Abstract

We present an analysis of imaging murine embryos at various embryonic developmental stages (embryonic day 9.5, 11.5, and 13.5) by optical coherence tomography (OCT) and optical projection tomography (OPT). We demonstrate that while OCT was capable of rapid high-resolution live 3D imaging, its limited penetration depth prevented visualization of deeper structures, particularly in later stage embryos. In contrast, OPT was able to image the whole embryos, but could not be used in vivo because the embryos must be fixed and cleared. Moreover, the fixation process significantly altered the embryo morphology, which was quantified by the volume of the eye-globes before and after fixation. All of these factors should be weighed when determining which imaging modality one should use to achieve particular goals of a study.

© 2016 Optical Society of America

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2016 (1)

C. Wu, N. Sudheendran, M. Singh, I. V. Larina, M. E. Dickinson, and K. V. Larin, “Rotational Imaging OCT for Full-Body Mouse Embryonic Imaging,” J. Biomed. Opt. 21, 026002 (2016).
[Crossref]

2015 (7)

G. Karunamuni, S. Gu, Y. Q. Doughman, A. I. Noonan, A. M. Rollins, M. W. Jenkins, and M. Watanabe, “Using optical coherence tomography to rapidly phenotype and quantify congenital heart defects associated with prenatal alcohol exposure,” Dev. Dyn. 244(4), 607–618 (2015).
[Crossref] [PubMed]

N. Sudheendran, M. Mashiatulla, R. Raghunathan, S. H. Syed, M. E. Dickinson, I. V. Larina, and K. V. Larin, “Quantification of Mouse Embryonic Eye Development with Optical Coherence Tomography In Utero,” J Biomed Photonics Eng 1(1), 90–95 (2015).
[Crossref]

P. M. Kulkarni, N. Rey-Villamizar, A. Merouane, N. Sudheendran, S. Wang, M. Garcia, I. V. Larina, B. Roysam, and K. V. Larin, “Algorithms for improved 3-D reconstruction of live mammalian embryo vasculature from optical coherence tomography data,” Quant. Imaging Med. Surg. 5(1), 125–135 (2015).
[PubMed]

S. H. Syed, A. J. Coughlin, M. D. Garcia, S. Wang, J. L. West, K. V. Larin, and I. V. Larina, “Optical coherence tomography guided microinjections in live mouse embryos: high-resolution targeted manipulation for mouse embryonic research,” J. Biomed. Opt. 20(5), 051020 (2015).
[Crossref] [PubMed]

E. A. Susaki, K. Tainaka, D. Perrin, H. Yukinaga, A. Kuno, and H. R. Ueda, “Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging,” Nat. Protoc. 10(11), 1709–1727 (2015).
[Crossref] [PubMed]

Z. Zhi, W. Qin, J. Wang, W. Wei, and R. K. Wang, “4D optical coherence tomography-based micro-angiography achieved by 1.6-MHz FDML swept source,” Opt. Lett. 40(8), 1779–1782 (2015).
[Crossref] [PubMed]

S. Wang, M. Singh, A. L. Lopez, C. Wu, R. Raghunathan, A. Schill, J. Li, K. V. Larin, and I. V. Larina, “Direct four-dimensional structural and functional imaging of cardiovascular dynamics in mouse embryos with 1.5 MHz optical coherence tomography,” Opt. Lett. 40(20), 4791–4794 (2015).
[Crossref] [PubMed]

2014 (2)

A. Arranz, D. Dong, S. Zhu, C. Savakis, J. Tian, and J. Ripoll, “In-vivo optical tomography of small scattering specimens: time-lapse 3D imaging of the head eversion process in Drosophila melanogaster,” Sci. Rep. 4, 7325 (2014).
[Crossref] [PubMed]

W. Drexler, M. Liu, A. Kumar, T. Kamali, A. Unterhuber, and R. A. Leitgeb, “Optical coherence tomography today: speed, contrast, and multimodality,” J. Biomed. Opt. 19(7), 071412 (2014).
[Crossref] [PubMed]

2013 (6)

M. D. Wong, J. Dazai, J. R. Walls, N. W. Gale, and R. M. Henkelman, “Design and implementation of a custom built optical projection tomography system,” PLoS One 8(9), e73491 (2013).
[Crossref] [PubMed]

