Abstract

Image recovery in diffuse optical tomography (DOT) of the human brain often relies on accurate models of light propagation within the head. In the absence of subject specific models for image reconstruction, the use of atlas based models are showing strong promise. Although there exists some understanding in the use of some limited rigid model registrations in DOT, there has been a lack of a detailed analysis between errors in geometrical accuracy, light propagation in tissue and subsequent errors in dynamic imaging of recovered focal activations in the brain. In this work 11 different rigid registration algorithms, across 24 simulated subjects, are evaluated for DOT studies in the visual cortex. Although there exists a strong correlation (R2 = 0.97) between geometrical surface error and internal light propagation errors, the overall variation is minimal when analysing recovered focal activations in the visual cortex. While a subject specific mesh gives the best results with a 1.2 mm average location error, no single algorithm provides errors greater than 4.5 mm. This work demonstrates that the use of rigid algorithms for atlas based imaging is a promising route when subject specific models are not available.

© 2014 Optical Society of America

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2014 (4)

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
[Crossref] [PubMed]

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
[Crossref] [PubMed]

S. L. Ferradal, A. T. Eggebrecht, M. Hassanpour, A. Z. Snyder, and J. P. Culver, “Atlas-based head modeling and spatial normalization for high-density diffuse optical tomography: in vivo validation against fMRI,” Neuroimage 85(Pt 1), 117–126 (2014).
[Crossref] [PubMed]

P. Giacometti, K. L. Perdue, and S. G. Diamond, “Algorithm to find high density EEG scalp coordinates and analysis of their correspondence to structural and functional regions of the brain,” J. Neurosci. Methods 229, 84–96 (2014).
[Crossref] [PubMed]

2013 (1)

M. Jermyn, H. Ghadyani, M. A. Mastanduno, W. Turner, S. C. Davis, H. Dehghani, and B. W. Pogue, “Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography,” J. Biomed. Opt. 18(8), 086007 (2013).
[Crossref] [PubMed]

2012 (5)

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
[Crossref] [PubMed]

S. M. Liao, S. L. Ferradal, B. R. White, N. Gregg, T. E. Inder, and J. P. Culver, “High-density diffuse optical tomography of term infant visual cortex in the nursery,” J. Biomed. Opt. 17(8), 081414 (2012).
[Crossref] [PubMed]

Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front. Neuroenergetics 4, 6 (2012).
[Crossref] [PubMed]

2011 (1)

F. H. Tian, H. J. Niu, B. Khan, G. Alexandrakis, K. Behbehani, and H. L. Liu, “Enhanced Functional Brain Imaging by Using Adaptive Filtering and a Depth Compensation Algorithm in Diffuse Optical Tomography,” IEEE Trans. Med. Imaging 30(6), 1239–1251 (2011).
[Crossref] [PubMed]

2010 (3)

S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

B. R. White and J. P. Culver, “Quantitative evaluation of high-density diffuse optical tomography: in vivo resolution and mapping performance,” J. Biomed. Opt. 15(2), 026006 (2010).
[Crossref] [PubMed]

A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
[Crossref] [PubMed]

2009 (4)

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage 47(1), 148–156 (2009).
[Crossref] [PubMed]

H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt. 48(10), D137–D143 (2009).
[Crossref] [PubMed]

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

2007 (2)

V. Jurcak, D. Tsuzuki, and I. Dan, “10/20, 10/10, and 10/5 systems revisited: their validity as relative head-surface-based positioning systems,” Neuroimage 34(4), 1600–1611 (2007).
[Crossref] [PubMed]

B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A. 104(29), 12169–12174 (2007).
[Crossref] [PubMed]

2006 (2)

D. K. Joseph, T. J. Huppert, M. A. Franceschini, and D. A. Boas, “Diffuse optical tomography system to image brain activation with improved spatial resolution and validation with functional magnetic resonance imaging,” Appl. Opt. 45(31), 8142–8151 (2006).
[Crossref] [PubMed]

T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
[Crossref] [PubMed]

2005 (3)

D. A. Boas and A. M. Dale, “Simulation study of magnetic resonance imaging-guided cortically constrained diffuse optical tomography of human brain function,” Appl. Opt. 44(10), 1957–1968 (2005).
[Crossref] [PubMed]

A. K. Singh, M. Okamoto, H. Dan, V. Jurcak, and I. Dan, “Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI,” Neuroimage 27(4), 842–851 (2005).
[Crossref] [PubMed]

B. A. Ardekani, S. Guckemus, A. Bachman, M. J. Hoptman, M. Wojtaszek, and J. Nierenberg, “Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans,” J. Neurosci. Methods 142(1), 67–76 (2005).
[Crossref] [PubMed]

2004 (3)

W. R. Crum, T. Hartkens, and D. L. G. Hill, “Non-rigid image registration: theory and practice,” Br. J. Radiol. 77(2), S140–S153 (2004).
[Crossref] [PubMed]

D. A. Boas, A. M. Dale, and M. A. Franceschini, “Diffuse optical imaging of brain activation: approaches to optimizing image sensitivity, resolution, and accuracy,” Neuroimage 23(Suppl 1), S275–S288 (2004).
[Crossref] [PubMed]

T. Durduran, G. Yu, M. G. Burnett, J. A. Detre, J. H. Greenberg, J. Wang, C. Zhou, and A. G. Yodh, “Diffuse optical measurement of blood flow, blood oxygenation, and metabolism in a human brain during sensorimotor cortex activation,” Opt. Lett. 29(15), 1766–1768 (2004).
[Crossref] [PubMed]

2003 (4)

U. Herwig, P. Satrapi, and C. Schönfeldt-Lecuona, “Using the International 10-20 EEG system for positioning of transcranial magnetic stimulation,” Brain Topogr. 16(2), 95–99 (2003).
[Crossref] [PubMed]

G. Strangman, M. A. Franceschini, and D. A. Boas, “Factors affecting the accuracy of near-infrared spectroscopy concentration calculations for focal changes in oxygenation parameters,” Neuroimage 18(4), 865–879 (2003).
[Crossref] [PubMed]

J. P. Culver, T. Durduran, D. Furuya, C. Cheung, J. H. Greenberg, and A. G. Yodh, “Diffuse optical tomography of cerebral blood flow, oxygenation, and metabolism in rat during focal ischemia,” J. Cereb. Blood Flow Metab. 23(8), 911–924 (2003).
[Crossref] [PubMed]

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

2002 (2)

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
[Crossref] [PubMed]

D. Chetverikov, D. Svirko, D. Stepanov, and P. Krsek, “The trimmed iterative closest point algorithm,” Int. C Patt. Recog. 3, 545–548 (2002).
[Crossref]

2001 (7)

Y. Pei, H. L. Graber, and R. L. Barbour, “Influence of Systematic Errors in Reference States on Image Quality and on Stability of Derived Information for dc Optical Imaging,” Appl. Opt. 40(31), 5755–5769 (2001).
[Crossref] [PubMed]

