Biomedical Optics Express

Accelerated measurement of perikymata by an optical instrument

Imen Elhechmi, José Braga, Gautam Dasgupta, and Tijani Gharbi

Biomed. Opt. Express 4(10), 2124-2137 (2013)  View: HTML | PDF

Hyper-numerical aperture (NA = 2.8) microscope using λ = 1.56 µm femtosecond source for multi-photon imaging

Youngsik Kim, Phat Lu, Tom D. Milster, and Khanh Kieu

Biomed. Opt. Express 4(10), 1786-1794 (2013)  View: HTML | PDF

Introduction to the Novel Techniques in Microscopy feature issue

Jerome Mertz and Eric O. Potma

Biomed. Opt. Express 4(10), 2207-2208 (2013)  View: HTML | PDF

Axial response of high-resolution microendoscopy in scattering media

Michael H. Koucky and Mark C. Pierce

Biomed. Opt. Express 4(10), 2247-2256 (2013)  View: HTML | PDF

Structured illumination quantitative phase microscopy for enhanced resolution amplitude and phase imaging

Shwetadwip Chowdhury and Joseph Izatt

Biomed. Opt. Express 4(10), 1795-1805 (2013)  View: HTML | PDF

Implementation of spatial overlap modulation nonlinear optical microscopy using an electro-optic deflector

Keisuke Isobe, Hiroyuki Kawano, Akiko Kumagai, Atsushi Miyawaki, and Katsumi Midorikawa

Biomed. Opt. Express 4(10), 1937-1945 (2013)  View: HTML | PDF  [Suppl. Mat. (1)]

Imaging the bipolarity of myosin filaments with Interferometric Second Harmonic Generation microscopy

Maxime Rivard, Charles-André Couture, Amir K. Miri, Mathieu Laliberté, Antony Bertrand-Grenier, Luc Mongeau, and François Légaré

Biomed. Opt. Express 4(10), 2078-2086 (2013)  View: HTML | PDF

Volumetric imaging and quantification of cytoarchitecture and myeloarchitecture with intrinsic scattering contrast

Conor Leahy, Harsha Radhakrishnan, and Vivek J. Srinivasan

Biomed. Opt. Express 4(10), 1978-1990 (2013)  View: HTML | PDF  [Suppl. Mat. (2)]

3D static elastography at the micrometer scale using Full Field OCT

Amir Nahas, Morgane Bauer, Stéphane Roux, and A. Claude Boccara

Biomed. Opt. Express 4(10), 2138-2149 (2013)  View: HTML | PDF

Precise, motion-free polarization control in Second Harmonic Generation microscopy using a liquid crystal modulator in the infinity space

Chi-Hsiang Lien, Karissa Tilbury, Shean-Jen Chen, and Paul J. Campagnola

Biomed. Opt. Express 4(10), 1991-2002 (2013)  View: HTML | PDF

Achromatic miniature lens system for coherent Raman scattering microscopy

Richa Mittal, Mihaela Balu, Petra Wilder-Smith, and Eric O. Potma

Biomed. Opt. Express 4(10), 2196-2206 (2013)  View: HTML | PDF

Comparative review of interferometric detection of plasmonic nanoparticles

Adam Wax, Amihai Meiri, Siddarth Arumugam, and Matthew T. Rinehart

Biomed. Opt. Express 4(10), 2166-2178 (2013)  View: HTML | PDF

Independent and simultaneous three-dimensional optical trapping and imaging

Maya Yevnin, Dror Kasimov, Yael Gluckman, Yuval Ebenstein, and Yael Roichman

Biomed. Opt. Express 4(10), 2087-2094 (2013)  View: HTML | PDF  [Suppl. Mat. (1)]

Multi-channel medical device for time domain functional near infrared spectroscopy based on wavelength space multiplexing

Rebecca Re, Davide Contini, Massimo Turola, Lorenzo Spinelli, Lucia Zucchelli, Matteo Caffini, Rinaldo Cubeddu, and Alessandro Torricelli

