Farewell editorial

Christoph K. Hitzenberger and Adam Gibson

Biomed. Opt. Express 13(1), 408-409 (2022)  View: HTML | PDF

Cell-modified plasmonic interface for the signal-amplified detection of Cucurbitacin E

Yaofei Chen, Shuihua Peng, Peili Zhao, Lei Chen, Gui-shi Liu, Dongyun Ouyang, Yunhan Luo, and Zhe Chen

Biomed. Opt. Express 13(1), 274-283 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

2.5 Hz sample rate time-domain near-infrared optical tomography based on SPAD-camera image tissue hemodynamics

Jingjing Jiang, Aldo Di Costanzo Mata, Scott Lindner, Edoardo Charbon, Martin Wolf, and Alexander Kalyanov

Biomed. Opt. Express 13(1), 133-146 (2022)  View: HTML | PDF

Fiber-optic large-depth 3D chromatic confocal endomicroscopy

Xuefang Yang, Ye Wang, Hejun Zhang, Haoye Qin, Siyu Wang, Yihang Tong, Keji Zhou, Rui Sun, Shuhua Yue, Xun Chen, Shigang Ding, and Pu Wang

Biomed. Opt. Express 13(1), 300-313 (2022)  View: HTML | PDF  [Suppl. Mat. (4)]

Preprocessing methods for quantitative phase image stitching

Piotr Stȩpień, Wojciech Krauze, and Małgorzata Kujawińska

Biomed. Opt. Express 13(1), 1-13 (2022)  View: HTML | PDF

Two plus one is almost three: a fast approximation for multi-view deconvolution

Manuel Hüpfel, Manuel Fernández Merino, Johannes Bennemann, Masanari Takamiya, Sepand Rastegar, Anja Tursch, Thomas W. Holstein, and G. Ulrich Nienhaus

Biomed. Opt. Express 13(1), 147-158 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Low concentration Phloxine B staining for high chemical contrast, nonlinear microscope mosaic imaging of skin alterations in pseudoxanthoma elasticum

L. Fésűs, D. Plázár, A. Kolonics, L. Martin, N. Wikonkál, M. Medvecz, and R. Szipőcs

Biomed. Opt. Express 13(1), 252-261 (2022)  View: HTML | PDF

Aberration measurement and correction on a large field of view in fluorescence microscopy

T. Furieri, D. Ancora, G. Calisesi, S. Morara, A. Bassi, and S. Bonora

Biomed. Opt. Express 13(1), 262-273 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Deep-3D microscope: 3D volumetric microscopy of thick scattering samples using a wide-field microscope and machine learning

Bowen Li, Shiyu Tan, Jiuyang Dong, Xiaocong Lian, Yongbing Zhang, Xiangyang Ji, and Ashok Veeraraghavan

Biomed. Opt. Express 13(1), 284-299 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Deep learning-based single-shot autofocus method for digital microscopy

Jun Liao, Xu Chen, Ge Ding, Pei Dong, Hu Ye, Han Wang, Yongbing Zhang, and Jianhua Yao

Biomed. Opt. Express 13(1), 314-327 (2022)  View: HTML | PDF

Imaging deeper than the transport mean free path with multiphoton microscopy

Najva Akbari, Mihailo R Rebec, Fei Xia, and Chris Xu

Biomed. Opt. Express 13(1), 452-463 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Differential characterization of lumbar spine associated tissue histology with nonlinear optical microscopy

Fei Zou, Lili Zhang, Xiang Zou, Jing Huang, Cong Nie, Jianyuan Jiang, Chongyuan Guo, Hongli Wang, Xiaosheng Ma, and Minbiao Ji

Biomed. Opt. Express 13(1), 474-484 (2022)  View: HTML | PDF

Analysis of the surface plasmon resonance interferometric imaging performance of scanning confocal surface plasmon microscopy

Sorawit Tontarawongsa, Sarinporn Visitsattapongse, and Suejit Pechprasarn

Biomed. Opt. Express 13(1), 485-501 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Three-dimensional analysis of blood platelet spreading using digital holographic microscopy: a statistical study of the differential effect of coatings in healthy volunteers and dialyzed patients

Jérôme Dohet-Eraly, Karim Zouaoui Boudjeltia, Alexandre Rousseau, Patrick Queeckers, Christophe Lelubre, Jean-Marc Desmet, Bastien Chopard, Catherine Yourassowsky, and Frank Dubois

Biomed. Opt. Express 13(1), 502-513 (2022)  View: HTML | PDF

Optically computed phase microscopy for quantitative dynamic imaging of label-free cells and nanoparticles