J. B. West, J. M. Fitzpatrick, S. A. Toms, C. R. Maurer, and R. J. Maciunas, “Fiducial point placement and the accuracy of point-based, rigid body registration,” Neurosurgery 48(4), 810–816 (2001).
[PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

A. Bluestone, G. Abdoulaev, C. Schmitz, R. Barbour, and A. Hielscher, “Three-dimensional optical tomography of hemodynamics in the human head,” Opt. Express 9(6), 272–286 (2001).
[Crossref] [PubMed]

D. A. Boas, T. Gaudette, G. Strangman, X. Cheng, J. J. Marota, and J. B. Mandeville, “The accuracy of near infrared spectroscopy and imaging during focal changes in cerebral hemodynamics,” Neuroimage 13(1), 76–90 (2001).
[Crossref] [PubMed]

S. R. Hintz, D. A. Benaron, A. M. Siegel, A. Zourabian, D. K. Stevenson, and D. A. Boas, “Bedside functional imaging of the premature infant brain during passive motor activation,” J. Perinat. Med. 29(4), 335–343 (2001).
[Crossref] [PubMed]

1999 (2)

F. Bevilacqua, D. Piguet, P. Marquet, J. D. Gross, B. J. Tromberg, and C. Depeursinge, “In vivo local determination of tissue optical properties: applications to human brain,” Appl. Opt. 38(22), 4939–4950 (1999).
[Crossref] [PubMed]

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
[Crossref] [PubMed]

1998 (1)

H. J. Huppertz, M. Otte, C. Grimm, R. Kristeva-Feige, T. Mergner, and C. H. Lücking, “Estimation of the accuracy of a surface matching technique for registration of EEG and MRI data,” Electroencephalogr. Clin. Neurophysiol. 106(5), 409–415 (1998).
[Crossref] [PubMed]

1997 (2)

C. R. Maurer, J. M. Fitzpatrick, M. Y. Wang, R. L. Galloway, R. J. Maciunas, and G. S. Allen, “Registration of Head Volume Images Using Implantable Fiducial Markers,” IEEE Trans. Med. Imaging 16(4), 447–462 (1997).
[Crossref] [PubMed]

E. Gratton, S. Fantini, M. A. Franceschini, G. Gratton, and M. Fabiani, “Measurements of scattering and absorption changes in muscle and brain,” Philos. Trans. R. Soc. Lond. B Biol. Sci. 352(1354), 727–735 (1997).
[Crossref] [PubMed]

Abdoulaev, G.

Alexandrakis, G.

F. H. Tian, H. J. Niu, B. Khan, G. Alexandrakis, K. Behbehani, and H. L. Liu, “Enhanced Functional Brain Imaging by Using Adaptive Filtering and a Depth Compensation Algorithm in Diffuse Optical Tomography,” IEEE Trans. Med. Imaging 30(6), 1239–1251 (2011).
[Crossref] [PubMed]

Allen, G. S.

C. R. Maurer, J. M. Fitzpatrick, M. Y. Wang, R. L. Galloway, R. J. Maciunas, and G. S. Allen, “Registration of Head Volume Images Using Implantable Fiducial Markers,” IEEE Trans. Med. Imaging 16(4), 447–462 (1997).
[Crossref] [PubMed]

Amunts, K.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Andersson, J.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Ardekani, B. A.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

B. A. Ardekani, S. Guckemus, A. Bachman, M. J. Hoptman, M. Wojtaszek, and J. Nierenberg, “Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans,” J. Neurosci. Methods 142(1), 67–76 (2005).
[Crossref] [PubMed]

Arridge, S. R.

T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
[Crossref] [PubMed]

Ashburner, J.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Austin, T.

T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
[Crossref] [PubMed]

Avants, B.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Bachman, A.

B. A. Ardekani, S. Guckemus, A. Bachman, M. J. Hoptman, M. Wojtaszek, and J. Nierenberg, “Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans,” J. Neurosci. Methods 142(1), 67–76 (2005).
[Crossref] [PubMed]

Barbour, R.

Barbour, R. L.

Behbehani, K.

F. H. Tian, H. J. Niu, B. Khan, G. Alexandrakis, K. Behbehani, and H. L. Liu, “Enhanced Functional Brain Imaging by Using Adaptive Filtering and a Depth Compensation Algorithm in Diffuse Optical Tomography,” IEEE Trans. Med. Imaging 30(6), 1239–1251 (2011).
[Crossref] [PubMed]

Benaron, D. A.

S. R. Hintz, D. A. Benaron, A. M. Siegel, A. Zourabian, D. K. Stevenson, and D. A. Boas, “Bedside functional imaging of the premature infant brain during passive motor activation,” J. Perinat. Med. 29(4), 335–343 (2001).
[Crossref] [PubMed]

Bevilacqua, F.

Bluestone, A.

Boas, D. A.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
[Crossref] [PubMed]

D. K. Joseph, T. J. Huppert, M. A. Franceschini, and D. A. Boas, “Diffuse optical tomography system to image brain activation with improved spatial resolution and validation with functional magnetic resonance imaging,” Appl. Opt. 45(31), 8142–8151 (2006).
[Crossref] [PubMed]

D. A. Boas and A. M. Dale, “Simulation study of magnetic resonance imaging-guided cortically constrained diffuse optical tomography of human brain function,” Appl. Opt. 44(10), 1957–1968 (2005).
[Crossref] [PubMed]

D. A. Boas, A. M. Dale, and M. A. Franceschini, “Diffuse optical imaging of brain activation: approaches to optimizing image sensitivity, resolution, and accuracy,” Neuroimage 23(Suppl 1), S275–S288 (2004).
[Crossref] [PubMed]

G. Strangman, M. A. Franceschini, and D. A. Boas, “Factors affecting the accuracy of near-infrared spectroscopy concentration calculations for focal changes in oxygenation parameters,” Neuroimage 18(4), 865–879 (2003).
[Crossref] [PubMed]

S. R. Hintz, D. A. Benaron, A. M. Siegel, A. Zourabian, D. K. Stevenson, and D. A. Boas, “Bedside functional imaging of the premature infant brain during passive motor activation,” J. Perinat. Med. 29(4), 335–343 (2001).
[Crossref] [PubMed]

D. A. Boas, T. Gaudette, G. Strangman, X. Cheng, J. J. Marota, and J. B. Mandeville, “The accuracy of near infrared spectroscopy and imaging during focal changes in cerebral hemodynamics,” Neuroimage 13(1), 76–90 (2001).
[Crossref] [PubMed]

Boomsma, D.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Branco, G.

T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
[Crossref] [PubMed]

Burnett, M. G.

Caffini, M.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

Cannon, T.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Carpenter, C. M.

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

Chance, B.

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

Chen, C.

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

Cheng, X.

D. A. Boas, T. Gaudette, G. Strangman, X. Cheng, J. J. Marota, and J. B. Mandeville, “The accuracy of near infrared spectroscopy and imaging during focal changes in cerebral hemodynamics,” Neuroimage 13(1), 76–90 (2001).
[Crossref] [PubMed]

Chetverikov, D.