Biomed. Opt. Express 4(10), 2231-2246 (2013)  View: HTML | PDF

Non-contact in vivo diffuse optical imaging using a time-gated scanning system

M. Mazurenka, L. Di Sieno, G. Boso, D. Contini, A. Pifferi, A. Dalla Mora, A. Tosi, H. Wabnitz, and R. Macdonald

Biomed. Opt. Express 4(10), 2257-2268 (2013)  View: HTML | PDF

Endoscopic probe optics for spectrally encoded confocal microscopy

DongKyun Kang, Robert W. Carruth, Minkyu Kim, Simon C. Schlachter, Milen Shishkov, Kevin Woods, Nima Tabatabaei, Tao Wu, and Guillermo J. Tearney

Biomed. Opt. Express 4(10), 1925-1936 (2013)  View: HTML | PDF

Local assessment of myelin health in a multiple sclerosis mouse model using a 2D Fourier transform approach

Steve Bégin, Erik Bélanger, Sophie Laffray, Benoît Aubé, Émilie Chamma, Jonathan Bélisle, Steve Lacroix, Yves De Koninck, and Daniel Côté

Biomed. Opt. Express 4(10), 2003-2014 (2013)  View: HTML | PDF

Multi-penalty conditional random field approach to super-resolved reconstruction of optical coherence tomography images

Ameneh Boroomand, Alexander Wong, Edward Li, Daniel S. Cho, Betty Ni, and Kostandinka Bizheva

Biomed. Opt. Express 4(10), 2032-2050 (2013)  View: HTML | PDF

Correction of image distortions in endoscopic optical coherence tomography based on two-axis scanning MEMS mirrors

Donglin Wang, Peng Liang, Sean Samuelson, Hongzhi Jia, Junshan Ma, and Huikai Xie

Biomed. Opt. Express 4(10), 2066-2077 (2013)  View: HTML | PDF

Extracting three-dimensional orientation and tractography of myofibers using optical coherence tomography

Yu Gan and Christine P. Fleming

Biomed. Opt. Express 4(10), 2150-2165 (2013)  View: HTML | PDF  [Suppl. Mat. (6)]

Separating structures of different fluorophore concentrations by principal component analysis on multispectral excitation-resolved fluorescence tomography images

Huangsheng Pu, Wei He, Guanglei Zhang, Bin Zhang, Fei Liu, Yi Zhang, Jianwen Luo, and Jing Bai

Biomed. Opt. Express 4(10), 1829-1845 (2013)  View: HTML | PDF

Compensation of optode sensitivity and position errors in diffuse optical tomography using the approximation error approach

Meghdoot Mozumder, Tanja Tarvainen, Simon R. Arridge, Jari Kaipio, and Ville Kolehmainen

Biomed. Opt. Express 4(10), 2015-2031 (2013)  View: HTML | PDF

An ideal-observer framework to investigate signal detectability in diffuse optical imaging

Abhinav K. Jha, Eric Clarkson, and Matthew A. Kupinski

Biomed. Opt. Express 4(10), 2107-2123 (2013)  View: HTML | PDF

A least-squares fixed-point iterative algorithm for multiple illumination photoacoustic tomography

Tyler Harrison, Peng Shao, and Roger J. Zemp

Biomed. Opt. Express 4(10), 2224-2230 (2013)  View: HTML | PDF

Sequential average segmented microscopy for high signal-to-noise ratio motion-artifact-free in vivo heart imaging

Claudio Vinegoni, Sungon Lee, Paolo Fumene Feruglio, Pasquina Marzola, Matthias Nahrendorf, and Ralph Weissleder

Biomed. Opt. Express 4(10), 2095-2106 (2013)  View: HTML | PDF

Label-free multi-photon imaging using a compact femtosecond fiber laser mode-locked by carbon nanotube saturable absorber

K. Kieu, S. Mehravar, R. Gowda, R. A. Norwood, and N. Peyghambarian

Biomed. Opt. Express 4(10), 2187-2195 (2013)  View: HTML | PDF  [Suppl. Mat. (4)]

Multi-modal approach using Raman spectroscopy and optical coherence tomography for the discrimination of colonic adenocarcinoma from normal colon

Praveen C. Ashok, Bavishna B. Praveen, Nicola Bellini, Andrew Riches, Kishan Dholakia, and C. Simon Herrington

Biomed. Opt. Express 4(10), 2179-2186 (2013)  View: HTML | PDF

In vivo imaging of immune cell dynamics in skin in response to zinc-oxide nanoparticle exposure