Xuan Liu, Zhaoxiong Wan, Yuanwei Zhang, and Yuwei Liu

Biomed. Opt. Express 13(1), 514-524 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Optical coherence tomography-guided confocal Raman microspectroscopy for rapid measurements in tissues

Xiaojing Ren, Kan Lin, Chao-Mao Hsieh, Linbo Liu, Xin Ge, and Quan Liu

Biomed. Opt. Express 13(1), 344-357 (2022)  View: HTML | PDF

Single infrared light pulses induce excitatory and inhibitory neuromodulation

Xuedong Zhu, Jen-Wei Lin, Ahmet Turnali, and Michelle Y. Sander

Biomed. Opt. Express 13(1), 374-388 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Intra-tracheal multiplexed sensing of contact pressure and perfusion

Ricardo Correia, Brett Gadsby, Sergiy Korposh, Andrew M. Norris, Barrie R. Hayes-Gill, Rishie Sinha, Jonathan G. Hardman, David S. Gardner, Simon Talbot, Daniel Harvey, Julian McGlashan, and Stephen P. Morgan

Biomed. Opt. Express 13(1), 48-64 (2022)  View: HTML | PDF

A fluorescent reporter on electrostatic DNA-ligand interactions

Chandrashekhar U. Murade and George T. Shubeita

Biomed. Opt. Express 13(1), 159-167 (2022)  View: HTML | PDF

Single-cell all-optical coherence elastography with optical tweezers

Maxim A. Sirotin, Maria N. Romodina, Evgeny V. Lyubin, Irina V. Soboleva, and Andrey A. Fedyanin

Biomed. Opt. Express 13(1), 14-25 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Automatic retinal nerve fiber bundle tracing based on large field of view polarization sensitive OCT data

Florian Schwarzhans, Sylvia Desissaire, Stefan Steiner, Michael Pircher, Christoph K. Hitzenberger, Hemma Resch, Clemens Vass, and Georg Fischer

Biomed. Opt. Express 13(1), 65-81 (2022)  View: HTML | PDF

Deep convolutional neural network-based scatterer density and resolution estimators in optical coherence tomography

Thitiya Seesan, Ibrahim Abd El-Sadek, Pradipta Mukherjee, Lida Zhu, Kensuke Oikawa, Arata Miyazawa, Larina Tzu-Wei Shen, Satoshi Matsusaka, Prathan Buranasiri, Shuichi Makita, and Yoshiaki Yasuno

Biomed. Opt. Express 13(1), 168-183 (2022)  View: HTML | PDF

Refractive-index matching enhanced polarization sensitive optical coherence tomography quantification in human brain tissue

Chao J. Liu, William Ammon, Robert J. Jones, Jackson Nolan, Ruopeng Wang, Shuaibin Chang, Matthew P. Frosch, Anastasia Yendiki, David A. Boas, Caroline Magnain, Bruce Fischl, and Hui Wang

Biomed. Opt. Express 13(1), 358-372 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

In-vitro study on the identification of gastrointestinal stromal tumor tissues using laser-induced breakdown spectroscopy with chemometric methods

Bushra Sana Idrees, Qianqian Wang, M. Nouman Khan, Geer Teng, Xutai Cui, Wenting Xiangli, and Kai Wei

Biomed. Opt. Express 13(1), 26-38 (2022)  View: HTML | PDF

Study of cerebrovascular reactivity to hypercapnia by imaging photoplethysmography to develop a method for intraoperative assessment of the brain functional reserve

Maxim A. Volynsky, Oleg V. Mamontov, Anastasiia V. Osipchuk, Valery V. Zaytsev, Alexey Y. Sokolov, and Alexei A. Kamshilin

Biomed. Opt. Express 13(1), 184-196 (2022)  View: HTML | PDF

Optical oxygen saturation imaging in cellular ex vivo lung perfusion to assess lobular pulmonary function

Daisuke Sakota, Ryo Kosaka, Hiromichi Niikawa, Katsuhiro Ohuchi, Hirokuni Arai, Kenneth R. McCurry, and Toshihiro Okamoto

Biomed. Opt. Express 13(1), 328-343 (2022)  View: HTML | PDF

Cytotoxicity analysis of oxazine 4-perchlorate fluorescence nerve potential clinical biomarker for guided surgery

Sandra Pampín-Suárez, José Luis Arce-Diego, Olga Tapia, Flor María Pérez-Campo, José Carlos Rodríguez-Rey, and Félix Fanjul-Vélez

Biomed. Opt. Express 13(1), 197-208 (2022)  View: HTML | PDF

Multi-step deep neural network for identifying subfascial vessels in a dorsal skinfold window chamber model