D. Chetverikov, D. Svirko, D. Stepanov, and P. Krsek, “The trimmed iterative closest point algorithm,” Int. C Patt. Recog. 3, 545–548 (2002).
[Crossref]

Cheung, C.

J. P. Culver, T. Durduran, D. Furuya, C. Cheung, J. H. Greenberg, and A. G. Yodh, “Diffuse optical tomography of cerebral blood flow, oxygenation, and metabolism in rat during focal ischemia,” J. Cereb. Blood Flow Metab. 23(8), 911–924 (2003).
[Crossref] [PubMed]

Chiang, M. C.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Choe, R.

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

Christensen, G. E.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Cohen, A. L.

B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage 47(1), 148–156 (2009).
[Crossref] [PubMed]

Collins, D. L.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Collins, L.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Cooper, R. J.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

Crum, W. R.

W. R. Crum, T. Hartkens, and D. L. G. Hill, “Non-rigid image registration: theory and practice,” Br. J. Radiol. 77(2), S140–S153 (2004).
[Crossref] [PubMed]

Culver, J. P.

S. L. Ferradal, A. T. Eggebrecht, M. Hassanpour, A. Z. Snyder, and J. P. Culver, “Atlas-based head modeling and spatial normalization for high-density diffuse optical tomography: in vivo validation against fMRI,” Neuroimage 85(Pt 1), 117–126 (2014).
[Crossref] [PubMed]

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
[Crossref] [PubMed]

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

S. M. Liao, S. L. Ferradal, B. R. White, N. Gregg, T. E. Inder, and J. P. Culver, “High-density diffuse optical tomography of term infant visual cortex in the nursery,” J. Biomed. Opt. 17(8), 081414 (2012).
[Crossref] [PubMed]

Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front. Neuroenergetics 4, 6 (2012).
[Crossref] [PubMed]

B. R. White and J. P. Culver, “Quantitative evaluation of high-density diffuse optical tomography: in vivo resolution and mapping performance,” J. Biomed. Opt. 15(2), 026006 (2010).
[Crossref] [PubMed]

B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage 47(1), 148–156 (2009).
[Crossref] [PubMed]

H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt. 48(10), D137–D143 (2009).
[Crossref] [PubMed]

B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A. 104(29), 12169–12174 (2007).
[Crossref] [PubMed]

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

J. P. Culver, T. Durduran, D. Furuya, C. Cheung, J. H. Greenberg, and A. G. Yodh, “Diffuse optical tomography of cerebral blood flow, oxygenation, and metabolism in rat during focal ischemia,” J. Cereb. Blood Flow Metab. 23(8), 911–924 (2003).
[Crossref] [PubMed]

Custo, A.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
[Crossref] [PubMed]

Dale, A. M.

D. A. Boas and A. M. Dale, “Simulation study of magnetic resonance imaging-guided cortically constrained diffuse optical tomography of human brain function,” Appl. Opt. 44(10), 1957–1968 (2005).
[Crossref] [PubMed]

D. A. Boas, A. M. Dale, and M. A. Franceschini, “Diffuse optical imaging of brain activation: approaches to optimizing image sensitivity, resolution, and accuracy,” Neuroimage 23(Suppl 1), S275–S288 (2004).
[Crossref] [PubMed]

Dan, H.

A. K. Singh, M. Okamoto, H. Dan, V. Jurcak, and I. Dan, “Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI,” Neuroimage 27(4), 842–851 (2005).
[Crossref] [PubMed]

Dan, I.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
[Crossref] [PubMed]

V. Jurcak, D. Tsuzuki, and I. Dan, “10/20, 10/10, and 10/5 systems revisited: their validity as relative head-surface-based positioning systems,” Neuroimage 34(4), 1600–1611 (2007).
[Crossref] [PubMed]

A. K. Singh, M. Okamoto, H. Dan, V. Jurcak, and I. Dan, “Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI,” Neuroimage 27(4), 842–851 (2005).
[Crossref] [PubMed]

Davis, S. C.

M. Jermyn, H. Ghadyani, M. A. Mastanduno, W. Turner, S. C. Davis, H. Dehghani, and B. W. Pogue, “Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography,” J. Biomed. Opt. 18(8), 086007 (2013).
[Crossref] [PubMed]

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

Dawant, B. M.

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
[Crossref] [PubMed]

Dehghani, H.

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
[Crossref] [PubMed]

M. Jermyn, H. Ghadyani, M. A. Mastanduno, W. Turner, S. C. Davis, H. Dehghani, and B. W. Pogue, “Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography,” J. Biomed. Opt. 18(8), 086007 (2013).
[Crossref] [PubMed]

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front. Neuroenergetics 4, 6 (2012).
[Crossref] [PubMed]

H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt. 48(10), D137–D143 (2009).
[Crossref] [PubMed]

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A. 104(29), 12169–12174 (2007).
[Crossref] [PubMed]

Delpy, D. T.

T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
[Crossref] [PubMed]

Depeursinge, C.

Detre, J. A.

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
[Crossref] [PubMed]

T. Durduran, G. Yu, M. G. Burnett, J. A. Detre, J. H. Greenberg, J. Wang, C. Zhou, and A. G. Yodh, “Diffuse optical measurement of blood flow, blood oxygenation, and metabolism in a human brain during sensorimotor cortex activation,” Opt. Lett. 29(15), 1766–1768 (2004).
[Crossref] [PubMed]

Diamond, S. G.

P. Giacometti, K. L. Perdue, and S. G. Diamond, “Algorithm to find high density EEG scalp coordinates and analysis of their correspondence to structural and functional regions of the brain,” J. Neurosci. Methods 229, 84–96 (2014).
[Crossref] [PubMed]

Dubb, J.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

Durduran, T.

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
[Crossref] [PubMed]

T. Durduran, G. Yu, M. G. Burnett, J. A. Detre, J. H. Greenberg, J. Wang, C. Zhou, and A. G. Yodh, “Diffuse optical measurement of blood flow, blood oxygenation, and metabolism in a human brain during sensorimotor cortex activation,” Opt. Lett. 29(15), 1766–1768 (2004).
[Crossref] [PubMed]

J. P. Culver, T. Durduran, D. Furuya, C. Cheung, J. H. Greenberg, and A. G. Yodh, “Diffuse optical tomography of cerebral blood flow, oxygenation, and metabolism in rat during focal ischemia,” J. Cereb. Blood Flow Metab. 23(8), 911–924 (2003).
[Crossref] [PubMed]

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

Eames, M. E.

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

Eggebrecht, A. T.

S. L. Ferradal, A. T. Eggebrecht, M. Hassanpour, A. Z. Snyder, and J. P. Culver, “Atlas-based head modeling and spatial normalization for high-density diffuse optical tomography: in vivo validation against fMRI,” Neuroimage 85(Pt 1), 117–126 (2014).
[Crossref] [PubMed]

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
[Crossref] [PubMed]

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front. Neuroenergetics 4, 6 (2012).
[Crossref] [PubMed]

Evans, A.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Fabiani, M.

