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1 February 2020, Volume 11, Issue 2, pp. 517-1215  
47 articles

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Fluorometric optical sensor arrays for the detection of urinary bladder cancer specific volatile organic compounds in the urine of patients with frank hematuria: a prospective case-control study

Simian Zhu, Zhihong Huang, and Ghulam Nabi

Biomed. Opt. Express 11(2), 1175-1185 (2020)  View: HTML | PDF

Hyperspectral imaging enabled by an unmodified smartphone for analyzing skin morphological features and monitoring hemodynamics

Qinghua He and Ruikang Wang

Biomed. Opt. Express 11(2), 895-910 (2020)  View: HTML | PDF

Simple and affordable imaging of multiple physiological parameters with RGB camera-based diffuse reflectance spectroscopy

Izumi Nishidate, Masashi Minakawa, Daniel McDuff, MD. Abdul Wares, Kazuya Nakano, Hideaki Haneishi, Yoshihisa Aizu, and Kyuichi Niizeki

Biomed. Opt. Express 11(2), 1073-1091 (2020)  View: HTML | PDF

Cusp-artifacts in high order superresolution optical fluctuation imaging

Xiyu Yi and Shimon Weiss

Biomed. Opt. Express 11(2), 554-570 (2020)  View: HTML | PDF

Cost-efficient open source laser engine for microscopy

Daniel Schröder, Joran Deschamps, Anindita Dasgupta, Ulf Matti, and Jonas Ries

Biomed. Opt. Express 11(2), 609-623 (2020)  View: HTML | PDF

SOFIevaluator: a strategy for the quantitative quality assessment of SOFI data

Benjamien Moeyaert, Wim Vandenberg, and Peter Dedecker

Biomed. Opt. Express 11(2), 636-648 (2020)  View: HTML | PDF

Improved optical slicing by stimulated emission depletion light sheet microscopy

José Martínez Hernández, Alain Buisson, Irène Wang, and Jean-Claude Vial

Biomed. Opt. Express 11(2), 660-671 (2020)  View: HTML | PDF

Comparing strategies for deep astigmatism-based single-molecule localization microscopy

Marijn Siemons, Bas M. C. Cloin, Desiree M. Salas, Wilco Nijenhuis, Eugene A. Katrukha, and Lukas C. Kapitein

Biomed. Opt. Express 11(2), 735-751 (2020)  View: HTML | PDF

Defocused imaging exploits supercritical-angle fluorescence emission for precise axial single molecule localization microscopy

Philipp Zelger, Lisa Bodner, Lukas Velas, Gerhard J. Schütz, and Alexander Jesacher

Biomed. Opt. Express 11(2), 775-790 (2020)  View: HTML | PDF

New ℓ2 − ℓ0 algorithm for single-molecule localization microscopy

Arne Bechensteen, Laure Blanc-Féraud, and Gilles Aubert

Biomed. Opt. Express 11(2), 1153-1174 (2020)  View: HTML | PDF

Additive-color multi-harmonic generation microscopy for simultaneous label-free differentiation of plaques, tangles, and neuronal axons

Sandeep Chakraborty, Sheng-Tse Chen, Yang-Ting Hsiao, Ming-Jang Chiu, and Chi-Kuang Sun

Biomed. Opt. Express 11(2), 571-585 (2020)  View: HTML | PDF

Miniaturized multimodal multiphoton microscope for simultaneous two-photon and three-photon imaging with a dual-wavelength Er-doped fiber laser

Lin Huang, Xin Zhou, Qihao Liu, Calum E. MacAulay, and Shuo Tang

Biomed. Opt. Express 11(2), 624-635 (2020)  View: HTML | PDF

Tissue imaging depth limit of stimulated Raman scattering microscopy

Andrew H. Hill, Bryce Manifold, and Dan Fu

Biomed. Opt. Express 11(2), 762-774 (2020)  View: HTML | PDF

Inverse scattering for reflection intensity phase microscopy

Alex Matlock, Anne Sentenac, Patrick C. Chaumet, Ji Yi, and Lei Tian

Biomed. Opt. Express 11(2), 911-926 (2020)  View: HTML | PDF

Multiview microscopy of single cells through microstructure-based indirect optical manipulation

Gaszton Vizsnyiczai, András Búzás, Badri Lakshmanrao Aekbote, Tamás Fekete, István Grexa, Pál Ormos, and Lóránd Kelemen

Biomed. Opt. Express 11(2), 945-962 (2020)  View: HTML | PDF  [Suppl. Mat. (6)]

Raster adaptive optics for video rate aberration correction and large FOV multiphoton imaging

Yongxiao Li, Yean J. Lim, Qiongkai Xu, Lynette Beattie, Elizabeth E. Gardiner, Katharina Gaus, William R. Heath, and Woei Ming Lee

Biomed. Opt. Express 11(2), 1032-1042 (2020)  View: HTML | PDF

PhUn-Net: ready-to-use neural network for unwrapping quantitative phase images of biological cells

Gili Dardikman-Yoffe, Darina Roitshtain, Simcha K. Mirsky, Nir A. Turko, Mor Habaza, and Natan T. Shaked

Biomed. Opt. Express 11(2), 1107-1121 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

How many photons are needed for FRET imaging?