Xuelin Xu, Yi Shen, Li Lin, Lisheng Lin, and Buhong Li

Biomed. Opt. Express 13(1), 426-437 (2022)  View: HTML | PDF

Preliminary study on the osseointegration effects of contactless automated implant cavity preparation via femtosecond laser ablation

Shanshan Liang, Jianqiao Zheng, and Fusong Yuan

Biomed. Opt. Express 13(1), 82-92 (2022)  View: HTML | PDF

Fast hybrid optomechanical scanning photoacoustic remote sensing microscopy for virtual histology

Brendon S. Restall, Brendyn D. Cikaluk, Matthew. T. Martell, Nathaniel J. M. Haven, Rohan Mittal, Sveta Silverman, Lashan Peiris, Jean Deschenes, Benjamin A. Adam, Adam Kinnaird, and Roger J. Zemp

Biomed. Opt. Express 13(1), 39-47 (2022)  View: HTML | PDF

Photoacoustic imaging of periorbital skin cancer ex vivo: unique spectral signatures of malignant melanoma, basal, and squamous cell carcinoma

Magne Tordengren Stridh, Jenny Hult, Aboma Merdasa, John Albinsson, Agnes Pekar-Lukacs, Bodil Gesslein, Ulf Dahlstrand, Karl Engelsberg, Johanna Berggren, Magnus Cinthio, Rafi Sheikh, and Malin Malmsjö

Biomed. Opt. Express 13(1), 410-425 (2022)  View: HTML | PDF

Temperature dependent terahertz spectroscopy and imaging of orthotopic brain gliomas in mouse models

Limin Wu, Yuye Wang, Bin Liao, Lu Zhao, Kai Chen, Meilan Ge, Haibin Li, Tunan Chen, Hua Feng, Degang Xu, and Jianquan Yao

Biomed. Opt. Express 13(1), 93-104 (2022)  View: HTML | PDF

Terahertz circular polarization sensing for protein denaturation based on a twisted dual-layer metasurface

Ziyang Zhang, Fei Fan, Weinan Shi, Tianrui Zhang, and Shengjiang Chang

Biomed. Opt. Express 13(1), 209-221 (2022)  View: HTML | PDF

Molecular pathological recognition of freshly excised human glioma using terahertz ATR spectroscopy

Ning Mu, Chuanyan Yang, Degang Xu, Shi Wang, Kang Ma, Ying Lai, Peiwen Guo, Shuixian Zhang, Yuye Wang, Hua Feng, Tunan Chen, and Jianquan Yao

Biomed. Opt. Express 13(1), 222-236 (2022)  View: HTML | PDF

Real-time calibrating polarization-sensitive diffuse reflectance handheld probe characterizes clinically relevant anatomical locations of oral tissue in vivo

Jianfeng Wang

Biomed. Opt. Express 13(1), 105-116 (2022)  View: HTML | PDF

F-CUBIC: a rapid optical clearing method optimized by quantitative evaluation

Lina Liu, Xianyuan Xia, Feng Xiang, Yufeng Gao, Xi Li, Hui Li, and Wei Zheng

Biomed. Opt. Express 13(1), 237-251 (2022)  View: HTML | PDF

Spatially resolved measurements of ballistic and total transmission in microscale tissue samples from 450 nm to 1624 nm

Aaron T. Mok, Jamien Shea, Chunyan Wu, Fei Xia, Rose Tatarsky, Nilay Yapici, and Chris Xu

Biomed. Opt. Express 13(1), 438-451 (2022)  View: HTML | PDF  [Suppl. Mat. (3)]

Design of a radial multi-offset detection pattern for in vivo phase contrast imaging of the inner retina in humans

Elena Gofas-Salas, Yuhua Rui, Pedro Mecê, Min Zhang, Valerie C. Snyder, Kari V. Vienola, Daniel M. W. Lee, José-Alain Sahel, Kate Grieve, and Ethan A. Rossi

Biomed. Opt. Express 13(1), 117-132 (2022)  View: HTML | PDF  [Suppl. Mat. (4)]

Adaptive optics two-photon excited fluorescence lifetime imaging ophthalmoscopy of photoreceptors and retinal pigment epithelium in the living non-human primate eye

Sarah Walters, James A. Feeks, Khang T. Huynh, and Jennifer J. Hunter

Biomed. Opt. Express 13(1), 389-407 (2022)  View: HTML | PDF

Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publisher’s note

Chen Li, Adele Moatti, Xuying Zhang, H. Troy Ghashghaei, and Alon Greenbaum

Biomed. Opt. Express 13(1), 373-373 (2022)  View: HTML | PDF