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OSA Publishing

1 August 2020, Volume 11, Issue 8, pp. 4052-4847   54 articles

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Microscopy

Coherent Fourier scatterometry reveals nerve fiber crossings in the brain

Biomed. Opt. Express 11(8), 4735-4758 (2020)  View: HTML | PDF

Multimodal Imaging

Resolving tissue chromophore concentration at MRI resolution using multi-wavelength photo-magnetic imaging

Biomed. Opt. Express 11(8), 4244-4254 (2020)  View: HTML | PDF

Optical Diagnostics

Spatial scanning of a sample with two-dimensional angle-resolved low-coherence interferometry for analysis of anisotropic scatterers

Biomed. Opt. Express 11(8), 4419-4430 (2020)  View: HTML | PDF

Vision and Visual Optics

Optical Incoherence Tomography: a method to generate tomographic retinal cross-sections with non-interferometric adaptive optics ophthalmoscopes

Biomed. Opt. Express 11(8), 4069-4084 (2020)  View: HTML | PDF  [Suppl. Mat. (4)]

Diffuse and Fluorescence Tomography

A wide field-of-view, modular, high-density diffuse optical tomography system for minimally constrained three-dimensional functional neuroimaging

Biomed. Opt. Express 11(8), 4110-4129 (2020)  View: HTML | PDF

Image reconstruction for novel time domain near infrared optical tomography: towards clinical applications

Biomed. Opt. Express 11(8), 4723-4734 (2020)  View: HTML | PDF

Endoscopy and Fiber Optics

Two step convolutional neural network for automatic glottis localization and segmentation in stroboscopic videos

Biomed. Opt. Express 11(8), 4695-4713 (2020)  View: HTML | PDF

Deconvolution for multimode fiber imaging: modeling of spatially variant PSF

Biomed. Opt. Express 11(8), 4759-4771 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Microscopy

zOPT: an open source optical projection tomography system and methods for rapid 3D zebrafish imaging

Biomed. Opt. Express 11(8), 4290-4305 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

First experience with spatial frequency domain imaging and red-light excitation of protoporphyrin IX fluorescence during tumor resection

Biomed. Opt. Express 11(8), 4306-4315 (2020)  View: HTML | PDF

High-throughput 3D imaging of single cells with light-sheet fluorescence microscopy on chip

Biomed. Opt. Express 11(8), 4397-4407 (2020)  View: HTML | PDF  [Suppl. Mat. (3)]

Frequency-doubled femtosecond Er-doped fiber laser for two-photon excited fluorescence imaging

Biomed. Opt. Express 11(8), 4431-4442 (2020)  View: HTML | PDF

Mapping metabolism of liver tissue using two-photon FLIM

Biomed. Opt. Express 11(8), 4458-4470 (2020)  View: HTML | PDF

Performance tradeoffs for single- and dual-objective open-top light-sheet microscope designs: a simulation-based analysis

Biomed. Opt. Express 11(8), 4627-4650 (2020)  View: HTML | PDF

Effects of excitation light polarization on fluorescence emission in two-photon light-sheet microscopy

Biomed. Opt. Express 11(8), 4651-4665 (2020)  View: HTML | PDF

Compact and contactless reflectance confocal microscope for neurosurgery

Biomed. Opt. Express 11(8), 4772-4785 (2020)  View: HTML | PDF

In vivo longitudinal visualization of the brain neuroinflammatory response at the cellular level in LysM-GFP mice induced by 3-nitropropionic acid

Biomed. Opt. Express 11(8), 4835-4847 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Molecular Imaging and Nanoparticles

Editors' Pick

Methylene blue-filled biodegradable polymer particles as a contrast agent for optical coherence tomography

Biomed. Opt. Express 11(8), 4255-4274 (2020)  View: HTML | PDF

Optical Biophysics and Photobiology

Changes in temperature inside an optomechanical model of the human eye during emulated transscleral cyclophotocoagulation

Biomed. Opt. Express 11(8), 4548-4559 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Reactive oxygen species explicit dosimetry to predict local tumor growth for Photofrin-mediated photodynamic therapy

Biomed. Opt. Express 11(8), 4586-4601 (2020)  View: HTML | PDF

Optical Biosensors

Waveguide-based surface-enhanced Raman spectroscopy detection of protease activity using non-natural aromatic amino acids

Biomed. Opt. Express 11(8), 4800-4816 (2020)  View: HTML | PDF

Optical Coherence Tomography

Optical coherence tomography for thyroid pathology: 3D analysis of tissue microstructure

Biomed. Opt. Express 11(8), 4130-4149 (2020)  View: HTML | PDF

Visualizing human photoreceptor and retinal pigment epithelium cell mosaics in a single volume scan over an extended field of view with adaptive optics optical coherence tomography

Biomed. Opt. Express 11(8), 4520-4535 (2020)  View: HTML | PDF  [Suppl. Mat. (3)]

Semi-automated registration and segmentation for gingival tissue volume measurement on 3D OCT images

Biomed. Opt. Express 11(8), 4536-4547 (2020)  View: HTML | PDF

Classification of advanced and early stages of diabetic retinopathy from non-diabetic subjects by an ordinary least squares modeling method applied to OCTA images

