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J. Lim, A. B. Ayoub, E. E. Antoine, and D. Psaltis, “High-fidelity optical diffraction tomography of multiple scattering samples,” Light: Sci. Appl. 8(1), 1–12 (2019).

[Crossref]

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 8(3), 256–263 (2014).

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[Crossref]

J. Li, Q. Chen, J. Zhang, Y. Zhang, L. Lu, and C. Zuo, “Efficient quantitative phase microscopy using programmable annular led illumination,” Biomed. Opt. Express 8(10), 4687–4705 (2017).

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[Crossref]

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

[Crossref]

Y. Park, C. Depeursinge, and G. Popescu, “Quantitative phase imaging in biomedicine,” Nat. Photonics 12(10), 578–589 (2018).

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[Crossref]

Y. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. Choi, M. S. Feld, and S. Suresh, “Refractive index maps and membrane dynamics of human red blood cells parasitized by plasmodium falciparum,” Proc. Natl. Acad. Sci. 105(37), 13730–13735 (2008).

[Crossref]

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

Y. Fan, J. Sun, Q. Chen, X. Pan, L. Tian, and C. Zuo, “Optimal illumination scheme for isotropic quantitative differential phase contrast microscopy,” Photonics Res. 7(8), 890 (2019).

[Crossref]

Y. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. Choi, M. S. Feld, and S. Suresh, “Refractive index maps and membrane dynamics of human red blood cells parasitized by plasmodium falciparum,” Proc. Natl. Acad. Sci. 105(37), 13730–13735 (2008).

[Crossref]

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

T. Kim, R. Zhou, L. L. Goddard, and G. Popescu, “Solving inverse scattering problems in biological samples by quantitative phase imaging,” Laser Photonics Rev. 10(1), 13–39 (2016).

[Crossref]

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 8(3), 256–263 (2014).

[Crossref]

A. Goy, G. Rughoobur, S. Li, K. Arthur, A. I. Akinwande, and G. Barbastathis, “High-resolution limited-angle phase tomography of dense layered objects using deep neural networks,” Proc. Natl. Acad. Sci. 116(40), 19848–19856 (2019).

[Crossref]

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[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach to optical tomography,” Optica 2(6), 517–522 (2015).

[Crossref]

Y. Rivenson, Y. Zhang, H. Günaydın, D. Teng, and A. Ozcan, “Phase recovery and holographic image reconstruction using deep learning in neural networks,” Light: Sci. Appl. 7(2), 17141 (2018).

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[Crossref]

V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

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V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

[Crossref]

H. Majeed, S. Sridharan, M. Mir, L. Ma, E. Min, W. Jung, and G. Popescu, “Quantitative phase imaging for medical diagnosis,” J. Biophotonics 10(2), 177–205 (2017).

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[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Optical tomographic image reconstruction based on beam propagation and sparse regularization,” IEEE Trans. Comput. Imaging 2(1), 59–70 (2016).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach to optical tomography,” Optica 2(6), 517–522 (2015).

[Crossref]

T. H. Nguyen, M. E. Kandel, M. Rubessa, M. B. Wheeler, and G. Popescu, “Gradient light interference microscopy for 3D imaging of unlabeled specimens,” Nat. Commun. 8(1), 210 (2017).

[Crossref]

V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

[Crossref]

M. Kellman, E. Bostan, N. Repina, and L. Waller, “Physics-based learned design: Optimized coded-illumination for quantitative phase imaging,” IEEE Trans. Comput. Imaging 5(3), 344–353 (2019).

[Crossref]

M. Kellman, E. Bostan, M. Chen, and L. Waller, “Data-driven design for fourier ptychographic microscopy,” in 2019 IEEE International Conference on Computational Photography (ICCP), (IEEE, 2019), pp. 1–8.

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

T. Kim, R. Zhou, L. L. Goddard, and G. Popescu, “Solving inverse scattering problems in biological samples by quantitative phase imaging,” Laser Photonics Rev. 10(1), 13–39 (2016).

[Crossref]

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 8(3), 256–263 (2014).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

S. Li, M. Deng, J. Lee, A. Sinha, and G. Barbastathis, “Imaging through glass diffusers using densely connected convolutional networks,” Optica 5(7), 803–813 (2018).

[Crossref]

A. Sinha, J. Lee, S. Li, and G. Barbastathis, “Lensless computational imaging through deep learning,” Optica 4(9), 1117–1125 (2017).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

J. Li, Q. Chen, J. Sun, J. Zhang, J. Ding, and C. Zuo, “Three-dimensional tomographic microscopy technique with multi-frequency combination with partially coherent illuminations,” Biomed. Opt. Express 9(6), 2526–2542 (2018).

