Convolutional neural network for resolution enhancement and noise reduction in acoustic resolution photoacoustic microscopy

Arunima Sharma and Manojit Pramanik

Biomed. Opt. Express 11(12), 6826-6839 (2020)  View: HTML | PDF

Deep learning approach to improve tangential resolution in photoacoustic tomography

Praveenbalaji Rajendran and Manojit Pramanik

Biomed. Opt. Express 11(12), 7311-7323 (2020)  View: HTML | PDF

Towards ultrahigh resolution OCT based endoscopical pituitary gland and adenoma screening: a performance parameter evaluation

Fabian Placzek, Alexander Micko, Ryan Sentosa, Roger Fonollà, Michael Winklehner, Arthur Hosmann, Marco Andreana, Romana Höftberger, Wolfgang Drexler, Rainer A. Leitgeb, Stefan Wolfsberger, and Angelika Unterhuber

Biomed. Opt. Express 11(12), 7003-7018 (2020)  View: HTML | PDF

Design of an endomicroscope including a resonant fiber-based microprobe dedicated to endoscopic polarimetric imaging for medical diagnosis

Colman Buckley, Marc Fabert, Damien Kinet, Vytautas Kucikas, and Dominique Pagnoux

Biomed. Opt. Express 11(12), 7032-7052 (2020)  View: HTML | PDF

Visualizing topical drug uptake with conventional fluorescence microscopy and deep learning

Conor L. Evans, Maiko Hermsmeier, Akira Yamamoto, and Kin F. Chan

Biomed. Opt. Express 11(12), 6864-6880 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Variance lower bound on fluorescence microscopy image denoising

Yilun Li, Sheng Liu, and Fang Huang

Biomed. Opt. Express 11(12), 6973-6988 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

AOTF-based hyperspectral imaging phase microscopy

Konstantin B. Yushkov, Justine Champagne, Jean-Claude Kastelik, Oleg Yu. Makarov, and Vladimir Ya. Molchanov

Biomed. Opt. Express 11(12), 7053-7061 (2020)  View: HTML | PDF

High-performance imaging of cell-substrate contacts using refractive index quantification microscopy

Ziqiang Xin, Chonglei Zhang, Lixun Sun, Chao Wan, Ting Chen, Houkai Chen, Min Wang, Yijia Wang, Siwei Zhu, and Xiaocong Yuan

Biomed. Opt. Express 11(12), 7096-7108 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Exploiting a holographic polarization microscope for rapid autofocusing and 3D tracking

Leiping Che, Wen Xiao, Feng Pan, and Pietro Ferraro

Biomed. Opt. Express 11(12), 7150-7164 (2020)  View: HTML | PDF

Single full-FOV reconstruction Fourier ptychographic microscopy

Youqiang Zhu, Minglu Sun, Xiong Chen, Hao Li, Quanquan Mu, Dayu Li, and Li Xuan

Biomed. Opt. Express 11(12), 7175-7182 (2020)  View: HTML | PDF

High-NA two-photon single cell imaging with remote focusing using a diffractive tunable lens

Molly A. May, Martin Bawart, Michiel Langeslag, Stefan Bernet, Michaela Kress, Monika Ritsch-Marte, and Alexander Jesacher

Biomed. Opt. Express 11(12), 7183-7191 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

High throughput instrument to screen fluorescent proteins under two-photon excitation

Rosana S. Molina, Jonathan King, Jacob Franklin, Nathan Clack, Christopher McRaven, Vasily Goncharov, Daniel Flickinger, Karel Svoboda, Mikhail Drobizhev, and Thomas E. Hughes

Biomed. Opt. Express 11(12), 7192-7203 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Miniaturized modular-array fluorescence microscopy

Jeonghwan Son, Biagio Mandracchia, and Shu Jia

Biomed. Opt. Express 11(12), 7221-7235 (2020)  View: HTML | PDF  [Suppl. Mat. (2)]

Deep-learning super-resolution light-sheet add-on microscopy (Deep-SLAM) for easy isotropic volumetric imaging of large biological specimens