E. Gratton, S. Fantini, M. A. Franceschini, G. Gratton, and M. Fabiani, “Measurements of scattering and absorption changes in muscle and brain,” Philos. Trans. R. Soc. Lond. B Biol. Sci. 352(1354), 727–735 (1997).
[Crossref] [PubMed]

Fang, Q.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

Fantini, S.

E. Gratton, S. Fantini, M. A. Franceschini, G. Gratton, and M. Fabiani, “Measurements of scattering and absorption changes in muscle and brain,” Philos. Trans. R. Soc. Lond. B Biol. Sci. 352(1354), 727–735 (1997).
[Crossref] [PubMed]

Favilla, C. G.

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
[Crossref] [PubMed]

Feidler, J.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Ferradal, S. L.

S. L. Ferradal, A. T. Eggebrecht, M. Hassanpour, A. Z. Snyder, and J. P. Culver, “Atlas-based head modeling and spatial normalization for high-density diffuse optical tomography: in vivo validation against fMRI,” Neuroimage 85(Pt 1), 117–126 (2014).
[Crossref] [PubMed]

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
[Crossref] [PubMed]

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

S. M. Liao, S. L. Ferradal, B. R. White, N. Gregg, T. E. Inder, and J. P. Culver, “High-density diffuse optical tomography of term infant visual cortex in the nursery,” J. Biomed. Opt. 17(8), 081414 (2012).
[Crossref] [PubMed]

Fischl, B.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
[Crossref] [PubMed]

Fitzpatrick, J. M.

J. B. West, J. M. Fitzpatrick, S. A. Toms, C. R. Maurer, and R. J. Maciunas, “Fiducial point placement and the accuracy of point-based, rigid body registration,” Neurosurgery 48(4), 810–816 (2001).
[PubMed]

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
[Crossref] [PubMed]

C. R. Maurer, J. M. Fitzpatrick, M. Y. Wang, R. L. Galloway, R. J. Maciunas, and G. S. Allen, “Registration of Head Volume Images Using Implantable Fiducial Markers,” IEEE Trans. Med. Imaging 16(4), 447–462 (1997).
[Crossref] [PubMed]

Fox, P.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Franceschini, M. A.

D. K. Joseph, T. J. Huppert, M. A. Franceschini, and D. A. Boas, “Diffuse optical tomography system to image brain activation with improved spatial resolution and validation with functional magnetic resonance imaging,” Appl. Opt. 45(31), 8142–8151 (2006).
[Crossref] [PubMed]

D. A. Boas, A. M. Dale, and M. A. Franceschini, “Diffuse optical imaging of brain activation: approaches to optimizing image sensitivity, resolution, and accuracy,” Neuroimage 23(Suppl 1), S275–S288 (2004).
[Crossref] [PubMed]

G. Strangman, M. A. Franceschini, and D. A. Boas, “Factors affecting the accuracy of near-infrared spectroscopy concentration calculations for focal changes in oxygenation parameters,” Neuroimage 18(4), 865–879 (2003).
[Crossref] [PubMed]

E. Gratton, S. Fantini, M. A. Franceschini, G. Gratton, and M. Fabiani, “Measurements of scattering and absorption changes in muscle and brain,” Philos. Trans. R. Soc. Lond. B Biol. Sci. 352(1354), 727–735 (1997).
[Crossref] [PubMed]

Furuya, D.

J. P. Culver, T. Durduran, D. Furuya, C. Cheung, J. H. Greenberg, and A. G. Yodh, “Diffuse optical tomography of cerebral blood flow, oxygenation, and metabolism in rat during focal ischemia,” J. Cereb. Blood Flow Metab. 23(8), 911–924 (2003).
[Crossref] [PubMed]

Galloway, R. L.

C. R. Maurer, J. M. Fitzpatrick, M. Y. Wang, R. L. Galloway, R. J. Maciunas, and G. S. Allen, “Registration of Head Volume Images Using Implantable Fiducial Markers,” IEEE Trans. Med. Imaging 16(4), 447–462 (1997).
[Crossref] [PubMed]

Gaudette, T.

D. A. Boas, T. Gaudette, G. Strangman, X. Cheng, J. J. Marota, and J. B. Mandeville, “The accuracy of near infrared spectroscopy and imaging during focal changes in cerebral hemodynamics,” Neuroimage 13(1), 76–90 (2001).
[Crossref] [PubMed]

Gee, J.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Geyer, S.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Ghadyani, H.

M. Jermyn, H. Ghadyani, M. A. Mastanduno, W. Turner, S. C. Davis, H. Dehghani, and B. W. Pogue, “Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography,” J. Biomed. Opt. 18(8), 086007 (2013).
[Crossref] [PubMed]

Giacometti, P.

P. Giacometti, K. L. Perdue, and S. G. Diamond, “Algorithm to find high density EEG scalp coordinates and analysis of their correspondence to structural and functional regions of the brain,” J. Neurosci. Methods 229, 84–96 (2014).
[Crossref] [PubMed]

Gibson, A. P.

T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
[Crossref] [PubMed]

Graber, H. L.

Gratton, E.

E. Gratton, S. Fantini, M. A. Franceschini, G. Gratton, and M. Fabiani, “Measurements of scattering and absorption changes in muscle and brain,” Philos. Trans. R. Soc. Lond. B Biol. Sci. 352(1354), 727–735 (1997).
[Crossref] [PubMed]

Gratton, G.

E. Gratton, S. Fantini, M. A. Franceschini, G. Gratton, and M. Fabiani, “Measurements of scattering and absorption changes in muscle and brain,” Philos. Trans. R. Soc. Lond. B Biol. Sci. 352(1354), 727–735 (1997).
[Crossref] [PubMed]

Greenberg, J. H.

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
[Crossref] [PubMed]

T. Durduran, G. Yu, M. G. Burnett, J. A. Detre, J. H. Greenberg, J. Wang, C. Zhou, and A. G. Yodh, “Diffuse optical measurement of blood flow, blood oxygenation, and metabolism in a human brain during sensorimotor cortex activation,” Opt. Lett. 29(15), 1766–1768 (2004).
[Crossref] [PubMed]

J. P. Culver, T. Durduran, D. Furuya, C. Cheung, J. H. Greenberg, and A. G. Yodh, “Diffuse optical tomography of cerebral blood flow, oxygenation, and metabolism in rat during focal ischemia,” J. Cereb. Blood Flow Metab. 23(8), 911–924 (2003).
[Crossref] [PubMed]

Gregg, N.

S. M. Liao, S. L. Ferradal, B. R. White, N. Gregg, T. E. Inder, and J. P. Culver, “High-density diffuse optical tomography of term infant visual cortex in the nursery,” J. Biomed. Opt. 17(8), 081414 (2012).
[Crossref] [PubMed]

Grimm, C.

H. J. Huppertz, M. Otte, C. Grimm, R. Kristeva-Feige, T. Mergner, and C. H. Lücking, “Estimation of the accuracy of a surface matching technique for registration of EEG and MRI data,” Electroencephalogr. Clin. Neurophysiol. 106(5), 409–415 (1998).
[Crossref] [PubMed]

Grimson, W. E.