[Crossref]

J. Li, Q. Chen, J. Zhang, Y. Zhang, L. Lu, and C. Zuo, “Efficient quantitative phase microscopy using programmable annular led illumination,” Biomed. Opt. Express 8(10), 4687–4705 (2017).

[Crossref]

J. Li, A. Matlock, Y. Li, Q. Chen, C. Zuo, and L. Tian, “High-speed in vitro intensity diffraction tomography,” arXiv preprint arXiv:1904.06004 (2019).

A. Goy, G. Rughoobur, S. Li, K. Arthur, A. I. Akinwande, and G. Barbastathis, “High-resolution limited-angle phase tomography of dense layered objects using deep neural networks,” Proc. Natl. Acad. Sci. 116(40), 19848–19856 (2019).

[Crossref]

S. Li, M. Deng, J. Lee, A. Sinha, and G. Barbastathis, “Imaging through glass diffusers using densely connected convolutional networks,” Optica 5(7), 803–813 (2018).

[Crossref]

A. Sinha, J. Lee, S. Li, and G. Barbastathis, “Lensless computational imaging through deep learning,” Optica 4(9), 1117–1125 (2017).

[Crossref]

Y. Xue, S. Cheng, Y. Li, and L. Tian, “Reliable deep-learning-based phase imaging with uncertainty quantification,” Optica 6(5), 618–629 (2019).

[Crossref]

T. Nguyen, Y. Xue, Y. Li, L. Tian, and G. Nehmetallah, “Deep learning approach for fourier ptychography microscopy,” Opt. Express 26(20), 26470–26484 (2018).

[Crossref]

Y. Li, Y. Xue, and L. Tian, “Deep speckle correlation: a deep learning approach toward scalable imaging through scattering media,” Optica 5(10), 1181–1190 (2018).

[Crossref]

J. Li, A. Matlock, Y. Li, Q. Chen, C. Zuo, and L. Tian, “High-speed in vitro intensity diffraction tomography,” arXiv preprint arXiv:1904.06004 (2019).

J. Lim, A. B. Ayoub, E. E. Antoine, and D. Psaltis, “High-fidelity optical diffraction tomography of multiple scattering samples,” Light: Sci. Appl. 8(1), 1–12 (2019).

[Crossref]

H.-H. Chen, Y.-Z. Lin, and Y. Luo, “Isotropic differential phase contrast microscopy for quantitative phase bio-imaging,” J. Biophotonics 11(8), e201700364 (2018).

[Crossref]

V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

[Crossref]

Z. Liu, L. Tian, S. Liu, and L. Waller, “Real-time brightfield, darkfield, and phase contrast imaging in a light-emitting diode array microscope,” J. Biomed. Opt. 19(10), 106002 (2014).

[Crossref]

L. Tian, Z. Liu, L.-H. Yeh, M. Chen, J. Zhong, and L. Waller, “Computational illumination for high-speed in vitro Fourier ptychographic microscopy,” Optica 2(10), 904–911 (2015).

[Crossref]

Z. Liu, L. Tian, S. Liu, and L. Waller, “Real-time brightfield, darkfield, and phase contrast imaging in a light-emitting diode array microscope,” J. Biomed. Opt. 19(10), 106002 (2014).

[Crossref]

H.-H. Chen, Y.-Z. Lin, and Y. Luo, “Isotropic differential phase contrast microscopy for quantitative phase bio-imaging,” J. Biophotonics 11(8), e201700364 (2018).

[Crossref]

Y. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. Choi, M. S. Feld, and S. Suresh, “Refractive index maps and membrane dynamics of human red blood cells parasitized by plasmodium falciparum,” Proc. Natl. Acad. Sci. 105(37), 13730–13735 (2008).

[Crossref]

H. Majeed, S. Sridharan, M. Mir, L. Ma, E. Min, W. Jung, and G. Popescu, “Quantitative phase imaging for medical diagnosis,” J. Biophotonics 10(2), 177–205 (2017).

[Crossref]

H. Majeed, S. Sridharan, M. Mir, L. Ma, E. Min, W. Jung, and G. Popescu, “Quantitative phase imaging for medical diagnosis,” J. Biophotonics 10(2), 177–205 (2017).

[Crossref]

J. Li, A. Matlock, Y. Li, Q. Chen, C. Zuo, and L. Tian, “High-speed in vitro intensity diffraction tomography,” arXiv preprint arXiv:1904.06004 (2019).