Alessandro Esposito

Biomed. Opt. Express 11(2), 1186-1202 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Four-dimensional visualization of zebrafish cardiovascular and vessel dynamics by a structured illumination microscope with electrically tunable lens

Chen Chong, Li Simin, Wen Gang, Liang Yong, Wang Linbo, Yang Guang, Jin Xin, and Li Hui

Biomed. Opt. Express 11(2), 1203-1215 (2020)  View: HTML | PDF  [Suppl. Mat. (7)]

3D tomographic magnetofluorescence imaging of nanodiamonds

Claire-Denise Frese and and Stephan Schiller

Biomed. Opt. Express 11(2), 533-553 (2020)  View: HTML | PDF

Osteoblast differentiation of bone marrow stromal cells by femtosecond laser bone ablation

Jianqiao Zheng, Xinyue Zhang, Yaopeng Zhang, and Fusong Yuan

Biomed. Opt. Express 11(2), 885-894 (2020)  View: HTML | PDF

Vector magnetocardiography measurement with a compact elliptically polarized laser-pumped magnetometer

Wenqiang Zheng, Shengran Su, Guoyi Zhang, Xin Bi, and Qiang Lin

Biomed. Opt. Express 11(2), 649-659 (2020)  View: HTML | PDF

Three-dimensional curvelet-based dictionary learning for speckle noise removal of optical coherence tomography

Mahad Esmaeili, Alireza Mehri Dehnavi, Fedra Hajizadeh, and Hossein Rabbani

Biomed. Opt. Express 11(2), 586-608 (2020)  View: HTML | PDF

Robust, accurate depth-resolved attenuation characterization in optical coherence tomography

Kaiyan Li, Wenxuan Liang, Zihan Yang, Yanmei Liang, and Suiren Wan

Biomed. Opt. Express 11(2), 672-687 (2020)  View: HTML | PDF

Ultra-sensitive optical coherence elastography using a high-dynamic-range force loading scheme for cervical rigidity assessment

Xinwen Yao, Dawei Li, Hyeon-Cheol Park, Defu Chen, Honghua Guan, Mala Mahendroo, and Xingde Li

Biomed. Opt. Express 11(2), 688-698 (2020)  View: HTML | PDF

Editors' Pick

Measurement and visualization of stimulus-evoked tissue dynamics in mouse barrel cortex using phase-sensitive optical coherence tomography

Peijun Tang, Yuandong Li, Adiya Rakymzhan, Zhiying Xie, and Ruikang K. Wang

Biomed. Opt. Express 11(2), 699-710 (2020)  View: HTML | PDF

In vivo imaging of corneal nerves and cellular structures in mice with Gabor-domain optical coherence microscopy

Cristina Canavesi, Andrea Cogliati, Amanda Mietus, Yue Qi, Jesse Schallek, Jannick P. Rolland, and Holly B. Hindman

Biomed. Opt. Express 11(2), 711-724 (2020)  View: HTML | PDF

Spotlight on Optics

Photobiomodulation of lymphatic drainage and clearance: perspective strategy for augmentation of meningeal lymphatic functions

Oxana Semyachkina-Glushkovskaya, Arkady Abdurashitov, Alexander Dubrovsky, Maria Klimova, Ilana Agranovich, Andrey Terskov, Alexander Shirokov, Valeria Vinnik, Anna Kuzmina, Nikita Lezhnev, Inna Blokhina, Anastassia Shnitenkova, Valery Tuchin, Edik Rafailov, and Jurgen Kurths

Biomed. Opt. Express 11(2), 725-734 (2020)  View: HTML | PDF

Noise reduction in optical coherence tomography images using a deep neural network with perceptually-sensitive loss function

Bin Qiu, Zhiyu Huang, Xi Liu, Xiangxi Meng, Yunfei You, Gangjun Liu, Kun Yang, Andreas Maier, Qiushi Ren, and Yanye Lu

Biomed. Opt. Express 11(2), 817-830 (2020)  View: HTML | PDF

Three-dimensional imaging of cell and extracellular matrix elasticity using quantitative micro-elastography

Matt S. Hepburn, Philip Wijesinghe, Luke G. Major, Jiayue Li, Alireza Mowla, Chrissie Astell, Hyun Woo Park, Yongsung Hwang, Yu Suk Choi, and Brendan F. Kennedy

Biomed. Opt. Express 11(2), 867-884 (2020)  View: HTML | PDF

Automated diagnosis and segmentation of choroidal neovascularization in OCT angiography using deep learning

Jie Wang, Tristan T. Hormel, Liqin Gao, Pengxiao Zang, Yukun Guo, Xiaogang Wang, Steven T. Bailey, and Yali Jia

Biomed. Opt. Express 11(2), 927-944 (2020)  View: HTML | PDF

Optical coherence tomography for evaluating capillary waves in blood and plasma

Hsiao-Chuan Liu, Piotr Kijanka, and Matthew W. Urban

Biomed. Opt. Express 11(2), 1092-1106 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Vectorial birefringence imaging by optical coherence microscopy for assessing fibrillar microstructures in the cornea and limbus