N. Sudheendran, S. Bake, R. C. Miranda, and K. V. Larin, “Comparative assessments of the effects of alcohol exposure on fetal brain development using optical coherence tomography and ultrasound imaging,” J. Biomed. Opt. 18(2), 020506 (2013).
[Crossref] [PubMed]

S. Bhat, I. V. Larina, K. V. Larin, M. E. Dickinson, and M. Liebling, “4D reconstruction of the beating embryonic heart from two orthogonal sets of parallel optical coherence tomography slice-sequences,” IEEE Trans. Med. Imaging 32(3), 578–588 (2013).
[Crossref] [PubMed]

D. Zhu, K. V. Larin, Q. Luo, and V. V. Tuchin, “Recent progress in tissue optical clearing,” Laser Photonics Rev. 7(5), 732–757 (2013).
[Crossref] [PubMed]

R. John, S. G. Adie, E. J. Chaney, M. Marjanovic, K. V. Tangella, and S. A. Boppart, “Three-dimensional optical coherence tomography for optical biopsy of lymph nodes and assessment of metastatic disease,” Ann. Surg. Oncol. 20(11), 3685–3693 (2013).
[Crossref] [PubMed]

P. Parasoglou, C. A. Berrios-Otero, B. J. Nieman, and D. H. Turnbull, “High-resolution MRI of early-stage mouse embryos,” NMR Biomed. 26(2), 224–231 (2013).
[Crossref] [PubMed]

2012 (4)

C. Vinegoni, P. Fumene Feruglio, D. Razansky, R. Gorbatov, V. Ntziachristos, A. Sbarbati, M. Nahrendorf, and R. Weissleder, “Mapping molecular agents distributions in whole mice hearts using born-normalized optical projection tomography,” PLoS One 7(4), e34427 (2012).
[Crossref] [PubMed]

I. V. Larina, S. H. Syed, N. Sudheendran, P. A. Overbeek, M. E. Dickinson, and K. V. Larin, “Optical coherence tomography for live phenotypic analysis of embryonic ocular structures in mouse models,” J. Biomed. Opt. 17(8), 081410 (2012).
[Crossref] [PubMed]

I. V. Larina, K. V. Larin, M. E. Dickinson, and M. Liebling, “Sequential Turning Acquisition and Reconstruction (STAR) method for four-dimensional imaging of cyclically moving structures,” Biomed. Opt. Express 3(3), 650–660 (2012).
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L. Chen, J. McGinty, H. B. Taylor, L. Bugeon, J. R. Lamb, M. J. Dallman, and P. M. French, “Incorporation of an experimentally determined MTF for spatial frequency filtering and deconvolution during optical projection tomography reconstruction,” Opt. Express 20(7), 7323–7337 (2012).
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2011 (5)

J. McGinty, H. B. Taylor, L. Chen, L. Bugeon, J. R. Lamb, M. J. Dallman, and P. M. French, “In vivo fluorescence lifetime optical projection tomography,” Biomed. Opt. Express 2(5), 1340–1350 (2011).
[Crossref] [PubMed]

M. Rieckher, U. J. Birk, H. Meyer, J. Ripoll, and N. Tavernarakis, “Microscopic optical projection tomography in vivo,” PLoS One 6(4), e18963 (2011).
[Crossref] [PubMed]

A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt. 16(10), 100502 (2011).
[Crossref] [PubMed]

S. H. Syed, K. V. Larin, M. E. Dickinson, and I. V. Larina, “Optical coherence tomography for high-resolution imaging of mouse development in utero,” J. Biomed. Opt. 16(4), 046004 (2011).
[Crossref] [PubMed]

N. Sudheendran, S. H. Syed, M. E. Dickinson, I. V. Larina, and K. V. Larin, “Speckle variance OCT imaging of the vasculature in live mammalian embryos,” Laser Phys. Lett. 8(3), 247–252 (2011).
[Crossref]

2010 (2)

2009 (3)