V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

[Crossref]

H. Majeed, S. Sridharan, M. Mir, L. Ma, E. Min, W. Jung, and G. Popescu, “Quantitative phase imaging for medical diagnosis,” J. Biophotonics 10(2), 177–205 (2017).

[Crossref]

H. Majeed, S. Sridharan, M. Mir, L. Ma, E. Min, W. Jung, and G. Popescu, “Quantitative phase imaging for medical diagnosis,” J. Biophotonics 10(2), 177–205 (2017).

[Crossref]

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 8(3), 256–263 (2014).

[Crossref]

V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

[Crossref]

T. H. Nguyen, M. E. Kandel, M. Rubessa, M. B. Wheeler, and G. Popescu, “Gradient light interference microscopy for 3D imaging of unlabeled specimens,” Nat. Commun. 8(1), 210 (2017).

[Crossref]

Y. Rivenson, Y. Zhang, H. Günaydın, D. Teng, and A. Ozcan, “Phase recovery and holographic image reconstruction using deep learning in neural networks,” Light: Sci. Appl. 7(2), 17141 (2018).

[Crossref]

Y. Fan, J. Sun, Q. Chen, X. Pan, L. Tian, and C. Zuo, “Optimal illumination scheme for isotropic quantitative differential phase contrast microscopy,” Photonics Res. 7(8), 890 (2019).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Optical tomographic image reconstruction based on beam propagation and sparse regularization,” IEEE Trans. Comput. Imaging 2(1), 59–70 (2016).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach to optical tomography,” Optica 2(6), 517–522 (2015).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

Y. Park, C. Depeursinge, and G. Popescu, “Quantitative phase imaging in biomedicine,” Nat. Photonics 12(10), 578–589 (2018).

[Crossref]

Y. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. Choi, M. S. Feld, and S. Suresh, “Refractive index maps and membrane dynamics of human red blood cells parasitized by plasmodium falciparum,” Proc. Natl. Acad. Sci. 105(37), 13730–13735 (2008).

[Crossref]

Z. F. Phillips, M. Chen, and L. Waller, “Single-shot quantitative phase microscopy with color-multiplexed differential phase contrast (cdpc),” PLoS One 12(2), e0171228 (2017).

[Crossref]

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

Y. Park, C. Depeursinge, and G. Popescu, “Quantitative phase imaging in biomedicine,” Nat. Photonics 12(10), 578–589 (2018).

[Crossref]

H. Majeed, S. Sridharan, M. Mir, L. Ma, E. Min, W. Jung, and G. Popescu, “Quantitative phase imaging for medical diagnosis,” J. Biophotonics 10(2), 177–205 (2017).

[Crossref]

T. H. Nguyen, M. E. Kandel, M. Rubessa, M. B. Wheeler, and G. Popescu, “Gradient light interference microscopy for 3D imaging of unlabeled specimens,” Nat. Commun. 8(1), 210 (2017).

[Crossref]

T. Kim, R. Zhou, L. L. Goddard, and G. Popescu, “Solving inverse scattering problems in biological samples by quantitative phase imaging,” Laser Photonics Rev. 10(1), 13–39 (2016).

[Crossref]

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 8(3), 256–263 (2014).

[Crossref]

Y. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. Choi, M. S. Feld, and S. Suresh, “Refractive index maps and membrane dynamics of human red blood cells parasitized by plasmodium falciparum,” Proc. Natl. Acad. Sci. 105(37), 13730–13735 (2008).

[Crossref]

J. Lim, A. B. Ayoub, E. E. Antoine, and D. Psaltis, “High-fidelity optical diffraction tomography of multiple scattering samples,” Light: Sci. Appl. 8(1), 1–12 (2019).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Optical tomographic image reconstruction based on beam propagation and sparse regularization,” IEEE Trans. Comput. Imaging 2(1), 59–70 (2016).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach to optical tomography,” Optica 2(6), 517–522 (2015).

[Crossref]

S. Chowdhury, M. Chen, R. Eckert, D. Ren, F. Wu, N. Repina, and L. Waller, “High-resolution 3d refractive index microscopy of multiple-scattering samples from intensity images,” Optica 6(9), 1211–1219 (2019).

[Crossref]

M. Kellman, E. Bostan, N. Repina, and L. Waller, “Physics-based learned design: Optimized coded-illumination for quantitative phase imaging,” IEEE Trans. Comput. Imaging 5(3), 344–353 (2019).

[Crossref]

Y. Rivenson, Y. Zhang, H. Günaydın, D. Teng, and A. Ozcan, “Phase recovery and holographic image reconstruction using deep learning in neural networks,” Light: Sci. Appl. 7(2), 17141 (2018).