A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
[Crossref] [PubMed]

Gross, J. D.

Guckemus, S.

B. A. Ardekani, S. Guckemus, A. Bachman, M. J. Hoptman, M. Wojtaszek, and J. Nierenberg, “Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans,” J. Neurosci. Methods 142(1), 67–76 (2005).
[Crossref] [PubMed]

Habermehl, C.

C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
[Crossref] [PubMed]

S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Hartkens, T.

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S. L. Ferradal, A. T. Eggebrecht, M. Hassanpour, A. Z. Snyder, and J. P. Culver, “Atlas-based head modeling and spatial normalization for high-density diffuse optical tomography: in vivo validation against fMRI,” Neuroimage 85(Pt 1), 117–126 (2014).
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Hassanpour, M. S.

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
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T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
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A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
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Hershey, T.

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
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U. Herwig, P. Satrapi, and C. Schönfeldt-Lecuona, “Using the International 10-20 EEG system for positioning of transcranial magnetic stimulation,” Brain Topogr. 16(2), 95–99 (2003).
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Hielscher, A.

Hill, D. L. G.

W. R. Crum, T. Hartkens, and D. L. G. Hill, “Non-rigid image registration: theory and practice,” Br. J. Radiol. 77(2), S140–S153 (2004).
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Hintz, S. R.

S. R. Hintz, D. A. Benaron, A. M. Siegel, A. Zourabian, D. K. Stevenson, and D. A. Boas, “Bedside functional imaging of the premature infant brain during passive motor activation,” J. Perinat. Med. 29(4), 335–343 (2001).
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J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
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Holmes, C.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
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J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
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Holtze, S.

C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
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S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Hoptman, M. J.

B. A. Ardekani, S. Guckemus, A. Bachman, M. J. Hoptman, M. Wojtaszek, and J. Nierenberg, “Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans,” J. Neurosci. Methods 142(1), 67–76 (2005).
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Hulshoff Pol, H.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
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Huppert, T. J.

Huppertz, H. J.

H. J. Huppertz, M. Otte, C. Grimm, R. Kristeva-Feige, T. Mergner, and C. H. Lücking, “Estimation of the accuracy of a surface matching technique for registration of EEG and MRI data,” Electroencephalogr. Clin. Neurophysiol. 106(5), 409–415 (1998).
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Iacoboni, M.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
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J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
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Inder, T. E.

S. M. Liao, S. L. Ferradal, B. R. White, N. Gregg, T. E. Inder, and J. P. Culver, “High-density diffuse optical tomography of term infant visual cortex in the nursery,” J. Biomed. Opt. 17(8), 081414 (2012).
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Jenkinson, M.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
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Jermyn, M.

M. Jermyn, H. Ghadyani, M. A. Mastanduno, W. Turner, S. C. Davis, H. Dehghani, and B. W. Pogue, “Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography,” J. Biomed. Opt. 18(8), 086007 (2013).
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Jiang, S.

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
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Joseph, D. K.

Jurcak, V.

V. Jurcak, D. Tsuzuki, and I. Dan, “10/20, 10/10, and 10/5 systems revisited: their validity as relative head-surface-based positioning systems,” Neuroimage 34(4), 1600–1611 (2007).
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A. K. Singh, M. Okamoto, H. Dan, V. Jurcak, and I. Dan, “Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI,” Neuroimage 27(4), 842–851 (2005).
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Kabani, N.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
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Kasner, S. E.

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
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Kawashima, R.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Kessler, R. M.

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
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Khan, B.

F. H. Tian, H. J. Niu, B. Khan, G. Alexandrakis, K. Behbehani, and H. L. Liu, “Enhanced Functional Brain Imaging by Using Adaptive Filtering and a Depth Compensation Algorithm in Diffuse Optical Tomography,” IEEE Trans. Med. Imaging 30(6), 1239–1251 (2011).
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Kim, M. N.

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
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Klein, A.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Koch, S. P.

C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
[Crossref] [PubMed]

S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Kristeva-Feige, R.

H. J. Huppertz, M. Otte, C. Grimm, R. Kristeva-Feige, T. Mergner, and C. H. Lücking, “Estimation of the accuracy of a surface matching technique for registration of EEG and MRI data,” Electroencephalogr. Clin. Neurophysiol. 106(5), 409–415 (1998).
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D. Chetverikov, D. Svirko, D. Stepanov, and P. Krsek, “The trimmed iterative closest point algorithm,” Int. C Patt. Recog. 3, 545–548 (2002).
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Lancaster, J.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Le Goualher, G.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Lepage, C.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Liao, S. M.

S. M. Liao, S. L. Ferradal, B. R. White, N. Gregg, T. E. Inder, and J. P. Culver, “High-density diffuse optical tomography of term infant visual cortex in the nursery,” J. Biomed. Opt. 17(8), 081414 (2012).
[Crossref] [PubMed]

Liu, H. L.

F. H. Tian, H. J. Niu, B. Khan, G. Alexandrakis, K. Behbehani, and H. L. Liu, “Enhanced Functional Brain Imaging by Using Adaptive Filtering and a Depth Compensation Algorithm in Diffuse Optical Tomography,” IEEE Trans. Med. Imaging 30(6), 1239–1251 (2011).
[Crossref] [PubMed]

Lu, X.

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
[Crossref] [PubMed]

Lücking, C. H.

H. J. Huppertz, M. Otte, C. Grimm, R. Kristeva-Feige, T. Mergner, and C. H. Lücking, “Estimation of the accuracy of a surface matching technique for registration of EEG and MRI data,” Electroencephalogr. Clin. Neurophysiol. 106(5), 409–415 (1998).
[Crossref] [PubMed]

MacDonald, D.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Maciunas, R. J.

J. B. West, J. M. Fitzpatrick, S. A. Toms, C. R. Maurer, and R. J. Maciunas, “Fiducial point placement and the accuracy of point-based, rigid body registration,” Neurosurgery 48(4), 810–816 (2001).
[PubMed]

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
[Crossref] [PubMed]

C. R. Maurer, J. M. Fitzpatrick, M. Y. Wang, R. L. Galloway, R. J. Maciunas, and G. S. Allen, “Registration of Head Volume Images Using Implantable Fiducial Markers,” IEEE Trans. Med. Imaging 16(4), 447–462 (1997).
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Mandeville, J. B.

D. A. Boas, T. Gaudette, G. Strangman, X. Cheng, J. J. Marota, and J. B. Mandeville, “The accuracy of near infrared spectroscopy and imaging during focal changes in cerebral hemodynamics,” Neuroimage 13(1), 76–90 (2001).
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Mann, J. J.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
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Marota, J. J.

D. A. Boas, T. Gaudette, G. Strangman, X. Cheng, J. J. Marota, and J. B. Mandeville, “The accuracy of near infrared spectroscopy and imaging during focal changes in cerebral hemodynamics,” Neuroimage 13(1), 76–90 (2001).
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Marquet, P.