Fang Zhao, Lanxin Zhu, Chunyu Fang, Tingting Yu, Dan Zhu, and Peng Fei

Biomed. Opt. Express 11(12), 7273-7285 (2020)  View: HTML | PDF

Three-dimensional label-free imaging and quantification of migrating cells during wound healing

Ariel J. Lee, Herve Hugonnet, WeiSun Park, and YongKeun Park

Biomed. Opt. Express 11(12), 6812-6824 (2020)  View: HTML | PDF

Porcine skin damage threshold from mid-infrared optical parametric oscillator radiation at 3.743 µm

Luguang Jiao, Chao Wang, Kaizeng Zhang, Jiarui Wang, and Zaifu Yang

Biomed. Opt. Express 11(12), 7165-7174 (2020)  View: HTML | PDF

Multiple-pulse damage thresholds of retinal explants in the ns-time regime

Scarlett Lipp, Sebastian Kotzur, Philipp Elmlinger, and Wilhelm Stork

Biomed. Opt. Express 11(12), 7299-7310 (2020)  View: HTML | PDF

Multi-layer optical fiber surface plasmon resonance biosensor based on a sandwich structure of polydopamine-MoSe₂@Au nanoparticles-polydopamine

Kun Liu, Jiahang Zhang, Junfeng Jiang, Tianhua Xu, Shuang Wang, Pengxiang Chang, Zhao Zhang, Jinying Ma, and Tiegen Liu

Biomed. Opt. Express 11(12), 6840-6851 (2020)  View: HTML | PDF

Optical difference in the frequency domain to suppress disturbance for wearable electronics

Haicheng Li, Zhouheng Wang, Yu Cao, Yinji Ma, and Xue Feng

Biomed. Opt. Express 11(12), 6920-6932 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Wearable device for remote monitoring of transcutaneous tissue oxygenation

Juan Pedro Cascales, Emmanuel Roussakis, Lilian Witthauer, Avery Goss, Xiaolei Li, Yenyu Chen, Haley L. Marks, and Conor L. Evans

Biomed. Opt. Express 11(12), 6989-7002 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Highly sensitive detection of cytochrome c in the NSCLC serum using a hydrophobic paper based–gold nanourchin substrate

Yue Sun, Shengjie Ge, Jin Xue, Xinyu Zhou, Wenbo Lu, Guang Li, and Xiaowei Cao

Biomed. Opt. Express 11(12), 7062-7078 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Polarization state tracing method to map local birefringent properties in samples using polarization sensitive optical coherence tomography

Peijun Tang and Ruikang K. Wang

Biomed. Opt. Express 11(12), 6852-6863 (2020)  View: HTML | PDF

Generating large field of view en-face projection images from intra-acquisition motion compensated volumetric optical coherence tomography data

Florian Schwarzhans, Sylvia Desissaire, Stefan Steiner, Michael Pircher, Christoph K. Hitzenberger, Hemma Resch, Clemens Vass, and Georg Fischer

Biomed. Opt. Express 11(12), 6881-6904 (2020)  View: HTML | PDF

Quantitative multi-contrast in vivo mouse imaging with polarization diversity optical coherence tomography and angiography

Destiny Hsu, Ji Hoon Kwon, Ringo Ng, Shuichi Makita, Yoshiaki Yasuno, Marinko V. Sarunic, and Myeong Jin Ju

Biomed. Opt. Express 11(12), 6945-6961 (2020)  View: HTML | PDF

Retinal layer thicknesses retrieved with different segmentation algorithms from optical coherence tomography scans acquired under different signal-to-noise ratio conditions

Tuomas Heikka, Barry Cense, and Nomdo M. Jansonius

Biomed. Opt. Express 11(12), 7079-7095 (2020)  View: HTML | PDF

Resolution enhancement and realistic speckle recovery with generative adversarial modeling of micro-optical coherence tomography

Kaicheng Liang, Xinyu Liu, Si Chen, Jun Xie, Wei Qing Lee, Linbo Liu, and Hwee Kuan Lee

Biomed. Opt. Express 11(12), 7236-7252 (2020)  View: HTML | PDF

Deep learning toolbox for automated enhancement, segmentation, and graphing of cortical optical coherence tomography microangiograms