[Crossref]

T. H. Nguyen, M. E. Kandel, M. Rubessa, M. B. Wheeler, and G. Popescu, “Gradient light interference microscopy for 3D imaging of unlabeled specimens,” Nat. Commun. 8(1), 210 (2017).

[Crossref]

A. Goy, G. Rughoobur, S. Li, K. Arthur, A. I. Akinwande, and G. Barbastathis, “High-resolution limited-angle phase tomography of dense layered objects using deep neural networks,” Proc. Natl. Acad. Sci. 116(40), 19848–19856 (2019).

[Crossref]

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

B. Diederich, R. Wartmann, H. Schadwinkel, and R. Heintzmann, “Using machine-learning to optimize phase contrast in a low-cost cellphone microscope,” PLoS One 13(3), e0192937 (2018).

[Crossref]

V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Optical tomographic image reconstruction based on beam propagation and sparse regularization,” IEEE Trans. Comput. Imaging 2(1), 59–70 (2016).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach to optical tomography,” Optica 2(6), 517–522 (2015).

[Crossref]

S. Li, M. Deng, J. Lee, A. Sinha, and G. Barbastathis, “Imaging through glass diffusers using densely connected convolutional networks,” Optica 5(7), 803–813 (2018).

[Crossref]

A. Sinha, J. Lee, S. Li, and G. Barbastathis, “Lensless computational imaging through deep learning,” Optica 4(9), 1117–1125 (2017).

[Crossref]

H. Majeed, S. Sridharan, M. Mir, L. Ma, E. Min, W. Jung, and G. Popescu, “Quantitative phase imaging for medical diagnosis,” J. Biophotonics 10(2), 177–205 (2017).

[Crossref]

N. Streibl, “Phase imaging by the transport equation of intensity,” Opt. Commun. 49(1), 6–10 (1984).

[Crossref]

Y. Fan, J. Sun, Q. Chen, X. Pan, L. Tian, and C. Zuo, “Optimal illumination scheme for isotropic quantitative differential phase contrast microscopy,” Photonics Res. 7(8), 890 (2019).

[Crossref]

J. Li, Q. Chen, J. Sun, J. Zhang, J. Ding, and C. Zuo, “Three-dimensional tomographic microscopy technique with multi-frequency combination with partially coherent illuminations,” Biomed. Opt. Express 9(6), 2526–2542 (2018).

[Crossref]

Y. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. Choi, M. S. Feld, and S. Suresh, “Refractive index maps and membrane dynamics of human red blood cells parasitized by plasmodium falciparum,” Proc. Natl. Acad. Sci. 105(37), 13730–13735 (2008).

[Crossref]

W. Tahir, U. S. Kamilov, and L. Tian, “Holographic particle localization under multiple scattering,” Adv. Photonics 1(03), 1 (2019).

[Crossref]

R. Ling, W. Tahir, H.-Y. Lin, H. Lee, and L. Tian, “High-throughput intensity diffraction tomography with a computational microscope,” Biomed. Opt. Express 9(5), 2130 (2018).

[Crossref]

Y. Rivenson, Y. Zhang, H. Günaydın, D. Teng, and A. Ozcan, “Phase recovery and holographic image reconstruction using deep learning in neural networks,” Light: Sci. Appl. 7(2), 17141 (2018).

[Crossref]

W. Tahir, U. S. Kamilov, and L. Tian, “Holographic particle localization under multiple scattering,” Adv. Photonics 1(03), 1 (2019).

[Crossref]

Y. Fan, J. Sun, Q. Chen, X. Pan, L. Tian, and C. Zuo, “Optimal illumination scheme for isotropic quantitative differential phase contrast microscopy,” Photonics Res. 7(8), 890 (2019).

[Crossref]

Y. Xue, S. Cheng, Y. Li, and L. Tian, “Reliable deep-learning-based phase imaging with uncertainty quantification,” Optica 6(5), 618–629 (2019).

[Crossref]

T. Nguyen, Y. Xue, Y. Li, L. Tian, and G. Nehmetallah, “Deep learning approach for fourier ptychography microscopy,” Opt. Express 26(20), 26470–26484 (2018).

[Crossref]

R. Ling, W. Tahir, H.-Y. Lin, H. Lee, and L. Tian, “High-throughput intensity diffraction tomography with a computational microscope,” Biomed. Opt. Express 9(5), 2130 (2018).

[Crossref]

Y. Li, Y. Xue, and L. Tian, “Deep speckle correlation: a deep learning approach toward scalable imaging through scattering media,” Optica 5(10), 1181–1190 (2018).