C. Vinegoni, L. Fexon, P. F. Feruglio, M. Pivovarov, J. L. Figueiredo, M. Nahrendorf, A. Pozzo, A. Sbarbati, and R. Weissleder, “High throughput transmission optical projection tomography using low cost graphics processing unit,” Opt. Express 17(25), 22320–22332 (2009).
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J. F. Colas and J. Sharpe, “Live optical projection tomography,” Organogenesis 5(4), 211–216 (2009).
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J. Beckers, W. Wurst, and M. H. de Angelis, “Towards better mouse models: enhanced genotypes, systemic phenotyping and envirotype modelling,” Nat. Rev. Genet. 10(6), 371–380 (2009).
[Crossref] [PubMed]

2008 (7)

I. V. Larina, N. Sudheendran, M. Ghosn, J. Jiang, A. Cable, K. V. Larin, and M. E. Dickinson, “Live imaging of blood flow in mammalian embryos using Doppler swept-source optical coherence tomography,” J. Biomed. Opt. 13(6), 060506 (2008).
[Crossref] [PubMed]

J. R. Walls, L. Coultas, J. Rossant, and R. M. Henkelman, “Three-dimensional analysis of vascular development in the mouse embryo,” PLoS One 3(8), e2853 (2008).
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J. McGinty, K. B. Tahir, R. Laine, C. B. Talbot, C. Dunsby, M. A. Neil, L. Quintana, J. Swoger, J. Sharpe, and P. M. French, “Fluorescence lifetime optical projection tomography,” J. Biophotonics 1(5), 390–394 (2008).
[Crossref] [PubMed]

I. V. Larina, E. F. Carbajal, V. V. Tuchin, M. E. Dickinson, and K. V. Larin, “Enhanced OCT imaging of embryonic tissue with optical clearing,” Laser Phys. Lett. 5(6), 476–479 (2008).
[Crossref]

M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Methods 5(7), 609–612 (2008).
[Crossref] [PubMed]

S. Rugonyi, C. Shaut, A. Liu, K. Thornburg, and R. K. Wang, “Changes in wall motion and blood flow in the outflow tract of chick embryonic hearts observed with optical coherence tomography after outflow tract banding and vitelline-vein ligation,” Phys. Med. Biol. 53(18), 5077–5091 (2008).
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A. Mariampillai, B. A. Standish, E. H. Moriyama, M. Khurana, N. R. Munce, M. K. Leung, J. Jiang, A. Cable, B. C. Wilson, I. A. Vitkin, and V. X. Yang, “Speckle variance detection of microvasculature using swept-source optical coherence tomography,” Opt. Lett. 33(13), 1530–1532 (2008).
[Crossref] [PubMed]

2007 (2)

2006 (7)

C. K. Phoon, “Imaging tools for the developmental biologist: ultrasound biomicroscopy of mouse embryonic development,” Pediatr. Res. 60(1), 14–21 (2006).
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S. D. Brown, J. M. Hancock, and H. Gates, “Understanding mammalian genetic systems: the challenge of phenotyping in the mouse,” PLoS Genet. 2(8), e118 (2006).
[Crossref] [PubMed]

W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, “Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system,” J. Biomed. Opt. 11(2), 021014 (2006).
[Crossref] [PubMed]

K. Lee, J. Avondo, H. Morrison, L. Blot, M. Stark, J. Sharpe, A. Bangham, and E. Coen, “Visualizing plant development and gene expression in three dimensions using optical projection tomography,” Plant Cell 18(9), 2145–2156 (2006).
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E. Y. Sidky, C. M. Kao, and X. H. Pan, “Accurate image reconstruction from few-views and limited-angle data in divergent-beam CT,” J. XRay Sci. Technol. 14, 119–139 (2006).