Mastanduno, M. A.

M. Jermyn, H. Ghadyani, M. A. Mastanduno, W. Turner, S. C. Davis, H. Dehghani, and B. W. Pogue, “Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography,” J. Biomed. Opt. 18(8), 086007 (2013).
[Crossref] [PubMed]

Maurer, C. R.

J. B. West, J. M. Fitzpatrick, S. A. Toms, C. R. Maurer, and R. J. Maciunas, “Fiducial point placement and the accuracy of point-based, rigid body registration,” Neurosurgery 48(4), 810–816 (2001).
[PubMed]

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
[Crossref] [PubMed]

C. R. Maurer, J. M. Fitzpatrick, M. Y. Wang, R. L. Galloway, R. J. Maciunas, and G. S. Allen, “Registration of Head Volume Images Using Implantable Fiducial Markers,” IEEE Trans. Med. Imaging 16(4), 447–462 (1997).
[Crossref] [PubMed]

Mazoyer, B.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Mazziotta, J.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

McBride, T. O.

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
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T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
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C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
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S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Mergner, T.

H. J. Huppertz, M. Otte, C. Grimm, R. Kristeva-Feige, T. Mergner, and C. H. Lücking, “Estimation of the accuracy of a surface matching technique for registration of EEG and MRI data,” Electroencephalogr. Clin. Neurophysiol. 106(5), 409–415 (1998).
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A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
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C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
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C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
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Narr, K.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
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J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
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Ntziachristos, V.

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

Obrig, H.

C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
[Crossref] [PubMed]

S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Okamoto, M.

A. K. Singh, M. Okamoto, H. Dan, V. Jurcak, and I. Dan, “Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI,” Neuroimage 27(4), 842–851 (2005).
[Crossref] [PubMed]

Osterberg, U. L.

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
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Otte, M.

H. J. Huppertz, M. Otte, C. Grimm, R. Kristeva-Feige, T. Mergner, and C. H. Lücking, “Estimation of the accuracy of a surface matching technique for registration of EEG and MRI data,” Electroencephalogr. Clin. Neurophysiol. 106(5), 409–415 (1998).
[Crossref] [PubMed]

Palomero-Gallagher, N.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
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J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
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Parsey, R. V.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
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Parsons, L.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
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J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
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Paulsen, K. D.

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
[Crossref] [PubMed]

Paus, T.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Pei, Y.

Perdue, K. L.

P. Giacometti, K. L. Perdue, and S. G. Diamond, “Algorithm to find high density EEG scalp coordinates and analysis of their correspondence to structural and functional regions of the brain,” J. Neurosci. Methods 229, 84–96 (2014).
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Petersen, S. E.

B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage 47(1), 148–156 (2009).
[Crossref] [PubMed]

Piguet, D.

Pike, B.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Pogue, B. W.

M. Jermyn, H. Ghadyani, M. A. Mastanduno, W. Turner, S. C. Davis, H. Dehghani, and B. W. Pogue, “Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography,” J. Biomed. Opt. 18(8), 086007 (2013).
[Crossref] [PubMed]

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
[Crossref] [PubMed]

Poplack, S.

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
[Crossref] [PubMed]

Raichle, M. E.

B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage 47(1), 148–156 (2009).
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Robichaux-Viehoever, A.

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
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Rueckert, D.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
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Satrapi, P.

U. Herwig, P. Satrapi, and C. Schönfeldt-Lecuona, “Using the International 10-20 EEG system for positioning of transcranial magnetic stimulation,” Brain Topogr. 16(2), 95–99 (2003).
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Schlaggar, B. L.

B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage 47(1), 148–156 (2009).
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B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A. 104(29), 12169–12174 (2007).
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Schmitz, C.

Schmitz, C. H.

C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
[Crossref] [PubMed]

S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Schönfeldt-Lecuona, C.

U. Herwig, P. Satrapi, and C. Schönfeldt-Lecuona, “Using the International 10-20 EEG system for positioning of transcranial magnetic stimulation,” Brain Topogr. 16(2), 95–99 (2003).
[Crossref] [PubMed]

Schormann, T.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
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Siegel, A. M.

S. R. Hintz, D. A. Benaron, A. M. Siegel, A. Zourabian, D. K. Stevenson, and D. A. Boas, “Bedside functional imaging of the premature infant brain during passive motor activation,” J. Perinat. Med. 29(4), 335–343 (2001).
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Simpson, G.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
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Singh, A. K.

A. K. Singh, M. Okamoto, H. Dan, V. Jurcak, and I. Dan, “Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI,” Neuroimage 27(4), 842–851 (2005).
[Crossref] [PubMed]

Slemp, A.

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

Smith, K.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Snyder, A. Z.

A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
[Crossref] [PubMed]

S. L. Ferradal, A. T. Eggebrecht, M. Hassanpour, A. Z. Snyder, and J. P. Culver, “Atlas-based head modeling and spatial normalization for high-density diffuse optical tomography: in vivo validation against fMRI,” Neuroimage 85(Pt 1), 117–126 (2014).
[Crossref] [PubMed]

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage 47(1), 148–156 (2009).
[Crossref] [PubMed]

Soho, S.

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
[Crossref] [PubMed]

Song, J. H.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Srinivasan, S.

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

Steinbrink, J.

C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
[Crossref] [PubMed]

S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Stepanov, D.

D. Chetverikov, D. Svirko, D. Stepanov, and P. Krsek, “The trimmed iterative closest point algorithm,” Int. C Patt. Recog. 3, 545–548 (2002).
[Crossref]

Stevenson, D. K.

S. R. Hintz, D. A. Benaron, A. M. Siegel, A. Zourabian, D. K. Stevenson, and D. A. Boas, “Bedside functional imaging of the premature infant brain during passive motor activation,” J. Perinat. Med. 29(4), 335–343 (2001).
[Crossref] [PubMed]

Strangman, G.

G. Strangman, M. A. Franceschini, and D. A. Boas, “Factors affecting the accuracy of near-infrared spectroscopy concentration calculations for focal changes in oxygenation parameters,” Neuroimage 18(4), 865–879 (2003).
[Crossref] [PubMed]

D. A. Boas, T. Gaudette, G. Strangman, X. Cheng, J. J. Marota, and J. B. Mandeville, “The accuracy of near infrared spectroscopy and imaging during focal changes in cerebral hemodynamics,” Neuroimage 13(1), 76–90 (2001).
[Crossref] [PubMed]

Svirko, D.

D. Chetverikov, D. Svirko, D. Stepanov, and P. Krsek, “The trimmed iterative closest point algorithm,” Int. C Patt. Recog. 3, 545–548 (2002).
[Crossref]

Thompson, P.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Tian, F. H.

F. H. Tian, H. J. Niu, B. Khan, G. Alexandrakis, K. Behbehani, and H. L. Liu, “Enhanced Functional Brain Imaging by Using Adaptive Filtering and a Depth Compensation Algorithm in Diffuse Optical Tomography,” IEEE Trans. Med. Imaging 30(6), 1239–1251 (2011).
[Crossref] [PubMed]

Tizzard, A.