Qingyun Li, Karol Karnowski, Gavrielle Untracht, Peter B. Noble, Barry Cense, Martin Villiger, and David D. Sampson

Biomed. Opt. Express 11(2), 1122-1138 (2020)  View: HTML | PDF  [Suppl. Mat. (5)]

Editors' Pick

Deep learning-based single-shot prediction of differential effects of anti-VEGF treatment in patients with diabetic macular edema

Reza Rasti, Michael J. Allingham, Priyatham S. Mettu, Sam Kavusi, Kishan Govind, Scott W. Cousins, and Sina Farsiu

Biomed. Opt. Express 11(2), 1139-1152 (2020)  View: HTML | PDF

Diffraction-based technology for the monitoring of contraction dynamics in 3D and 2D tissue models

Ronan Le Harzic, Ina Meiser, Julia C. Neubauer, Iris Riemann, Michael Schiffer, Frank Stracke, and Heiko Zimmermann

Biomed. Opt. Express 11(2), 517-532 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Diagnosis of methylglyoxal in blood by using far-infrared spectroscopy and o-phenylenediamine derivation

Xu Wu, Yang Dai, Liping Wang, Yan Peng, Lin Lu, Yiming Zhu, Yijue Shi, and Songlin Zhuang

Biomed. Opt. Express 11(2), 963-970 (2020)  View: HTML | PDF

Detection of blackbody radiation during fiber guided laser-tissue vaporization

Paris Franz, Xiaomei Wang, Hui Zhu, Ray Chia, Tom Hasenberg, and Hui Wang

Biomed. Opt. Express 11(2), 791-800 (2020)  View: HTML | PDF

Light-assisted drying for anhydrous preservation of biological samples: optical characterization of the trehalose preservation matrix

Madison A. Young, Daniel P. Furr, Riley Q. McKeough, Gloria D. Elliott, and Susan R. Trammell

Biomed. Opt. Express 11(2), 801-816 (2020)  View: HTML | PDF

GPU-accelerated 3D volumetric X-ray-induced acoustic computed tomography

Donghyun Lee, Eun-Yeong Park, Seongwook Choi, Hyeongsub Kim, Jung-joon Min, Changho Lee, and Chulhong Kim

Biomed. Opt. Express 11(2), 752-761 (2020)  View: HTML | PDF  [Suppl. Mat. (3)]

TGV-regularized inversion of the Radon transform for photoacoustic tomography

Kristian Bredies, Robert Nuster, and Raphael Watschinger

Biomed. Opt. Express 11(2), 994-1019 (2020)  View: HTML | PDF

Automatic recognition of breast invasive ductal carcinoma based on terahertz spectroscopy with wavelet packet transform and machine learning

Wenquan Liu, Rui Zhang, Yu Ling, Hongping Tang, Rongbin She, Guanglu Wei, Xiaojing Gong, and Yuanfu Lu

Biomed. Opt. Express 11(2), 971-981 (2020)  View: HTML | PDF

Qualitative and quantitative detection of liver injury with terahertz time-domain spectroscopy

Yuqi Cao, Pingjie Huang, Jiani Chen, Weiting Ge, Dibo Hou, and Guangxin Zhang

Biomed. Opt. Express 11(2), 982-993 (2020)  View: HTML | PDF

SNR enhancement in brillouin microspectroscopy using spectrum reconstruction

YuChen Xiang, Matthew R. Foreman, and Peter Török

Biomed. Opt. Express 11(2), 1020-1031 (2020)  View: HTML | PDF

Assessment of the brain ischemia during orthostatic stress and lower body negative pressure in air force pilots by near-infrared spectroscopy

Anna Gerega, Stanislaw Wojtkiewicz, Piotr Sawosz, Michal Kacprzak, Beata Toczylowska, Karolina Bejm, Franciszek Skibniewski, Aleksander Sobotnicki, Adam Gacek, Roman Maniewski, and Adam Liebert

Biomed. Opt. Express 11(2), 1043-1060 (2020)  View: HTML | PDF

Raman spectroscopy combined with multivariate analysis to study the biochemical mechanism of lung cancer microwave ablation

Dongliang Song, Fan Yu, Shilin Chen, Yishen Chen, Qingli He, Zhe Zhang, Jingyuan Zhang, and Shuang Wang

Biomed. Opt. Express 11(2), 1061-1072 (2020)  View: HTML | PDF

Quality improvement of adaptive optics retinal images using conditional adversarial networks

Wanyue Li, Guangxing Liu, Yi He, Jing Wang, Wen Kong, and Guohua Shi

Biomed. Opt. Express 11(2), 831-849 (2020)  View: HTML | PDF

Analytical solution of a personalized intraocular lens design for the correction of spherical aberration and coma of a pseudophakic eye

Bruno Chassagne and Lionel Canioni

Biomed. Opt. Express 11(2), 850-866 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

article thumbnail

3D volumetric X-ray-induced acoustic computed tomography of a rod-shaped lead target. See Lee et al. Biomedical Optics Express 11, 752-761 (2020).

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