M. W. Jenkins, F. Rothenberg, D. Roy, V. P. Nikolski, Z. Hu, M. Watanabe, D. L. Wilson, I. R. Efimov, and A. M. Rollins, “4D embryonic cardiography using gated optical coherence tomography,” Opt. Express 14(2), 736–748 (2006).
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R. Huber, M. Wojtkowski, and J. G. Fujimoto, “Fourier Domain Mode Locking (FDML): A new laser operating regime and applications for optical coherence tomography,” Opt. Express 14(8), 3225–3237 (2006).
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2005 (1)

I. K. Jang, G. J. Tearney, B. MacNeill, M. Takano, F. Moselewski, N. Iftima, M. Shishkov, S. Houser, H. T. Aretz, E. F. Halpern, and B. E. Bouma, “In vivo characterization of coronary atherosclerotic plaque by use of optical coherence tomography,” Circulation 111(12), 1551–1555 (2005).
[Crossref] [PubMed]

2004 (3)

S. Brekke, E. Tegnander, H. G. Torp, and S. H. Eik-Nes, “Tissue Doppler gated (TDOG) dynamic three-dimensional ultrasound imaging of the fetal heart,” Ultrasound Obstet. Gynecol. 24(2), 192–198 (2004).
[Crossref] [PubMed]

P. F. Escobar, J. L. Belinson, A. White, N. M. Shakhova, F. I. Feldchtein, M. V. Kareta, and N. D. Gladkova, “Diagnostic efficacy of optical coherence tomography in the management of preinvasive and invasive cancer of uterine cervix and vulva,” Int. J. Gynecol. Cancer 14(3), 470–474 (2004).
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J. Sharpe, “Optical projection tomography,” Annu. Rev. Biomed. Eng. 6(1), 209–228 (2004).
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2003 (3)

F. S. Foster, M. Zhang, A. S. Duckett, V. Cucevic, and C. J. Pavlin, “In vivo imaging of embryonic development in the mouse eye by ultrasound biomicroscopy,” Invest. Ophthalmol. Vis. Sci. 44(6), 2361–2366 (2003).
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M. Choma, M. Sarunic, C. Yang, and J. Izatt, “Sensitivity advantage of swept source and Fourier domain optical coherence tomography,” Opt. Express 11(18), 2183–2189 (2003).
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W. Drexler, H. Sattmann, B. Hermann, T. H. Ko, M. Stur, A. Unterhuber, C. Scholda, O. Findl, M. Wirtitsch, J. G. Fujimoto, and A. F. Fercher, “Enhanced visualization of macular pathology with the use of ultrahigh-resolution optical coherence tomography,” Arch. Ophthalmol. 121(5), 695–706 (2003).
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2002 (3)

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: Comparison with intravascular ultrasound,” J. Am. Coll. Cardiol. 39(4), 604–609 (2002).
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T. M. Yelbuz, M. A. Choma, L. Thrane, M. L. Kirby, and J. A. Izatt, “Optical coherence tomography: a new high-resolution imaging technology to study cardiac development in chick embryos,” Circulation 106(22), 2771–2774 (2002).
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J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sørensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science 296(5567), 541–545 (2002).
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2001 (1)

M. Dhenain, S. W. Ruffins, and R. E. Jacobs, “Three-dimensional digital mouse atlas using high-resolution MRI,” Dev. Biol. 232(2), 458–470 (2001).
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2000 (4)

P. M. Nolan, J. Peters, M. Strivens, D. Rogers, J. Hagan, N. Spurr, I. C. Gray, L. Vizor, D. Brooker, E. Whitehill, R. Washbourne, T. Hough, S. Greenaway, M. Hewitt, X. Liu, S. McCormack, K. Pickford, R. Selley, C. Wells, Z. Tymowska-Lalanne, P. Roby, P. Glenister, C. Thornton, C. Thaung, J. A. Stevenson, R. Arkell, P. Mburu, R. Hardisty, A. Kiernan, A. Erven, K. P. Steel, S. Voegeling, J. L. Guenet, C. Nickols, R. Sadri, M. Nasse, A. Isaacs, K. Davies, M. Browne, E. M. Fisher, J. Martin, S. Rastan, S. D. Brown, and J. Hunter, “A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse,” Nat. Genet. 25(4), 440–443 (2000).
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K. Paigen and J. T. Eppig, “A mouse phenome project,” Mamm. Genome 11(9), 715–717 (2000).
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M. J. Paulus, S. S. Gleason, S. J. Kennel, P. R. Hunsicker, and D. K. Johnson, “High resolution X-ray computed tomography: an emerging tool for small animal cancer research,” Neoplasia 2(1-2), 62–70 (2000).
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U. Morgner, W. Drexler, F. X. Kärtner, X. D. Li, C. Pitris, E. P. Ippen, and J. G. Fujimoto, “Spectroscopic optical coherence tomography,” Opt. Lett. 25(2), 111–113 (2000).
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1999 (1)