[Crossref]

M. Chen, L. Tian, and L. Waller, “3D differential phase contrast microscopy,” Biomed. Opt. Express 7(10), 3940–3950 (2016).

[Crossref]

L. Tian, Z. Liu, L.-H. Yeh, M. Chen, J. Zhong, and L. Waller, “Computational illumination for high-speed in vitro Fourier ptychographic microscopy,” Optica 2(10), 904–911 (2015).

[Crossref]

L. Tian and L. Waller, “3D intensity and phase imaging from light field measurements in an led array microscope,” Optica 2(2), 104–111 (2015).

[Crossref]

L. Tian and L. Waller, “Quantitative differential phase contrast imaging in an LED array microscope,” Opt. Express 23(9), 11394–11403 (2015).

[Crossref]

L. Tian, X. Li, K. Ramchandran, and L. Waller, “Multiplexed coded illumination for Fourier ptychography with an LED array microscope,” Biomed. Opt. Express 5(7), 2376–2389 (2014).

[Crossref]

Z. Liu, L. Tian, S. Liu, and L. Waller, “Real-time brightfield, darkfield, and phase contrast imaging in a light-emitting diode array microscope,” J. Biomed. Opt. 19(10), 106002 (2014).

[Crossref]

J. Li, A. Matlock, Y. Li, Q. Chen, C. Zuo, and L. Tian, “High-speed in vitro intensity diffraction tomography,” arXiv preprint arXiv:1904.06004 (2019).

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Optical tomographic image reconstruction based on beam propagation and sparse regularization,” IEEE Trans. Comput. Imaging 2(1), 59–70 (2016).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach to optical tomography,” Optica 2(6), 517–522 (2015).

[Crossref]

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Optical tomographic image reconstruction based on beam propagation and sparse regularization,” IEEE Trans. Comput. Imaging 2(1), 59–70 (2016).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach to optical tomography,” Optica 2(6), 517–522 (2015).

[Crossref]

M. Kellman, E. Bostan, N. Repina, and L. Waller, “Physics-based learned design: Optimized coded-illumination for quantitative phase imaging,” IEEE Trans. Comput. Imaging 5(3), 344–353 (2019).

[Crossref]

S. Chowdhury, M. Chen, R. Eckert, D. Ren, F. Wu, N. Repina, and L. Waller, “High-resolution 3d refractive index microscopy of multiple-scattering samples from intensity images,” Optica 6(9), 1211–1219 (2019).

[Crossref]

Z. F. Phillips, M. Chen, and L. Waller, “Single-shot quantitative phase microscopy with color-multiplexed differential phase contrast (cdpc),” PLoS One 12(2), e0171228 (2017).

[Crossref]

M. Chen, L. Tian, and L. Waller, “3D differential phase contrast microscopy,” Biomed. Opt. Express 7(10), 3940–3950 (2016).

[Crossref]

L. Tian, Z. Liu, L.-H. Yeh, M. Chen, J. Zhong, and L. Waller, “Computational illumination for high-speed in vitro Fourier ptychographic microscopy,” Optica 2(10), 904–911 (2015).

[Crossref]

L. Tian and L. Waller, “Quantitative differential phase contrast imaging in an LED array microscope,” Opt. Express 23(9), 11394–11403 (2015).

[Crossref]

L. Tian and L. Waller, “3D intensity and phase imaging from light field measurements in an led array microscope,” Optica 2(2), 104–111 (2015).

[Crossref]

L. Tian, X. Li, K. Ramchandran, and L. Waller, “Multiplexed coded illumination for Fourier ptychography with an LED array microscope,” Biomed. Opt. Express 5(7), 2376–2389 (2014).

[Crossref]

Z. Liu, L. Tian, S. Liu, and L. Waller, “Real-time brightfield, darkfield, and phase contrast imaging in a light-emitting diode array microscope,” J. Biomed. Opt. 19(10), 106002 (2014).

[Crossref]

M. Kellman, E. Bostan, M. Chen, and L. Waller, “Data-driven design for fourier ptychographic microscopy,” in 2019 IEEE International Conference on Computational Photography (ICCP), (IEEE, 2019), pp. 1–8.

B. Diederich, R. Wartmann, H. Schadwinkel, and R. Heintzmann, “Using machine-learning to optimize phase contrast in a low-cost cellphone microscope,” PLoS One 13(3), e0192937 (2018).

[Crossref]

T. H. Nguyen, M. E. Kandel, M. Rubessa, M. B. Wheeler, and G. Popescu, “Gradient light interference microscopy for 3D imaging of unlabeled specimens,” Nat. Commun. 8(1), 210 (2017).

