(8), 5272-5289 (2021)  View: HTML | PDF

Tissue Optics and Spectroscopy

Estimation of core body temperature by near-infrared imaging of vein diameter change in the dorsal hand

Biomed. Opt. Express 12(8), 4700-4712 (2021)  View: HTML | PDF

Monitoring adaptation of skin tissue oxygenation during cycling ergometer exercise by frequency-domain diffuse optical spectroscopy

Biomed. Opt. Express 12(8), 5023-5035 (2021)  View: HTML | PDF

Analysis and improvement of non-contact SpO2 extraction using an RGB webcam

Biomed. Opt. Express 12(8), 5227-5245 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

Vision and Visual Optics

Subjective measurement of the Stiles-Crawford effect with different field sizes

Biomed. Opt. Express 12(8), 4969-4981 (2021)  View: HTML | PDF

Vision-correcting holographic display: evaluation of aberration correcting hologram

Biomed. Opt. Express 12(8), 5179-5195 (2021)  View: HTML | PDF

A compact photonic resonator absorption microscope for point of care digital resolution nucleic acid molecular diagnostics: publisher’s note

Biomed. Opt. Express 12(8), 5159-5159 (2021)  View: HTML | PDF

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