J. M. Schmitt, S. H. Xiang, and K. M. Yung, “Speckle in optical coherence tomography,” J. Biomed. Opt. 4(1), 95–105 (1999).
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1997 (1)

1995 (1)

C. A. Puliafito, M. R. Hee, C. P. Lin, E. Reichel, J. S. Schuman, J. S. Duker, J. A. Izatt, E. A. Swanson, and J. G. Fujimoto, “Imaging of macular diseases with optical coherence tomography,” Ophthalmology 102(2), 217–229 (1995).
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1994 (1)

B. R. Smith, G. A. Johnson, E. V. Groman, and E. Linney, “Magnetic resonance microscopy of mouse embryos,” Proc. Natl. Acad. Sci. U.S.A. 91(9), 3530–3533 (1994).
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1991 (1)

D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and et, “Optical coherence tomography,” Science 254(5035), 1178–1181 (1991).
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1989 (1)

A. H. Andersen, “Algebraic reconstruction in CT from limited views,” IEEE Trans. Med. Imaging 8(1), 50–55 (1989).
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1983 (1)

M. E. Davison, “The Ill-Conditioned Nature of the Limited Angle Tomography Problem,” SIAM J. Appl. Math. 43(2), 428–448 (1983).
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1979 (2)

T. Inouye, “Image-Reconstruction with Limited Angle Projection Data,” IEEE Trans. Nucl. Sci. 26(2), 2665–2669 (1979).
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A. Boyde and E. Maconnachie, “Volume changes during preparation of mouse embryonic tissue for scanning electron microscopy,” Scanning 2(3), 149–163 (1979).
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1921 (1)

B. M. Patten and R. Philpott, “The shrinkage of embryos in the processes preparatory to sectioning,” Anat. Rec. 20(4), 392–413 (1921).
[Crossref]

Adie, S. G.

R. John, S. G. Adie, E. J. Chaney, M. Marjanovic, K. V. Tangella, and S. A. Boppart, “Three-dimensional optical coherence tomography for optical biopsy of lymph nodes and assessment of metastatic disease,” Ann. Surg. Oncol. 20(11), 3685–3693 (2013).
[Crossref] [PubMed]

Adler, D. C.

Ahlgren, U.

J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sørensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science 296(5567), 541–545 (2002).
[Crossref] [PubMed]

Andersen, A. H.

A. H. Andersen, “Algebraic reconstruction in CT from limited views,” IEEE Trans. Med. Imaging 8(1), 50–55 (1989).
[Crossref] [PubMed]

Aretz, H. T.

I. K. Jang, G. J. Tearney, B. MacNeill, M. Takano, F. Moselewski, N. Iftima, M. Shishkov, S. Houser, H. T. Aretz, E. F. Halpern, and B. E. Bouma, “In vivo characterization of coronary atherosclerotic plaque by use of optical coherence tomography,” Circulation 111(12), 1551–1555 (2005).
[Crossref] [PubMed]

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: Comparison with intravascular ultrasound,” J. Am. Coll. Cardiol. 39(4), 604–609 (2002).
[Crossref] [PubMed]

Arkell, R.

P. M. Nolan, J. Peters, M. Strivens, D. Rogers, J. Hagan, N. Spurr, I. C. Gray, L. Vizor, D. Brooker, E. Whitehill, R. Washbourne, T. Hough, S. Greenaway, M. Hewitt, X. Liu, S. McCormack, K. Pickford, R. Selley, C. Wells, Z. Tymowska-Lalanne, P. Roby, P. Glenister, C. Thornton, C. Thaung, J. A. Stevenson, R. Arkell, P. Mburu, R. Hardisty, A. Kiernan, A. Erven, K. P. Steel, S. Voegeling, J. L. Guenet, C. Nickols, R. Sadri, M. Nasse, A. Isaacs, K. Davies, M. Browne, E. M. Fisher, J. Martin, S. Rastan, S. D. Brown, and J. Hunter, “A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse,” Nat. Genet. 25(4), 440–443 (2000).
[Crossref] [PubMed]

Arranz, A.