Biomed. Opt. Express 11(8), 4666-4678 (2020)  View: HTML | PDF

Full-range space-division multiplexing optical coherence tomography angiography

Biomed. Opt. Express 11(8), 4817-4834 (2020)  View: HTML | PDF

Optical Diagnostics

Blood cancer diagnosis using ensemble learning based on a random subspace method in laser-induced breakdown spectroscopy

Biomed. Opt. Express 11(8), 4191-4202 (2020)  View: HTML | PDF

Pathological identification of brain tumors based on the characteristics of molecular fragments generated by laser ablation combined with a spiking neural network

Biomed. Opt. Express 11(8), 4276-4289 (2020)  View: HTML | PDF

Single snapshot spatial frequency domain imaging for risk stratification of diabetes and diabetic foot

Biomed. Opt. Express 11(8), 4471-4483 (2020)  View: HTML | PDF

Deep learning-based cell identification and disease diagnosis using spatio-temporal cellular dynamics in compact digital holographic microscopy

Biomed. Opt. Express 11(8), 4491-4508 (2020)  View: HTML | PDF

Ge on Si waveguide mid-infrared absorption spectroscopy of proteins and their aggregates

Biomed. Opt. Express 11(8), 4714-4722 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Optics in Biotechnology

Lightweight UV-C disinfection system

Biomed. Opt. Express 11(8), 4326-4332 (2020)  View: HTML | PDF

Excitation and emission dual-wavelength confocal metalens designed directly in the biological tissue environment for two-photon micro-endoscopy

Biomed. Opt. Express 11(8), 4408-4418 (2020)  View: HTML | PDF

Photoacoustic Imaging and Spectroscopy

Photoacoustic visualization of the fluence rate dependence of photodynamic therapy

Biomed. Opt. Express 11(8), 4203-4223 (2020)  View: HTML | PDF

Improving vascular imaging with co-planar mutually guided photoacoustic and diffuse optical tomography: a simulation study

Biomed. Opt. Express 11(8), 4333-4347 (2020)  View: HTML | PDF

Photoacoustic imaging of hemodynamic changes in forearm skeletal muscle during cuff occlusion

Biomed. Opt. Express 11(8), 4560-4570 (2020)  View: HTML | PDF

Terahertz Spectroscopy and Imaging

Terahertz spectroscopic diagnosis of early blast-induced traumatic brain injury in rats

Biomed. Opt. Express 11(8), 4085-4098 (2020)  View: HTML | PDF

Evaluation of transdermal drug delivery using terahertz pulsed imaging

Biomed. Opt. Express 11(8), 4484-4490 (2020)  View: HTML | PDF

Tissue Optics and Spectroscopy

Editors' Pick

Feasibility of near-infrared spectroscopy as a tool for anatomical mapping of the human epicardium

Biomed. Opt. Express 11(8), 4099-4109 (2020)  View: HTML | PDF

Model-based evaluation of the microhemodynamic effects of PEGylated HBOC molecules in the rat brain cortex: a laser speckle imaging study

Biomed. Opt. Express 11(8), 4150-4175 (2020)  View: HTML | PDF

Depth-selective data analysis for time-domain fNIRS: moments vs. time windows

Biomed. Opt. Express 11(8), 4224-4243 (2020)  View: HTML | PDF

Performance of measurands in time-domain optical brain imaging: depth selectivity versus contrast-to-noise ratio

Biomed. Opt. Express 11(8), 4348-4365 (2020)  View: HTML | PDF

Direct estimation of the reduced scattering coefficient from experimentally measured time-resolved reflectance via Monte Carlo based lookup tables

Biomed. Opt. Express 11(8), 4366-4378 (2020)  View: HTML | PDF

Second harmonic generation characterization of collagen in whole bone

Biomed. Opt. Express 11(8), 4379-4396 (2020)  View: HTML | PDF

Evaluating β-amyloidosis progression in Alzheimer’s disease with Mueller polarimetry

Biomed. Opt. Express 11(8), 4509-4519 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Characterizing dynamic cerebral vascular reactivity using a hybrid system combining time-resolved near-infrared and diffuse correlation spectroscopy

Biomed. Opt. Express 11(8), 4571-4585 (2020)  View: HTML | PDF

Optimizing infrared spectral discrimination to enhance disease diagnostics: monitoring the signatures of inflammatory bowel diseases with anti-TNFα therapy

Biomed. Opt. Express 11(8), 4679-4694 (2020)  View: HTML | PDF

Hematocrit significantly confounds diffuse correlation spectroscopy measurements of blood flow

Biomed. Opt. Express 11(8), 4786-4799 (2020)  View: HTML | PDF

Vision and Visual Optics

Testing the effect of ocular aberrations in the perceived transverse chromatic aberration

Biomed. Opt. Express 11(8), 4052-4068 (2020)  View: HTML | PDF

Multimodal affine registration for ICGA and MCSL fundus images of high myopia

Biomed. Opt. Express 11(8), 4443-4457 (2020)  View: HTML | PDF

X-ray Microscopy and Imaging

Emphysema quantified: mapping regional airway dimensions using 2D phase contrast X-ray imaging

Biomed. Opt. Express 11(8), 4176-4190 (2020)  View: HTML | PDF

Optical properties of PlatSil SiliGlass tissue-mimicking phantoms: erratum

Biomed. Opt. Express 11(8), 4275-4275 (2020)  View: HTML | PDF

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