Toga, A.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Toms, S. A.

J. B. West, J. M. Fitzpatrick, S. A. Toms, C. R. Maurer, and R. J. Maciunas, “Fiducial point placement and the accuracy of point-based, rigid body registration,” Neurosurgery 48(4), 810–816 (2001).
[PubMed]

Tromberg, B. J.

Tsuzuki, D.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
[Crossref] [PubMed]

V. Jurcak, D. Tsuzuki, and I. Dan, “10/20, 10/10, and 10/5 systems revisited: their validity as relative head-surface-based positioning systems,” Neuroimage 34(4), 1600–1611 (2007).
[Crossref] [PubMed]

Turner, W.

M. Jermyn, H. Ghadyani, M. A. Mastanduno, W. Turner, S. C. Davis, H. Dehghani, and B. W. Pogue, “Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography,” J. Biomed. Opt. 18(8), 086007 (2013).
[Crossref] [PubMed]

Vercauteren, T.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Villringer, A.

S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Wang, J.

Wang, M. Y.

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
[Crossref] [PubMed]

C. R. Maurer, J. M. Fitzpatrick, M. Y. Wang, R. L. Galloway, R. J. Maciunas, and G. S. Allen, “Registration of Head Volume Images Using Implantable Fiducial Markers,” IEEE Trans. Med. Imaging 16(4), 447–462 (1997).
[Crossref] [PubMed]

Wells, W.

R. J. Cooper, M. Caffini, J. Dubb, Q. Fang, A. Custo, D. Tsuzuki, B. Fischl, W. Wells, I. Dan, and D. A. Boas, “Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies,” Neuroimage 62(3), 1999–2006 (2012).
[Crossref] [PubMed]

A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage 49(1), 561–567 (2010).
[Crossref] [PubMed]

Wells, W. A.

T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
[Crossref] [PubMed]

West, J.

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
[Crossref] [PubMed]

West, J. B.

J. B. West, J. M. Fitzpatrick, S. A. Toms, C. R. Maurer, and R. J. Maciunas, “Fiducial point placement and the accuracy of point-based, rigid body registration,” Neurosurgery 48(4), 810–816 (2001).
[PubMed]

White, B. R.

S. M. Liao, S. L. Ferradal, B. R. White, N. Gregg, T. E. Inder, and J. P. Culver, “High-density diffuse optical tomography of term infant visual cortex in the nursery,” J. Biomed. Opt. 17(8), 081414 (2012).
[Crossref] [PubMed]

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

B. R. White and J. P. Culver, “Quantitative evaluation of high-density diffuse optical tomography: in vivo resolution and mapping performance,” J. Biomed. Opt. 15(2), 026006 (2010).
[Crossref] [PubMed]

B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage 47(1), 148–156 (2009).
[Crossref] [PubMed]

H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt. 48(10), D137–D143 (2009).
[Crossref] [PubMed]

B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A. 104(29), 12169–12174 (2007).
[Crossref] [PubMed]

Wojtaszek, M.

B. A. Ardekani, S. Guckemus, A. Bachman, M. J. Hoptman, M. Wojtaszek, and J. Nierenberg, “Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans,” J. Neurosci. Methods 142(1), 67–76 (2005).
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Woods, R.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

Woods, R. P.

A. Klein, J. Andersson, B. A. Ardekani, J. Ashburner, B. Avants, M. C. Chiang, G. E. Christensen, D. L. Collins, J. Gee, P. Hellier, J. H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. P. Woods, J. J. Mann, and R. V. Parsey, “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration,” Neuroimage 46(3), 786–802 (2009).
[Crossref] [PubMed]

Wyatt, J. S.

T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
[Crossref] [PubMed]

Yalavarthy, P. K.

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

Yodh, A. G.

C. G. Favilla, R. C. Mesquita, M. Mullen, T. Durduran, X. Lu, M. N. Kim, D. L. Minkoff, S. E. Kasner, J. H. Greenberg, A. G. Yodh, and J. A. Detre, “Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation,” Stroke 45(5), 1269–1274 (2014).
[Crossref] [PubMed]

T. Durduran, G. Yu, M. G. Burnett, J. A. Detre, J. H. Greenberg, J. Wang, C. Zhou, and A. G. Yodh, “Diffuse optical measurement of blood flow, blood oxygenation, and metabolism in a human brain during sensorimotor cortex activation,” Opt. Lett. 29(15), 1766–1768 (2004).
[Crossref] [PubMed]

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

J. P. Culver, T. Durduran, D. Furuya, C. Cheung, J. H. Greenberg, and A. G. Yodh, “Diffuse optical tomography of cerebral blood flow, oxygenation, and metabolism in rat during focal ischemia,” J. Cereb. Blood Flow Metab. 23(8), 911–924 (2003).
[Crossref] [PubMed]

Yu, G.

Yusof, R. M.

T. Austin, A. P. Gibson, G. Branco, R. M. Yusof, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain,” Neuroimage 31(4), 1426–1433 (2006).
[Crossref] [PubMed]

Zeff, B. W.

H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt. 48(10), D137–D143 (2009).
[Crossref] [PubMed]

B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A. 104(29), 12169–12174 (2007).
[Crossref] [PubMed]

Zhan, Y.

A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage 61(4), 1120–1128 (2012).
[Crossref] [PubMed]

Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front. Neuroenergetics 4, 6 (2012).
[Crossref] [PubMed]

Zhou, C.

Zilles, K.

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, R. Kawashima, and B. Mazoyer, “A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM),” Philos. Trans. R. Soc. Lond. B Biol. Sci. 356(1412), 1293–1322 (2001).
[Crossref] [PubMed]

Zourabian, A.

S. R. Hintz, D. A. Benaron, A. M. Siegel, A. Zourabian, D. K. Stevenson, and D. A. Boas, “Bedside functional imaging of the premature infant brain during passive motor activation,” J. Perinat. Med. 29(4), 335–343 (2001).
[Crossref] [PubMed]

Zubkov, L.