A. Arranz, D. Dong, S. Zhu, C. Savakis, J. Tian, and J. Ripoll, “In-vivo optical tomography of small scattering specimens: time-lapse 3D imaging of the head eversion process in Drosophila melanogaster,” Sci. Rep. 4, 7325 (2014).
[Crossref] [PubMed]

Avondo, J.

K. Lee, J. Avondo, H. Morrison, L. Blot, M. Stark, J. Sharpe, A. Bangham, and E. Coen, “Visualizing plant development and gene expression in three dimensions using optical projection tomography,” Plant Cell 18(9), 2145–2156 (2006).
[Crossref] [PubMed]

Bake, S.

N. Sudheendran, S. Bake, R. C. Miranda, and K. V. Larin, “Comparative assessments of the effects of alcohol exposure on fetal brain development using optical coherence tomography and ultrasound imaging,” J. Biomed. Opt. 18(2), 020506 (2013).
[Crossref] [PubMed]

Baldock, R.

J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sørensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science 296(5567), 541–545 (2002).
[Crossref] [PubMed]

Bangham, A.

K. Lee, J. Avondo, H. Morrison, L. Blot, M. Stark, J. Sharpe, A. Bangham, and E. Coen, “Visualizing plant development and gene expression in three dimensions using optical projection tomography,” Plant Cell 18(9), 2145–2156 (2006).
[Crossref] [PubMed]

Barton, J. K.

Bassi, A.

A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt. 16(10), 100502 (2011).
[Crossref] [PubMed]

Beckers, J.

J. Beckers, W. Wurst, and M. H. de Angelis, “Towards better mouse models: enhanced genotypes, systemic phenotyping and envirotype modelling,” Nat. Rev. Genet. 10(6), 371–380 (2009).
[Crossref] [PubMed]

Belding, J.

Belinson, J. L.

P. F. Escobar, J. L. Belinson, A. White, N. M. Shakhova, F. I. Feldchtein, M. V. Kareta, and N. D. Gladkova, “Diagnostic efficacy of optical coherence tomography in the management of preinvasive and invasive cancer of uterine cervix and vulva,” Int. J. Gynecol. Cancer 14(3), 470–474 (2004).
[Crossref] [PubMed]

Berrios-Otero, C. A.

P. Parasoglou, C. A. Berrios-Otero, B. J. Nieman, and D. H. Turnbull, “High-resolution MRI of early-stage mouse embryos,” NMR Biomed. 26(2), 224–231 (2013).
[Crossref] [PubMed]

Bhat, S.

S. Bhat, I. V. Larina, K. V. Larin, M. E. Dickinson, and M. Liebling, “4D reconstruction of the beating embryonic heart from two orthogonal sets of parallel optical coherence tomography slice-sequences,” IEEE Trans. Med. Imaging 32(3), 578–588 (2013).
[Crossref] [PubMed]

Biedermann, B. R.

Birk, U. J.

M. Rieckher, U. J. Birk, H. Meyer, J. Ripoll, and N. Tavernarakis, “Microscopic optical projection tomography in vivo,” PLoS One 6(4), e18963 (2011).
[Crossref] [PubMed]

Blot, L.

K. Lee, J. Avondo, H. Morrison, L. Blot, M. Stark, J. Sharpe, A. Bangham, and E. Coen, “Visualizing plant development and gene expression in three dimensions using optical projection tomography,” Plant Cell 18(9), 2145–2156 (2006).
[Crossref] [PubMed]

Boot, M. J.

M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Methods 5(7), 609–612 (2008).
[Crossref] [PubMed]

Boppart, S. A.

R. John, S. G. Adie, E. J. Chaney, M. Marjanovic, K. V. Tangella, and S. A. Boppart, “Three-dimensional optical coherence tomography for optical biopsy of lymph nodes and assessment of metastatic disease,” Ann. Surg. Oncol. 20(11), 3685–3693 (2013).
[Crossref] [PubMed]

W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, “Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system,” J. Biomed. Opt. 11(2), 021014 (2006).
[Crossref] [PubMed]

Bouma, B. E.