[Crossref]

E. Wolf, “Three-dimensional structure determination of semi-transparent objects from holographic data,” Opt. Commun. 1(4), 153–156 (1969).

[Crossref]

Y. Xue, S. Cheng, Y. Li, and L. Tian, “Reliable deep-learning-based phase imaging with uncertainty quantification,” Optica 6(5), 618–629 (2019).

[Crossref]

T. Nguyen, Y. Xue, Y. Li, L. Tian, and G. Nehmetallah, “Deep learning approach for fourier ptychography microscopy,” Opt. Express 26(20), 26470–26484 (2018).

[Crossref]

Y. Li, Y. Xue, and L. Tian, “Deep speckle correlation: a deep learning approach toward scalable imaging through scattering media,” Optica 5(10), 1181–1190 (2018).

[Crossref]

G. Zheng, R. Horstmeyer, and C. Yang, “Wide-field, high-resolution Fourier Ptychographic microscopy,” Nat. Photonics 7(9), 739–745 (2013).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

J. Li, Q. Chen, J. Sun, J. Zhang, J. Ding, and C. Zuo, “Three-dimensional tomographic microscopy technique with multi-frequency combination with partially coherent illuminations,” Biomed. Opt. Express 9(6), 2526–2542 (2018).

[Crossref]

J. Li, Q. Chen, J. Zhang, Y. Zhang, L. Lu, and C. Zuo, “Efficient quantitative phase microscopy using programmable annular led illumination,” Biomed. Opt. Express 8(10), 4687–4705 (2017).

[Crossref]

Y. Rivenson, Y. Zhang, H. Günaydın, D. Teng, and A. Ozcan, “Phase recovery and holographic image reconstruction using deep learning in neural networks,” Light: Sci. Appl. 7(2), 17141 (2018).

[Crossref]

J. Li, Q. Chen, J. Zhang, Y. Zhang, L. Lu, and C. Zuo, “Efficient quantitative phase microscopy using programmable annular led illumination,” Biomed. Opt. Express 8(10), 4687–4705 (2017).

[Crossref]

G. Zheng, R. Horstmeyer, and C. Yang, “Wide-field, high-resolution Fourier Ptychographic microscopy,” Nat. Photonics 7(9), 739–745 (2013).

[Crossref]

D. Jin, R. Zhou, Z. Yaqoob, and P. So, “Tomographic phase microscopy: Principles and applications in bioimaging,” J. Opt. Soc. Am. B 34(5), B64–B77 (2017).

[Crossref]

T. Kim, R. Zhou, L. L. Goddard, and G. Popescu, “Solving inverse scattering problems in biological samples by quantitative phase imaging,” Laser Photonics Rev. 10(1), 13–39 (2016).

[Crossref]

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 8(3), 256–263 (2014).

[Crossref]

Y. Fan, J. Sun, Q. Chen, X. Pan, L. Tian, and C. Zuo, “Optimal illumination scheme for isotropic quantitative differential phase contrast microscopy,” Photonics Res. 7(8), 890 (2019).

[Crossref]

J. Li, Q. Chen, J. Sun, J. Zhang, J. Ding, and C. Zuo, “Three-dimensional tomographic microscopy technique with multi-frequency combination with partially coherent illuminations,” Biomed. Opt. Express 9(6), 2526–2542 (2018).

[Crossref]

J. Li, Q. Chen, J. Zhang, Y. Zhang, L. Lu, and C. Zuo, “Efficient quantitative phase microscopy using programmable annular led illumination,” Biomed. Opt. Express 8(10), 4687–4705 (2017).

[Crossref]

J. Li, A. Matlock, Y. Li, Q. Chen, C. Zuo, and L. Tian, “High-speed in vitro intensity diffraction tomography,” arXiv preprint arXiv:1904.06004 (2019).

W. Tahir, U. S. Kamilov, and L. Tian, “Holographic particle localization under multiple scattering,” Adv. Photonics 1(03), 1 (2019).

[Crossref]

J. Li, Q. Chen, J. Sun, J. Zhang, J. Ding, and C. Zuo, “Three-dimensional tomographic microscopy technique with multi-frequency combination with partially coherent illuminations,” Biomed. Opt. Express 9(6), 2526–2542 (2018).

[Crossref]

M. Chen, L. Tian, and L. Waller, “3D differential phase contrast microscopy,” Biomed. Opt. Express 7(10), 3940–3950 (2016).