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
[Crossref] [PubMed]

Appl. Opt. (5)

Br. J. Radiol. (1)

W. R. Crum, T. Hartkens, and D. L. G. Hill, “Non-rigid image registration: theory and practice,” Br. J. Radiol. 77(2), S140–S153 (2004).
[Crossref] [PubMed]

Brain Topogr. (1)

U. Herwig, P. Satrapi, and C. Schönfeldt-Lecuona, “Using the International 10-20 EEG system for positioning of transcranial magnetic stimulation,” Brain Topogr. 16(2), 95–99 (2003).
[Crossref] [PubMed]

Commun. Numer. Methods Eng. (1)

H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng. 25(6), 711–732 (2009).
[Crossref] [PubMed]

Electroencephalogr. Clin. Neurophysiol. (1)

H. J. Huppertz, M. Otte, C. Grimm, R. Kristeva-Feige, T. Mergner, and C. H. Lücking, “Estimation of the accuracy of a surface matching technique for registration of EEG and MRI data,” Electroencephalogr. Clin. Neurophysiol. 106(5), 409–415 (1998).
[Crossref] [PubMed]

Front Neuroenergetics (1)

S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics 2, 12 (2010).
[PubMed]

Front. Neuroenergetics (1)

Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front. Neuroenergetics 4, 6 (2012).
[Crossref] [PubMed]

IEEE Trans. Med. Imaging (3)

F. H. Tian, H. J. Niu, B. Khan, G. Alexandrakis, K. Behbehani, and H. L. Liu, “Enhanced Functional Brain Imaging by Using Adaptive Filtering and a Depth Compensation Algorithm in Diffuse Optical Tomography,” IEEE Trans. Med. Imaging 30(6), 1239–1251 (2011).
[Crossref] [PubMed]

J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, R. M. Kessler, and R. J. Maciunas, “Retrospective intermodality registration techniques for images of the head: surface-based versus volume-based,” IEEE Trans. Med. Imaging 18(2), 144–150 (1999).
[Crossref] [PubMed]

C. R. Maurer, J. M. Fitzpatrick, M. Y. Wang, R. L. Galloway, R. J. Maciunas, and G. S. Allen, “Registration of Head Volume Images Using Implantable Fiducial Markers,” IEEE Trans. Med. Imaging 16(4), 447–462 (1997).
[Crossref] [PubMed]

Int. C Patt. Recog. (1)

D. Chetverikov, D. Svirko, D. Stepanov, and P. Krsek, “The trimmed iterative closest point algorithm,” Int. C Patt. Recog. 3, 545–548 (2002).
[Crossref]

J. Am. Med. Inform. Assoc. (1)

J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, L. Collins, P. Thompson, D. MacDonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, R. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J. Am. Med. Inform. Assoc. 8(5), 401–430 (2001).
[Crossref] [PubMed]

J. Biomed. Opt. (4)

S. M. Liao, S. L. Ferradal, B. R. White, N. Gregg, T. E. Inder, and J. P. Culver, “High-density diffuse optical tomography of term infant visual cortex in the nursery,” J. Biomed. Opt. 17(8), 081414 (2012).
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B. R. White and J. P. Culver, “Quantitative evaluation of high-density diffuse optical tomography: in vivo resolution and mapping performance,” J. Biomed. Opt. 15(2), 026006 (2010).
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T. O. McBride, B. W. Pogue, S. Poplack, S. Soho, W. A. Wells, S. Jiang, U. L. Osterberg, and K. D. Paulsen, “Multispectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast,” J. Biomed. Opt. 7(1), 72–79 (2002).
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J. Cereb. Blood Flow Metab. (1)

J. P. Culver, T. Durduran, D. Furuya, C. Cheung, J. H. Greenberg, and A. G. Yodh, “Diffuse optical tomography of cerebral blood flow, oxygenation, and metabolism in rat during focal ischemia,” J. Cereb. Blood Flow Metab. 23(8), 911–924 (2003).
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B. A. Ardekani, S. Guckemus, A. Bachman, M. J. Hoptman, M. Wojtaszek, and J. Nierenberg, “Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans,” J. Neurosci. Methods 142(1), 67–76 (2005).
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Med. Phys. (1)

J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, B. Chance, and A. G. Yodh, “Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging,” Med. Phys. 30(2), 235–247 (2003).
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A. T. Eggebrecht, S. L. Ferradal, A. Robichaux-Viehoever, M. S. Hassanpour, H. Dehghani, A. Z. Snyder, T. Hershey, and J. P. Culver, “Mapping distributed brain function and networks with diffuse optical tomography,” Nat. Photonics 8(6), 448–454 (2014).
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Neuroimage (13)

C. Habermehl, S. Holtze, J. Steinbrink, S. P. Koch, H. Obrig, J. Mehnert, and C. H. Schmitz, “Somatosensory activation of two fingers can be discriminated with ultrahigh-density diffuse optical tomography,” Neuroimage 59(4), 3201–3211 (2012).
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Figures (13)

Fig. 1
Fig. 1 Workflow of creating subject specific models from subject MRI.
Fig. 2
Fig. 2 Workflow of creating atlas based models using registration methods.
Fig. 3
Fig. 3 Set of 5 different Landmark systems used for registration.
Fig. 4
Fig. 4 Examples of calculated surface distance errors for three different registration methods. ROI is shown in black box is used for all quantitative analysis
Fig. 5
Fig. 5 Surface geometry error for different registration methods for all 24 subjects. The central (red) lines represent the median, the box plots represent the 25th and 75th percentiles, whereas the whiskers present +/− 2.7 standard deviations. Outliers are presented as red crosses.
Fig. 6
Fig. 6 Examples of calculated cortex surface errors for three different registration methods. Top row: Back view. Middle row: Side view. Bottom row: Top view.
Fig. 7
Fig. 7 Joint histograms of a single subject with different registration algorithms.
Fig. 8
Fig. 8 Spatial map of error in tissue absorption at 750nm for a given subject for different registration methods. This is an axial slice through the registered atlas mesh, mid-way within the measurement pad.
Fig. 9
Fig. 9 Example of relative error of sensitivity matrices on the cortex. Note that only the regions with a total sensitivity greater that 1% of the maximum value are shown.
Fig. 10
Fig. 10 Mean relative sensitivity error for different registration methods for all 24 subjects. The central (red) lines represent the median, the box plots represent the 25th and 75th percentiles, whereas the whiskers present +/− 2.7 standard deviations. Outliers are presented as red crosses.
Fig. 11
Fig. 11 Mean relative sensitivity error 24 subjects versus mean surface error. Note that the 4 basic landmark data is not considered for the R2 value or the best fit line.
Fig. 12
Fig. 12 Example of focal activation recovery result for a single subject based on subject specific model and three registered atlas models. Note that each individual activation is color-coded and represent an individual simulation. White lines in the zoomed in plots represent the simulated activation.
Fig. 13
Fig. 13 Evaluation of focal activation recovery for all registration methods across all 24 subjects.

Tables (2)

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Table 1 Head tissue optical properties at 750 nm

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Table 2 Rigid registration methods as well as different types of landmark systems used.

Equations (11)

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T=ar g T min i=1 n | | TAtla s i Su b i | |
Atla s i k = T k Atla s i k1
Δµ= J ˜ T ( J ˜ J ˜ T +I ) 1 Δy
J ˜ =  J  J J T +β( max( diag( J J T ) ) )
D c = ( x r x s ) 2 + ( y r y s ) 2 + ( z r z s ) 2
x r = i=1 nodes ( x ni * μ ani ) i=1 nodes ( μ ani )
y r = i=1 nodes ( y ni * μ ani ) i=1 nodes ( μ ani )
z r = i=1 nodes ( z ni * μ ani ) i=1 nodes ( μ ani )
v per = v r v s *100%
v ov = v overlay v s *100%
μ r = i=1 nodes ( μ ani ) nodes μ sim

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