I. K. Jang, G. J. Tearney, B. MacNeill, M. Takano, F. Moselewski, N. Iftima, M. Shishkov, S. Houser, H. T. Aretz, E. F. Halpern, and B. E. Bouma, “In vivo characterization of coronary atherosclerotic plaque by use of optical coherence tomography,” Circulation 111(12), 1551–1555 (2005).
[Crossref] [PubMed]

I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, “Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: Comparison with intravascular ultrasound,” J. Am. Coll. Cardiol. 39(4), 604–609 (2002).
[Crossref] [PubMed]

Boyde, A.

A. Boyde and E. Maconnachie, “Volume changes during preparation of mouse embryonic tissue for scanning electron microscopy,” Scanning 2(3), 149–163 (1979).
[Crossref]

Brekke, S.

S. Brekke, E. Tegnander, H. G. Torp, and S. H. Eik-Nes, “Tissue Doppler gated (TDOG) dynamic three-dimensional ultrasound imaging of the fetal heart,” Ultrasound Obstet. Gynecol. 24(2), 192–198 (2004).
[Crossref] [PubMed]

Brooker, D.

P. M. Nolan, J. Peters, M. Strivens, D. Rogers, J. Hagan, N. Spurr, I. C. Gray, L. Vizor, D. Brooker, E. Whitehill, R. Washbourne, T. Hough, S. Greenaway, M. Hewitt, X. Liu, S. McCormack, K. Pickford, R. Selley, C. Wells, Z. Tymowska-Lalanne, P. Roby, P. Glenister, C. Thornton, C. Thaung, J. A. Stevenson, R. Arkell, P. Mburu, R. Hardisty, A. Kiernan, A. Erven, K. P. Steel, S. Voegeling, J. L. Guenet, C. Nickols, R. Sadri, M. Nasse, A. Isaacs, K. Davies, M. Browne, E. M. Fisher, J. Martin, S. Rastan, S. D. Brown, and J. Hunter, “A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse,” Nat. Genet. 25(4), 440–443 (2000).
[Crossref] [PubMed]

Brown, S. D.

S. D. Brown, J. M. Hancock, and H. Gates, “Understanding mammalian genetic systems: the challenge of phenotyping in the mouse,” PLoS Genet. 2(8), e118 (2006).
[Crossref] [PubMed]

P. M. Nolan, J. Peters, M. Strivens, D. Rogers, J. Hagan, N. Spurr, I. C. Gray, L. Vizor, D. Brooker, E. Whitehill, R. Washbourne, T. Hough, S. Greenaway, M. Hewitt, X. Liu, S. McCormack, K. Pickford, R. Selley, C. Wells, Z. Tymowska-Lalanne, P. Roby, P. Glenister, C. Thornton, C. Thaung, J. A. Stevenson, R. Arkell, P. Mburu, R. Hardisty, A. Kiernan, A. Erven, K. P. Steel, S. Voegeling, J. L. Guenet, C. Nickols, R. Sadri, M. Nasse, A. Isaacs, K. Davies, M. Browne, E. M. Fisher, J. Martin, S. Rastan, S. D. Brown, and J. Hunter, “A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse,” Nat. Genet. 25(4), 440–443 (2000).
[Crossref] [PubMed]

Browne, M.

P. M. Nolan, J. Peters, M. Strivens, D. Rogers, J. Hagan, N. Spurr, I. C. Gray, L. Vizor, D. Brooker, E. Whitehill, R. Washbourne, T. Hough, S. Greenaway, M. Hewitt, X. Liu, S. McCormack, K. Pickford, R. Selley, C. Wells, Z. Tymowska-Lalanne, P. Roby, P. Glenister, C. Thornton, C. Thaung, J. A. Stevenson, R. Arkell, P. Mburu, R. Hardisty, A. Kiernan, A. Erven, K. P. Steel, S. Voegeling, J. L. Guenet, C. Nickols, R. Sadri, M. Nasse, A. Isaacs, K. Davies, M. Browne, E. M. Fisher, J. Martin, S. Rastan, S. D. Brown, and J. Hunter, “A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse,” Nat. Genet. 25(4), 440–443 (2000).
[Crossref] [PubMed]

Bugeon, L.