Sabina Stefan and Jonghwan Lee

Biomed. Opt. Express 11(12), 7325-7342 (2020)  View: HTML | PDF

Eye motion correction algorithm for OCT-based corneal topography

Elias Pavlatos, David Huang, and Yan Li

Biomed. Opt. Express 11(12), 7343-7356 (2020)  View: HTML | PDF

Evaluation of commercial virtually imaged phase array and Fabry-Pérot based Brillouin spectrometers for applications to biology

Guqi Yan, Antony Bazir, Jeremie Margueritat, and Thomas Dehoux

Biomed. Opt. Express 11(12), 6933-6944 (2020)  View: HTML | PDF

Raman-based cytopathology: an approach to improve diagnostic accuracy in medullary thyroid carcinoma

Marcos A. Soares de Oliveira, Michael Campbell, Alaa M. Afify, Eric C. Huang, and James W. Chan

Biomed. Opt. Express 11(12), 6962-6972 (2020)  View: HTML | PDF

Rapid and label-free urine test based on surface-enhanced Raman spectroscopy for the non-invasive detection of colorectal cancer at different stages

Jinyong Lin, Zongwei Huang, Xueliang Lin, Qiong Wu, Kerun Quan, Yanming Cheng, Mingzhi Zheng, Jiaying Xu, Yitao Dai, Hejin Qiu, Duo Lin, and Shangyuan Feng

Biomed. Opt. Express 11(12), 7109-7119 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Effect of optical energy modulation on the thermal response of biological tissue: computational and experimental validations

Van Nam Tran, Van Gia Truong, Yong Wook Lee, and Hyun Wook Kang

Biomed. Opt. Express 11(12), 6905-6919 (2020)  View: HTML | PDF

Optimizing deep bone ablation by means of a microsecond Er:YAG laser and a novel water microjet irrigation system

Lina M. Beltrán Bernal, Ferda Canbaz, Antoine Droneau, Niklaus F. Friederich, Philippe C. Cattin, and Azhar Zam

Biomed. Opt. Express 11(12), 7253-7272 (2020)  View: HTML | PDF

Laser-induced optical breakdown effects of micro-lens arrays and diffractive optical elements on ex vivo porcine skin after 1064 nm picosecond laser irradiation

Hyeonsoo Kim, Jewan Kaiser Hwang, Minjung Jung, Jongman Choi, and Hyun Wook Kang

Biomed. Opt. Express 11(12), 7286-7298 (2020)  View: HTML | PDF

Continuous imaging of large-volume tissues with a machinable optical clearing method at subcellular resolution

Can Zhou, Ting Zheng, Ting Luo, Cheng Yan, Qingtao Sun, Miao Ren, Peilin Zhao, Wu Chen, Bingqing Ji, Zhi Wang, Anan Li, Hui Gong, and Xiangning Li

Biomed. Opt. Express 11(12), 7132-7149 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Sustained fatigue assessment during isometric exercises with time-domain near infrared spectroscopy and surface electromyography signals

A. Scano, I. Pirovano, M. E. Manunza, L. Spinelli, D. Contini, A. Torricelli, and R. Re

Biomed. Opt. Express 11(12), 7357-7375 (2020)  View: HTML | PDF

Nasal-temporal asymmetry in peripheral refraction with an aspheric myopia control contact lens

Durgasri Jaisankar, Yongji Liu, Pete Kollbaum, Matt Jaskulski, Paul Gifford, Marwan Suheimat, and David A. Atchison

Biomed. Opt. Express 11(12), 7376-7394 (2020)  View: HTML | PDF

Multicolor fluorescence imaging using a single RGB-IR CMOS sensor for cancer detection with smURFP-labeled probiotics: publisher’s note

Gyungseok Oh, Hong Jun Cho, SeungBeum Suh, Yuhyun Ji, Hak Suk Chung, Deukhee Lee, and Keri Kim

Biomed. Opt. Express 11(12), 7324-7324 (2020)  View: HTML | PDF

Role of pH level on the morphology and growth rate of myelin figures: publisher’s note

Marzieh Allah Panahi, Zahra Tahmasebi, Vahid Abbasian, Mohammad Amiri, and Ali-Reza Moradi

Biomed. Opt. Express 11(12), 6825-6825 (2020)  View: HTML | PDF