[Crossref]

R. Ling, W. Tahir, H.-Y. Lin, H. Lee, and L. Tian, “High-throughput intensity diffraction tomography with a computational microscope,” Biomed. Opt. Express 9(5), 2130 (2018).

[Crossref]

L. Tian, X. Li, K. Ramchandran, and L. Waller, “Multiplexed coded illumination for Fourier ptychography with an LED array microscope,” Biomed. Opt. Express 5(7), 2376–2389 (2014).

[Crossref]

J. Li, Q. Chen, J. Zhang, Y. Zhang, L. Lu, and C. Zuo, “Efficient quantitative phase microscopy using programmable annular led illumination,” Biomed. Opt. Express 8(10), 4687–4705 (2017).

[Crossref]

M. Kellman, E. Bostan, N. Repina, and L. Waller, “Physics-based learned design: Optimized coded-illumination for quantitative phase imaging,” IEEE Trans. Comput. Imaging 5(3), 344–353 (2019).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Optical tomographic image reconstruction based on beam propagation and sparse regularization,” IEEE Trans. Comput. Imaging 2(1), 59–70 (2016).

[Crossref]

Z. Liu, L. Tian, S. Liu, and L. Waller, “Real-time brightfield, darkfield, and phase contrast imaging in a light-emitting diode array microscope,” J. Biomed. Opt. 19(10), 106002 (2014).

[Crossref]

H.-H. Chen, Y.-Z. Lin, and Y. Luo, “Isotropic differential phase contrast microscopy for quantitative phase bio-imaging,” J. Biophotonics 11(8), e201700364 (2018).

[Crossref]

H. Majeed, S. Sridharan, M. Mir, L. Ma, E. Min, W. Jung, and G. Popescu, “Quantitative phase imaging for medical diagnosis,” J. Biophotonics 10(2), 177–205 (2017).

[Crossref]

D. Hamilton and C. Sheppard, “Differential phase contrast in scanning optical microscopy,” J. Microsc. 133(1), 27–39 (1984).

[Crossref]

T. Kim, R. Zhou, L. L. Goddard, and G. Popescu, “Solving inverse scattering problems in biological samples by quantitative phase imaging,” Laser Photonics Rev. 10(1), 13–39 (2016).

[Crossref]

Y. Rivenson, Y. Zhang, H. Günaydın, D. Teng, and A. Ozcan, “Phase recovery and holographic image reconstruction using deep learning in neural networks,” Light: Sci. Appl. 7(2), 17141 (2018).

[Crossref]

J. Lim, A. B. Ayoub, E. E. Antoine, and D. Psaltis, “High-fidelity optical diffraction tomography of multiple scattering samples,” Light: Sci. Appl. 8(1), 1–12 (2019).

[Crossref]

T. H. Nguyen, M. E. Kandel, M. Rubessa, M. B. Wheeler, and G. Popescu, “Gradient light interference microscopy for 3D imaging of unlabeled specimens,” Nat. Commun. 8(1), 210 (2017).

[Crossref]

Y. Park, C. Depeursinge, and G. Popescu, “Quantitative phase imaging in biomedicine,” Nat. Photonics 12(10), 578–589 (2018).

[Crossref]

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney, L. L. Goddard, and G. Popescu, “White-light diffraction tomography of unlabelled live cells,” Nat. Photonics 8(3), 256–263 (2014).

[Crossref]

G. Zheng, R. Horstmeyer, and C. Yang, “Wide-field, high-resolution Fourier Ptychographic microscopy,” Nat. Photonics 7(9), 739–745 (2013).

[Crossref]

E. Wolf, “Three-dimensional structure determination of semi-transparent objects from holographic data,” Opt. Commun. 1(4), 153–156 (1969).

[Crossref]

N. Streibl, “Phase imaging by the transport equation of intensity,” Opt. Commun. 49(1), 6–10 (1984).

[Crossref]

L. Tian and L. Waller, “Quantitative differential phase contrast imaging in an LED array microscope,” Opt. Express 23(9), 11394–11403 (2015).

[Crossref]

T. Nguyen, Y. Xue, Y. Li, L. Tian, and G. Nehmetallah, “Deep learning approach for fourier ptychography microscopy,” Opt. Express 26(20), 26470–26484 (2018).

[Crossref]

W. Lee, D. Jung, S. Ryu, and C. Joo, “Single-exposure quantitative phase imaging in color-coded led microscopy,” Opt. Express 25(7), 8398–8411 (2017).

[Crossref]

Y. Sun, Z. Xia, and U. S. Kamilov, “Efficient and accurate inversion of multiple scattering with deep learning,” Opt. Express 26(11), 14678–14688 (2018).