Benedikt W. Graf, Eric J. Chaney, Marina Marjanovic, Michael De Lisio, Maria C. Valero, Marni D. Boppart, and Stephen A. Boppart

Biomed. Opt. Express 4(10), 1817-1828 (2013)  View: HTML | PDF

Maximum-likelihood estimation in Optical Coherence Tomography in the context of the tear film dynamics

Jinxin Huang, Eric Clarkson, Matthew Kupinski, Kye-sung Lee, Kara L. Maki, David S. Ross, James V. Aquavella, and Jannick P. Rolland

Biomed. Opt. Express 4(10), 1806-1816 (2013)  View: HTML | PDF

Pulsatile motion of the trabecular meshwork in healthy human subjects quantified by phase-sensitive optical coherence tomography

Peng Li, Tueng T. Shen, Murray Johnstone, and Ruikang K. Wang

Biomed. Opt. Express 4(10), 2051-2065 (2013)  View: HTML | PDF

Intravascular optical coherence tomography measurement of size and apposition of metallic stents

Sahar Elahi, Marc D. Feldman, Jouke Dijkstra, and Thomas E. Milner

Biomed. Opt. Express 4(10), 1876-1882 (2013)  View: HTML | PDF

Multi-MHz retinal OCT

Thomas Klein, Wolfgang Wieser, Lukas Reznicek, Aljoscha Neubauer, Anselm Kampik, and Robert Huber

Biomed. Opt. Express 4(10), 1890-1908 (2013)  View: HTML | PDF  [Suppl. Mat. (3)]

Blood flow velocity quantification using split-spectrum amplitude-decorrelation angiography with optical coherence tomography

Jason Tokayer, Yali Jia, Al-Hafeez Dhalla, and David Huang

Biomed. Opt. Express 4(10), 1909-1924 (2013)  View: HTML | PDF

Perturbation Monte Carlo methods for tissue structure alterations

Jennifer Nguyen, Carole K. Hayakawa, Judith R. Mourant, and Jerome Spanier

Biomed. Opt. Express 4(10), 1946-1963 (2013)  View: HTML | PDF

Light transport in turbid media with non-scattering, low-scattering and high absorption heterogeneities based on hybrid simplified spherical harmonics with radiosity model

Defu Yang, Xueli Chen, Zhen Peng, Xiaorui Wang, Jorge Ripoll, Jing Wang, and Jimin Liang

Biomed. Opt. Express 4(10), 2209-2223 (2013)  View: HTML | PDF

In vivo three dimensional dual wavelength photoacoustic tomography imaging of the far red fluorescent protein E2-Crimson expressed in adult zebrafish

Mengyang Liu, Nicole Schmitner, Michelle G. Sandrian, Behrooz Zabihian, Boris Hermann, Willi Salvenmoser, Dirk Meyer, and Wolfgang Drexler

Biomed. Opt. Express 4(10), 1846-1855 (2013)  View: HTML | PDF

Short-lag spatial coherence beamforming of photoacoustic images for enhanced visualization of prostate brachytherapy seeds

Muyinatu A. Lediju Bell, Nathanael Kuo, Danny Y. Song, and Emad M. Boctor

Biomed. Opt. Express 4(10), 1964-1977 (2013)  View: HTML | PDF

Evaluation of laser speckle contrast imaging as an intrinsic method to monitor blood brain barrier integrity

Suzie Dufour, Yaaseen Atchia, Raanan Gad, Dene Ringuette, Iliya Sigal, and Ofer Levi

Biomed. Opt. Express 4(10), 1856-1875 (2013)  View: HTML | PDF

Effects of speckle/pixel size ratio on temporal and spatial speckle-contrast analysis of dynamic scattering systems: Implications for measurements of blood-flow dynamics

J. C. Ramirez-San-Juan, E. Mendez-Aguilar, N. Salazar-Hermenegildo, A. Fuentes-Garcia, R. Ramos-Garcia, and B. Choi

Biomed. Opt. Express 4(10), 1883-1889 (2013)  View: HTML | PDF

Low-cost laser speckle contrast imaging of blood flow using a webcam

Lisa M. Richards, S. M. Shams Kazmi, Janel L. Davis, Katherine E. Olin, and Andrew K. Dunn

Biomed. Opt. Express 4(10), 2269-2283 (2013)  View: HTML | PDF