Cable, A.

A. Mariampillai, B. A. Standish, E. H. Moriyama, M. Khurana, N. R. Munce, M. K. Leung, J. Jiang, A. Cable, B. C. Wilson, I. A. Vitkin, and V. X. Yang, “Speckle variance detection of microvasculature using swept-source optical coherence tomography,” Opt. Lett. 33(13), 1530–1532 (2008).
[Crossref] [PubMed]

I. V. Larina, N. Sudheendran, M. Ghosn, J. Jiang, A. Cable, K. V. Larin, and M. E. Dickinson, “Live imaging of blood flow in mammalian embryos using Doppler swept-source optical coherence tomography,” J. Biomed. Opt. 13(6), 060506 (2008).
[Crossref] [PubMed]

Carbajal, E. F.

I. V. Larina, E. F. Carbajal, V. V. Tuchin, M. E. Dickinson, and K. V. Larin, “Enhanced OCT imaging of embryonic tissue with optical clearing,” Laser Phys. Lett. 5(6), 476–479 (2008).
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Chaney, E. J.

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Li, J.

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Liebling, M.

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Supplementary Material (4)

NameDescription
» Visualization 1: MP4 (8147 KB)      OCT and OPT image of the E9.5 embryo
» Visualization 2: MP4 (2103 KB)      OCT and OPT image of the E11.5 embryo
» Visualization 3: MP4 (2380 KB)      OCT and OPT image of the E13.5 embryo
» Visualization 4: MP4 (18003 KB)      example of live imaging of an E9.5 embryo

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Figures (9)

Fig. 1
Fig. 1

OCT system schematic. BPD: balanced photodetector; PC: polarization controller; C: collimator; VA: variable attenuator; RM: reference mirror; DM: dichroic mirror.

Fig. 2
Fig. 2

OPT system schematic.

Fig. 3
Fig. 3

Transverse resolutions of the (a-c) OCT and (d-f) OPT systems as determined by a US Air Force resolution target. (a,d) View of the resolution target, (b,e) magnified region which is outlined in (a,d), and (c,f) transverse intensity profile of the yellow line in (b,e) with a line width of ~16 µm and ~3.5 µm, respectively.

Fig. 4
Fig. 4

Axial resolutions of the (a,b) OCT system and (c-e) OPT system. (a) OCT image of a mirror and (b) axial intensity profile of the yellow line in (a). The width at the −3dB corners was ~12 µm. (c) OPT reconstruction of tungsten rod, 5 µm microsphere embedded in agar, and extrapolated diameter of the rod used for obtaining the intensity profile of the microsphere in the axial direction. (d) Zoomed in view of the microsphere highlighted in (c). (e) Intensity profile of the yellow line in (d), where the FWHM was ~7.5 µm.

Fig. 5
Fig. 5

OCT axial scans from an image of a mirror with 74 dB attenuation (double pass) filter in the sample arm. The reference arm was translated at 500 µm increments. The sensitivity after addition of the attenuation is noted for each optical path difference.

Fig. 6
Fig. 6

(a-c) OCT and (d-f) OPT images of the same E9.5 murine embryo (see Visualization 1).

Fig. 7
Fig. 7

(a-d) OCT and (e-h) OPT images of the E11.5 embryo (see Visualization 2).

Fig. 8
Fig. 8

The same E13.5 murine embryo as imaged by the (a-d) OCT and (e-h) OPT systems (see Visualization 3).

Fig. 9
Fig. 9

Eye volumes of the E11.5 (n = 9) and E13.5 (n = 12) embryos quantified by modeling the eye-globe as an oblate spheroid and measuring the major and minor axes. Error bars represent the inter-embryo standard deviation for the respective embryonic stage and imaging modality. Statistical testing was performed by a Mann-Whitney test.

Tables (3)

Tables Icon

Table 1 Summary of OPT system optical parameters.

Tables Icon

Table 2 Summary of OPT acquisition parameters

Tables Icon

Table 3 SNR of the OCT and OPT systems calculated from the embryo images.

Equations (1)

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V= 4 3 π a 2 c

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