[Crossref]

L. Tian, Z. Liu, L.-H. Yeh, M. Chen, J. Zhong, and L. Waller, “Computational illumination for high-speed in vitro Fourier ptychographic microscopy,” Optica 2(10), 904–911 (2015).

[Crossref]

Y. Xue, S. Cheng, Y. Li, and L. Tian, “Reliable deep-learning-based phase imaging with uncertainty quantification,” Optica 6(5), 618–629 (2019).

[Crossref]

U. S. Kamilov, I. N. Papadopoulos, M. H. Shoreh, A. Goy, C. Vonesch, M. Unser, and D. Psaltis, “Learning approach to optical tomography,” Optica 2(6), 517–522 (2015).

[Crossref]

L. Tian and L. Waller, “3D intensity and phase imaging from light field measurements in an led array microscope,” Optica 2(2), 104–111 (2015).

[Crossref]

S. Li, M. Deng, J. Lee, A. Sinha, and G. Barbastathis, “Imaging through glass diffusers using densely connected convolutional networks,” Optica 5(7), 803–813 (2018).

[Crossref]

Y. Li, Y. Xue, and L. Tian, “Deep speckle correlation: a deep learning approach toward scalable imaging through scattering media,” Optica 5(10), 1181–1190 (2018).

[Crossref]

A. Sinha, J. Lee, S. Li, and G. Barbastathis, “Lensless computational imaging through deep learning,” Optica 4(9), 1117–1125 (2017).

[Crossref]

S. Chowdhury, M. Chen, R. Eckert, D. Ren, F. Wu, N. Repina, and L. Waller, “High-resolution 3d refractive index microscopy of multiple-scattering samples from intensity images,” Optica 6(9), 1211–1219 (2019).

[Crossref]

Y. Fan, J. Sun, Q. Chen, X. Pan, L. Tian, and C. Zuo, “Optimal illumination scheme for isotropic quantitative differential phase contrast microscopy,” Photonics Res. 7(8), 890 (2019).

[Crossref]

B. Diederich, R. Wartmann, H. Schadwinkel, and R. Heintzmann, “Using machine-learning to optimize phase contrast in a low-cost cellphone microscope,” PLoS One 13(3), e0192937 (2018).

[Crossref]

Z. F. Phillips, M. Chen, and L. Waller, “Single-shot quantitative phase microscopy with color-multiplexed differential phase contrast (cdpc),” PLoS One 12(2), e0171228 (2017).

[Crossref]

V. Nandakumar, L. Kelbauskas, K. F. Hernandez, K. M. Lintecum, P. Senechal, K. J. Bussey, P. C. Davies, R. H. Johnson, and D. R. Meldrum, “Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations,” PLoS One 7(1), e29230 (2012).

[Crossref]

Y. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. Choi, M. S. Feld, and S. Suresh, “Refractive index maps and membrane dynamics of human red blood cells parasitized by plasmodium falciparum,” Proc. Natl. Acad. Sci. 105(37), 13730–13735 (2008).

[Crossref]

A. Goy, G. Rughoobur, S. Li, K. Arthur, A. I. Akinwande, and G. Barbastathis, “High-resolution limited-angle phase tomography of dense layered objects using deep neural networks,” Proc. Natl. Acad. Sci. 116(40), 19848–19856 (2019).

[Crossref]

G. Kim, M. Lee, S. Youn, E. Lee, D. Kwon, J. Shin, S. Lee, Y. S. Lee, and Y. Park, “Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from pelophylax nigromaculatus,” Sci. Rep. 8(1), 9192 (2018).

[Crossref]

P. A. Sandoz, C. Tremblay, S. Equis, S. Pop, L. Pollaro, Y. Cotte, G. F. Van Der Goot, and M. Frechin, “Label free 3D analysis of organelles in living cells by refractive index shows pre-mitotic organelle spinning in mammalian stem cells,” BioRxiv p. 407239 (2018).

M. Kellman, E. Bostan, M. Chen, and L. Waller, “Data-driven design for fourier ptychographic microscopy,” in 2019 IEEE International Conference on Computational Photography (ICCP), (IEEE, 2019), pp. 1–8.

R. Bridson, “Fast poisson disk sampling in arbitrary dimensions,” in SIGGRAPH sketches, (2007), p. 22.

M. Bertero and P. Boccacci, Introduction to Inverse Problems in Imaging (Taylor & Francis, 1998).

J. Li, A. Matlock, Y. Li, Q. Chen, C. Zuo, and L. Tian, “High-speed in vitro intensity diffraction tomography,” arXiv preprint arXiv:1904.06004 (2019).